FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: LJQ49

Calculation Name: 1EL6-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1EL6

Chain ID: A

ChEMBL ID:

UniProt ID: P10929

Base Structure: X-ray

Registration Date: 2023-03-13

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 208
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1890336.907137
FMO2-HF: Nuclear repulsion 1812155.587206
FMO2-HF: Total energy -78181.319931
FMO2-MP2: Total energy -78413.356775


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:12:SER)


Summations of interaction energy for fragment #1(A:12:SER)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-41.125-40.1723.833-11.289-13.498-0.024
Interaction energy analysis for fragmet #1(A:12:SER)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.058 / q_NPA : 0.050
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A14LEU00.0690.0193.767-0.6001.552-0.014-1.222-0.9160.003
4A15ALA00.0530.0375.2750.6270.705-0.001-0.004-0.0730.000
5A16ASP-1-0.806-0.9142.413-6.275-3.5776.032-4.195-4.536-0.050
6A17PHE0-0.046-0.0282.449-1.914-0.0911.567-1.304-2.085-0.008
7A18LEU0-0.0170.0136.5420.1770.1770.0000.0000.0000.000
8A19GLY00.0530.0249.5160.1210.1210.0000.0000.0000.000
9A20PHE0-0.037-0.02212.419-0.090-0.0900.0000.0000.0000.000
10A21ARG10.9420.96814.7100.2050.2050.0000.0000.0000.000
11A22PRO00.0360.02817.682-0.021-0.0210.0000.0000.0000.000
12A23LYS10.7830.88819.455-0.070-0.0700.0000.0000.0000.000
13A24THR00.023-0.00522.9010.0200.0200.0000.0000.0000.000
14A25GLY0-0.013-0.01725.616-0.006-0.0060.0000.0000.0000.000
15A26ASP-1-0.800-0.87321.4670.0920.0920.0000.0000.0000.000
16A27ILE00.0150.01023.3770.0210.0210.0000.0000.0000.000
17A28ASP-1-0.812-0.91322.5150.0890.0890.0000.0000.0000.000
18A29VAL00.0000.01617.4020.0050.0050.0000.0000.0000.000
19A30MET00.012-0.00520.1500.0140.0140.0000.0000.0000.000
20A31ASN0-0.053-0.02022.722-0.016-0.0160.0000.0000.0000.000
21A32ARG10.9000.95022.760-0.312-0.3120.0000.0000.0000.000
22A33GLN0-0.040-0.02116.9060.0290.0290.0000.0000.0000.000
23A34SER0-0.025-0.01819.348-0.014-0.0140.0000.0000.0000.000
24A35VAL00.0080.00717.0500.0480.0480.0000.0000.0000.000
25A36GLY00.009-0.00413.486-0.059-0.0590.0000.0000.0000.000
26A37SER0-0.065-0.03113.1640.0060.0060.0000.0000.0000.000
27A38VAL0-0.0090.02610.2500.0590.0590.0000.0000.0000.000
28A39THR00.0170.0008.8650.1250.1250.0000.0000.0000.000
29A40ILE00.0450.0079.7330.1930.1930.0000.0000.0000.000
30A41SER00.0200.0096.2070.3470.3470.0000.0000.0000.000
31A42GLN00.0200.0124.8941.5961.5960.0000.0000.0000.000
32A43LEU00.0220.0196.5360.1230.1230.0000.0000.0000.000
33A44ALA0-0.054-0.0287.948-0.187-0.1870.0000.0000.0000.000
34A45LYS10.8080.9061.859-33.119-38.91516.249-4.564-5.8880.031
35A46GLY00.0030.0165.981-0.747-0.7470.0000.0000.0000.000
36A47PHE0-0.010-0.0147.258-0.516-0.5160.0000.0000.0000.000
37A48TYR00.008-0.0169.1070.2080.2080.0000.0000.0000.000
38A49GLU-1-0.933-0.95011.281-0.046-0.0460.0000.0000.0000.000
39A50PRO0-0.013-0.00911.2940.0830.0830.0000.0000.0000.000
40A51ASN0-0.029-0.0208.456-0.160-0.1600.0000.0000.0000.000
41A52ILE00.0350.0069.7330.0840.0840.0000.0000.0000.000
42A53GLU-1-0.872-0.9315.300-0.727-0.7270.0000.0000.0000.000
43A54SER0-0.033-0.0198.1000.1790.1790.0000.0000.0000.000
44A55ALA00.0300.01110.6620.0120.0120.0000.0000.0000.000
45A56ILE0-0.026-0.00910.0420.0230.0230.0000.0000.0000.000
46A57ASN0-0.050-0.0458.4420.1500.1500.0000.0000.0000.000
47A58ASP-1-0.804-0.90312.4610.3210.3210.0000.0000.0000.000
48A59VAL00.002-0.00315.766-0.004-0.0040.0000.0000.0000.000
49A60HIS0-0.0340.00413.278-0.016-0.0160.0000.0000.0000.000
50A61ASN00.000-0.01115.1810.0040.0040.0000.0000.0000.000
51A62PHE0-0.031-0.01418.189-0.010-0.0100.0000.0000.0000.000
52A63SER0-0.051-0.02519.206-0.012-0.0120.0000.0000.0000.000
53A64ILE0-0.0110.00918.999-0.013-0.0130.0000.0000.0000.000
54A65LYS10.8650.92421.884-0.063-0.0630.0000.0000.0000.000
55A66ASP-1-0.847-0.90624.7710.1630.1630.0000.0000.0000.000
56A67VAL0-0.015-0.00725.866-0.020-0.0200.0000.0000.0000.000
57A68GLY00.0230.01728.3020.0110.0110.0000.0000.0000.000
58A69THR0-0.056-0.03628.668-0.004-0.0040.0000.0000.0000.000
59A70ILE0-0.016-0.00931.234-0.009-0.0090.0000.0000.0000.000
60A71ILE00.0230.02629.267-0.001-0.0010.0000.0000.0000.000
61A72THR0-0.019-0.01033.7590.0010.0010.0000.0000.0000.000
62A73ASN00.0210.01735.785-0.003-0.0030.0000.0000.0000.000
63A74LYS10.9160.94738.6370.0200.0200.0000.0000.0000.000
64A75THR00.007-0.00538.1840.0000.0000.0000.0000.0000.000
65A76GLY00.0300.02940.137-0.002-0.0020.0000.0000.0000.000
66A77VAL0-0.023-0.00734.540-0.001-0.0010.0000.0000.0000.000
67A78SER00.006-0.03332.8400.0070.0070.0000.0000.0000.000
68A79PRO0-0.020-0.02629.945-0.011-0.0110.0000.0000.0000.000
69A80GLU-1-0.791-0.84928.240-0.039-0.0390.0000.0000.0000.000
70A81GLY0-0.0090.01825.911-0.006-0.0060.0000.0000.0000.000
71A82VAL0-0.022-0.01526.9980.0080.0080.0000.0000.0000.000
72A83SER00.020-0.00925.022-0.004-0.0040.0000.0000.0000.000
73A84GLN00.0040.00026.2700.0050.0050.0000.0000.0000.000
74A85THR0-0.033-0.03428.051-0.005-0.0050.0000.0000.0000.000
75A86ASP-1-0.733-0.82028.904-0.252-0.2520.0000.0000.0000.000
76A87TYR0-0.006-0.03032.0880.0090.0090.0000.0000.0000.000
77A88TRP0-0.009-0.01225.308-0.009-0.0090.0000.0000.0000.000
78A89ALA00.014-0.00132.7430.0130.0130.0000.0000.0000.000
79A90PHE00.0210.00931.223-0.014-0.0140.0000.0000.0000.000
80A91SER0-0.009-0.01136.9570.0140.0140.0000.0000.0000.000
81A92GLY00.0200.01939.065-0.010-0.0100.0000.0000.0000.000
82A93THR0-0.009-0.02440.9620.0070.0070.0000.0000.0000.000
83A94VAL0-0.0300.02035.669-0.005-0.0050.0000.0000.0000.000
84A95THR0-0.037-0.04338.3290.0140.0140.0000.0000.0000.000
85A96ASP-1-0.826-0.93936.358-0.238-0.2380.0000.0000.0000.000
86A97ASP-1-0.919-0.95538.986-0.172-0.1720.0000.0000.0000.000
87A98SER0-0.079-0.02638.6300.0070.0070.0000.0000.0000.000
88A99LEU0-0.053-0.02736.5520.0020.0020.0000.0000.0000.000
89A100PRO00.0050.01841.2190.0050.0050.0000.0000.0000.000
90A101PRO00.0220.00142.516-0.007-0.0070.0000.0000.0000.000
91A102GLY0-0.0120.00242.2330.0050.0050.0000.0000.0000.000
92A103SER0-0.019-0.02038.826-0.001-0.0010.0000.0000.0000.000
93A104PRO0-0.036-0.01434.749-0.005-0.0050.0000.0000.0000.000
94A105ILE00.0310.01433.242-0.006-0.0060.0000.0000.0000.000
95A106THR0-0.049-0.04026.861-0.001-0.0010.0000.0000.0000.000
96A107VAL0-0.0130.00929.920-0.008-0.0080.0000.0000.0000.000
97A108LEU00.0100.00723.820-0.009-0.0090.0000.0000.0000.000
98A109VAL00.0080.00626.4540.0190.0190.0000.0000.0000.000
99A110PHE00.007-0.00325.109-0.011-0.0110.0000.0000.0000.000
100A111GLY00.0100.01521.725-0.035-0.0350.0000.0000.0000.000
101A112LEU0-0.0140.00021.881-0.031-0.0310.0000.0000.0000.000
102A113PRO00.013-0.00422.1030.0230.0230.0000.0000.0000.000
103A114VAL00.0060.01025.2120.0200.0200.0000.0000.0000.000
104A115SER0-0.0300.00328.8950.0090.0090.0000.0000.0000.000
105A116ALA00.025-0.00731.1220.0130.0130.0000.0000.0000.000
106A117THR00.0230.00134.741-0.003-0.0030.0000.0000.0000.000
107A118THR0-0.013-0.00938.0050.0050.0050.0000.0000.0000.000
108A119GLY00.0080.00540.1100.0100.0100.0000.0000.0000.000
109A120MET0-0.066-0.00738.1650.0010.0010.0000.0000.0000.000
110A121THR0-0.008-0.04140.689-0.008-0.0080.0000.0000.0000.000
111A122ALA00.0340.00838.821-0.006-0.0060.0000.0000.0000.000
112A123ILE00.0080.01338.508-0.006-0.0060.0000.0000.0000.000
113A124GLU-1-0.817-0.88339.230-0.143-0.1430.0000.0000.0000.000
114A125PHE00.0350.00631.661-0.004-0.0040.0000.0000.0000.000
115A126VAL00.0250.02134.577-0.012-0.0120.0000.0000.0000.000
116A127ALA0-0.037-0.02734.535-0.003-0.0030.0000.0000.0000.000
117A128LYS10.8770.94932.5980.1810.1810.0000.0000.0000.000
118A129VAL00.0260.00529.619-0.011-0.0110.0000.0000.0000.000
119A130ARG10.8380.91129.8610.1450.1450.0000.0000.0000.000
120A131VAL0-0.038-0.00529.2130.0020.0020.0000.0000.0000.000
121A132ALA00.0580.03326.309-0.005-0.0050.0000.0000.0000.000
122A133LEU00.0050.00125.361-0.022-0.0220.0000.0000.0000.000
123A134GLN0-0.0160.00325.8710.0050.0050.0000.0000.0000.000
124A135GLU-1-0.941-0.97023.860-0.271-0.2710.0000.0000.0000.000
125A136ALA00.0040.00121.408-0.013-0.0130.0000.0000.0000.000
126A137ILE0-0.036-0.00721.154-0.012-0.0120.0000.0000.0000.000
127A138ALA0-0.029-0.00822.3240.0100.0100.0000.0000.0000.000
128A139SER0-0.063-0.04018.0030.0270.0270.0000.0000.0000.000
129A140PHE0-0.015-0.01017.458-0.044-0.0440.0000.0000.0000.000
130A141THR0-0.031-0.01016.577-0.066-0.0660.0000.0000.0000.000
131A142ALA00.0280.01117.9750.0070.0070.0000.0000.0000.000
132A143ILE0-0.012-0.00319.4570.0360.0360.0000.0000.0000.000
133A144ASN0-0.026-0.01522.8120.0120.0120.0000.0000.0000.000
134A145SER00.002-0.01424.5330.0210.0210.0000.0000.0000.000
135A146TYR0-0.026-0.03127.998-0.013-0.0130.0000.0000.0000.000
136A147LYS10.7960.89830.6430.1410.1410.0000.0000.0000.000
137A148ASP-1-0.762-0.86434.489-0.151-0.1510.0000.0000.0000.000
138A149HIS00.0450.02937.3210.0070.0070.0000.0000.0000.000
139A150PRO0-0.050-0.02339.3630.0040.0040.0000.0000.0000.000
140A151THR0-0.030-0.03042.6630.0060.0060.0000.0000.0000.000
141A152ASP-1-0.827-0.88341.468-0.138-0.1380.0000.0000.0000.000
142A153GLY00.0280.01040.699-0.005-0.0050.0000.0000.0000.000
143A154SER0-0.097-0.07339.457-0.008-0.0080.0000.0000.0000.000
144A155LYS10.8060.88036.6670.1420.1420.0000.0000.0000.000
145A156LEU0-0.025-0.00732.3670.0080.0080.0000.0000.0000.000
146A157GLU-1-0.794-0.86833.344-0.144-0.1440.0000.0000.0000.000
147A158VAL0-0.021-0.01127.3050.0000.0000.0000.0000.0000.000
148A159THR00.0290.02627.3000.0030.0030.0000.0000.0000.000
149A160TYR0-0.009-0.01322.746-0.018-0.0180.0000.0000.0000.000
150A161LEU0-0.042-0.01419.0670.0300.0300.0000.0000.0000.000
151A162ASP-1-0.829-0.89419.429-0.365-0.3650.0000.0000.0000.000
152A163ASN0-0.067-0.04321.451-0.011-0.0110.0000.0000.0000.000
153A164GLN0-0.034-0.00816.783-0.006-0.0060.0000.0000.0000.000
154A165LYN0-0.0240.01522.5700.0100.0100.0000.0000.0000.000
155A166HIS10.7690.86220.4900.3480.3480.0000.0000.0000.000
156A167VAL00.0620.04925.0720.0210.0210.0000.0000.0000.000
157A168LEU0-0.037-0.01624.798-0.032-0.0320.0000.0000.0000.000
158A169SER0-0.033-0.01727.7930.0240.0240.0000.0000.0000.000
159A170THR00.023-0.00629.880-0.012-0.0120.0000.0000.0000.000
160A171TYR0-0.082-0.03828.325-0.009-0.0090.0000.0000.0000.000
161A172SER00.016-0.01232.7650.0120.0120.0000.0000.0000.000
162A173THR0-0.044-0.02330.596-0.010-0.0100.0000.0000.0000.000
163A174TYR00.0380.02630.9440.0020.0020.0000.0000.0000.000
164A175GLY00.0410.03235.6620.0090.0090.0000.0000.0000.000
165A176ILE0-0.046-0.01335.0790.0130.0130.0000.0000.0000.000
166A177THR00.0110.00535.460-0.018-0.0180.0000.0000.0000.000
167A178ILE0-0.033-0.00730.3840.0100.0100.0000.0000.0000.000
168A179SER0-0.004-0.01733.059-0.003-0.0030.0000.0000.0000.000
169A180GLN00.013-0.01928.271-0.002-0.0020.0000.0000.0000.000
170A181GLU-1-0.847-0.90232.730-0.155-0.1550.0000.0000.0000.000
171A182ILE0-0.0130.00130.3950.0020.0020.0000.0000.0000.000
172A183ILE0-0.051-0.01933.4350.0120.0120.0000.0000.0000.000
173A184SER0-0.034-0.02832.8260.0180.0180.0000.0000.0000.000
174A185GLU-1-0.878-0.92630.861-0.208-0.2080.0000.0000.0000.000
175A186SER0-0.001-0.02526.5490.0080.0080.0000.0000.0000.000
176A187LYS10.7740.88128.0430.0950.0950.0000.0000.0000.000
177A188PRO00.0490.01825.5110.0000.0000.0000.0000.0000.000
178A189GLY00.0360.01824.9140.0180.0180.0000.0000.0000.000
179A190TYR0-0.003-0.01322.167-0.015-0.0150.0000.0000.0000.000
180A191GLY00.0090.01123.5220.0180.0180.0000.0000.0000.000
181A192THR00.0070.01025.009-0.011-0.0110.0000.0000.0000.000
182A193TRP0-0.073-0.05027.1570.0230.0230.0000.0000.0000.000
183A194ASN0-0.015-0.00431.585-0.011-0.0110.0000.0000.0000.000
184A195LEU0-0.040-0.00735.2870.0030.0030.0000.0000.0000.000
185A196LEU00.0170.01437.7670.0000.0000.0000.0000.0000.000
186A197GLY00.0180.01540.2530.0010.0010.0000.0000.0000.000
187A198ALA0-0.028-0.02242.210-0.002-0.0020.0000.0000.0000.000
188A199GLN00.0130.01744.5920.0040.0040.0000.0000.0000.000
189A200THR00.004-0.00246.567-0.003-0.0030.0000.0000.0000.000
190A201VAL0-0.002-0.00646.6390.0030.0030.0000.0000.0000.000
191A202THR0-0.0040.00649.690-0.003-0.0030.0000.0000.0000.000
192A203LEU0-0.0160.00046.9680.0020.0020.0000.0000.0000.000
193A204ASP-1-0.897-0.95750.8070.0130.0130.0000.0000.0000.000
194A205ASN0-0.043-0.01453.2330.0000.0000.0000.0000.0000.000
195A206GLN0-0.009-0.00550.260-0.003-0.0030.0000.0000.0000.000
196A207GLN00.0270.00755.3030.0020.0020.0000.0000.0000.000
197A208THR0-0.011-0.00553.3920.0000.0000.0000.0000.0000.000
198A209PRO00.0030.00352.6380.0000.0000.0000.0000.0000.000
199A210THR0-0.0180.00646.124-0.005-0.0050.0000.0000.0000.000
200A211VAL00.0000.00446.0430.0030.0030.0000.0000.0000.000
201A212PHE0-0.004-0.01441.956-0.004-0.0040.0000.0000.0000.000
202A213TYR00.0080.00440.2590.0020.0020.0000.0000.0000.000
203A214HIS10.8290.88338.294-0.017-0.0170.0000.0000.0000.000
204A215PHE00.0590.01633.936-0.001-0.0010.0000.0000.0000.000
205A216GLU-1-0.834-0.91733.4270.0530.0530.0000.0000.0000.000
206A217ARG10.8510.90722.630-0.095-0.0950.0000.0000.0000.000
207A218THR00.0520.01530.2660.0120.0120.0000.0000.0000.000
208A219ALA0-0.028-0.00424.9710.0180.0180.0000.0000.0000.000