FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: LJQK9

Calculation Name: 1FLK-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1FLK

Chain ID: A

ChEMBL ID:

UniProt ID: Q13114

Base Structure: X-ray

Registration Date: 2023-03-13

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 205
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2108564.177566
FMO2-HF: Nuclear repulsion 2026284.777793
FMO2-HF: Total energy -82279.399773
FMO2-MP2: Total energy -82515.434969


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:300:LEU)


Summations of interaction energy for fragment #1(A:300:LEU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-8.821-3.497.098-2.521-9.906-0.022
Interaction energy analysis for fragmet #1(A:300:LEU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.005 / q_NPA : -0.016
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A302SER0-0.047-0.0193.806-2.774-1.592-0.007-0.456-0.7200.001
4A303VAL0-0.088-0.0822.479-0.9100.4651.929-0.743-2.5600.001
5A304ASP-1-0.833-0.9072.211-7.513-4.7914.215-2.829-4.108-0.010
6A305LYS10.9070.9572.8693.9771.9900.0262.535-0.574-0.002
7A306SER0-0.061-0.0175.0820.3580.3580.0000.0000.0000.000
8A307ALA0-0.007-0.0062.803-0.0710.4880.098-0.147-0.5090.000
9A308GLY00.1060.0502.552-3.535-2.0920.838-0.876-1.405-0.012
10A309GLN0-0.0300.0074.5530.3910.428-0.001-0.005-0.0300.000
11A310VAL00.017-0.0197.4790.2600.2600.0000.0000.0000.000
12A311ALA00.0110.0078.6110.1550.1550.0000.0000.0000.000
13A312ARG10.9420.98410.3530.6050.6050.0000.0000.0000.000
14A313ASN0-0.001-0.00112.2150.1250.1250.0000.0000.0000.000
15A314THR0-0.018-0.02713.1440.0660.0660.0000.0000.0000.000
16A315GLY00.0350.02015.0540.0370.0370.0000.0000.0000.000
17A316LEU0-0.082-0.03416.6010.0460.0460.0000.0000.0000.000
18A317LEU00.0170.00916.9250.0360.0360.0000.0000.0000.000
19A318GLU-1-0.816-0.90317.153-0.372-0.3720.0000.0000.0000.000
20A319SER00.0040.00320.8010.0290.0290.0000.0000.0000.000
21A320GLN0-0.037-0.01422.9230.0390.0390.0000.0000.0000.000
22A321LEU00.0110.00122.2940.0190.0190.0000.0000.0000.000
23A322SER00.0110.00225.1430.0140.0140.0000.0000.0000.000
24A323ARG10.8510.91826.6820.1880.1880.0000.0000.0000.000
25A324HIS00.001-0.01727.8960.0180.0180.0000.0000.0000.000
26A325ASP-1-0.880-0.92329.162-0.149-0.1490.0000.0000.0000.000
27A326GLN00.0080.01631.1700.0060.0060.0000.0000.0000.000
28A327MET0-0.044-0.00133.1700.0110.0110.0000.0000.0000.000
29A328LEU00.0380.02132.6790.0080.0080.0000.0000.0000.000
30A329SER00.0580.02434.7520.0070.0070.0000.0000.0000.000
31A330VAL0-0.023-0.01537.3350.0070.0070.0000.0000.0000.000
32A331HIS0-0.120-0.09038.3040.0090.0090.0000.0000.0000.000
33A332ASP-1-0.905-0.94339.622-0.087-0.0870.0000.0000.0000.000
34A333ILE0-0.024-0.01740.7170.0050.0050.0000.0000.0000.000
35A334ARG10.9170.95442.7080.0860.0860.0000.0000.0000.000
36A335LEU0-0.029-0.01742.8950.0040.0040.0000.0000.0000.000
37A336ALA00.0610.03745.9160.0040.0040.0000.0000.0000.000
38A337ASP-1-0.942-0.96247.766-0.067-0.0670.0000.0000.0000.000
39A338MET0-0.099-0.06148.3150.0040.0040.0000.0000.0000.000
40A339ASP-1-0.827-0.89350.462-0.060-0.0600.0000.0000.0000.000
41A340LEU00.0100.00852.9930.0030.0030.0000.0000.0000.000
42A341ARG10.9370.97052.0530.0600.0600.0000.0000.0000.000
43A342PHE00.0190.00953.1260.0020.0020.0000.0000.0000.000
44A343GLN00.0020.01656.7580.0010.0010.0000.0000.0000.000
45A344VAL0-0.076-0.04758.6830.0020.0020.0000.0000.0000.000
46A345LEU0-0.029-0.01959.9470.0020.0020.0000.0000.0000.000
47A346GLU-1-0.944-0.98059.433-0.046-0.0460.0000.0000.0000.000
48A347THR0-0.115-0.07362.6520.0020.0020.0000.0000.0000.000
49A348ALA00.0090.03064.6940.0010.0010.0000.0000.0000.000
50A349SER0-0.036-0.04466.3460.0000.0000.0000.0000.0000.000
51A350TYR0-0.003-0.01965.2110.0000.0000.0000.0000.0000.000
52A351ASN00.0530.01971.8570.0000.0000.0000.0000.0000.000
53A352GLY00.0500.02174.1490.0010.0010.0000.0000.0000.000
54A353VAL0-0.087-0.03475.3390.0000.0000.0000.0000.0000.000
55A354LEU00.0430.05168.351-0.001-0.0010.0000.0000.0000.000
56A355ILE0-0.019-0.02270.9900.0010.0010.0000.0000.0000.000
57A356TRP00.0640.03564.0190.0000.0000.0000.0000.0000.000
58A357LYS10.8490.92965.6050.0370.0370.0000.0000.0000.000
59A358ILE0-0.025-0.00164.188-0.001-0.0010.0000.0000.0000.000
60A359ARG11.0130.99561.1030.0440.0440.0000.0000.0000.000
61A360ASP-1-0.804-0.89858.922-0.047-0.0470.0000.0000.0000.000
62A361TYR0-0.028-0.05362.666-0.001-0.0010.0000.0000.0000.000
63A362LYS11.0391.01264.0940.0360.0360.0000.0000.0000.000
64A363ARG10.7600.85956.6620.0480.0480.0000.0000.0000.000
65A364ARG10.8900.94857.9850.0440.0440.0000.0000.0000.000
66A365LYS10.8070.89961.9820.0330.0330.0000.0000.0000.000
67A366GLN0-0.003-0.03561.9100.0010.0010.0000.0000.0000.000
68A367GLU-1-0.811-0.88157.261-0.048-0.0480.0000.0000.0000.000
69A368ALA00.0050.01860.6050.0000.0000.0000.0000.0000.000
70A369VAL0-0.032-0.01763.5170.0000.0000.0000.0000.0000.000
71A370MET0-0.076-0.03058.5830.0000.0000.0000.0000.0000.000
72A371GLY00.0240.01059.498-0.001-0.0010.0000.0000.0000.000
73A372LYS10.9170.96055.6080.0460.0460.0000.0000.0000.000
74A373THR0-0.021-0.02756.768-0.002-0.0020.0000.0000.0000.000
75A374LEU0-0.0190.00859.3550.0010.0010.0000.0000.0000.000
76A375SER0-0.014-0.00462.0500.0020.0020.0000.0000.0000.000
77A376LEU0-0.026-0.02261.040-0.002-0.0020.0000.0000.0000.000
78A377TYR00.0570.01261.4420.0020.0020.0000.0000.0000.000
79A378SER0-0.0060.00562.874-0.001-0.0010.0000.0000.0000.000
80A379GLN0-0.005-0.00162.769-0.001-0.0010.0000.0000.0000.000
81A380PRO0-0.020-0.03362.2690.0010.0010.0000.0000.0000.000
82A381PHE0-0.0160.01665.2110.0000.0000.0000.0000.0000.000
83A382TYR00.015-0.00464.4370.0000.0000.0000.0000.0000.000
84A383THR00.0300.00271.0660.0000.0000.0000.0000.0000.000
85A384GLY00.1010.05373.1130.0010.0010.0000.0000.0000.000
86A385TYR0-0.021-0.02269.263-0.001-0.0010.0000.0000.0000.000
87A386PHE0-0.0200.00367.698-0.001-0.0010.0000.0000.0000.000
88A387GLY00.0040.01471.0870.0010.0010.0000.0000.0000.000
89A388TYR0-0.019-0.04670.991-0.001-0.0010.0000.0000.0000.000
90A389LYS10.9761.00261.8980.0430.0430.0000.0000.0000.000
91A390MET0-0.113-0.03668.6600.0010.0010.0000.0000.0000.000
92A391CYS00.0260.01166.031-0.001-0.0010.0000.0000.0000.000
93A392ALA00.0080.00667.6850.0010.0010.0000.0000.0000.000
94A393ARG10.8810.94263.7130.0380.0380.0000.0000.0000.000
95A394VAL00.0060.00765.9620.0010.0010.0000.0000.0000.000
96A395TYR00.0150.00466.157-0.002-0.0020.0000.0000.0000.000
97A396LEU0-0.006-0.00264.5160.0010.0010.0000.0000.0000.000
98A397ASN00.0340.00967.0520.0020.0020.0000.0000.0000.000
99A398GLY00.0360.03468.7130.0000.0000.0000.0000.0000.000
100A399ASP-1-0.799-0.93568.832-0.036-0.0360.0000.0000.0000.000
101A400GLY0-0.026-0.00470.7210.0010.0010.0000.0000.0000.000
102A401MET00.038-0.00173.3220.0000.0000.0000.0000.0000.000
103A402GLY00.0420.01275.4840.0010.0010.0000.0000.0000.000
104A403LYS10.8510.94267.6030.0340.0340.0000.0000.0000.000
105A404GLY0-0.054-0.01971.1330.0010.0010.0000.0000.0000.000
106A405THR0-0.001-0.00472.0560.0000.0000.0000.0000.0000.000
107A406HIS0-0.015-0.00574.0430.0000.0000.0000.0000.0000.000
108A407LEU0-0.0030.02270.438-0.001-0.0010.0000.0000.0000.000
109A408SER00.004-0.01070.4750.0010.0010.0000.0000.0000.000
110A409LEU0-0.008-0.00570.500-0.001-0.0010.0000.0000.0000.000
111A410PHE00.019-0.02270.2870.0010.0010.0000.0000.0000.000
112A411PHE00.0410.01971.089-0.001-0.0010.0000.0000.0000.000
113A412VAL0-0.017-0.01866.3170.0000.0000.0000.0000.0000.000
114A413ILE00.0460.02969.2980.0000.0000.0000.0000.0000.000
115A414MET0-0.029-0.02762.5260.0000.0000.0000.0000.0000.000
116A415ARG10.9370.96759.6760.0450.0450.0000.0000.0000.000
117A416GLY0-0.040-0.01864.587-0.001-0.0010.0000.0000.0000.000
118A417GLU-1-0.960-0.98161.387-0.045-0.0450.0000.0000.0000.000
119A418TYR00.0410.00464.9590.0000.0000.0000.0000.0000.000
120A419ASP-1-0.798-0.88868.051-0.035-0.0350.0000.0000.0000.000
121A420ALA0-0.022-0.02869.367-0.001-0.0010.0000.0000.0000.000
122A421LEU00.0080.00971.5770.0010.0010.0000.0000.0000.000
123A422LEU0-0.0380.00472.2780.0010.0010.0000.0000.0000.000
124A423PRO00.0200.01075.7230.0000.0000.0000.0000.0000.000
125A424TRP00.0170.04172.165-0.001-0.0010.0000.0000.0000.000
126A425PRO0-0.006-0.02477.7110.0010.0010.0000.0000.0000.000
127A426PHE00.0180.00675.1070.0010.0010.0000.0000.0000.000
128A427LYS10.8930.93777.7580.0260.0260.0000.0000.0000.000
129A428GLN00.0320.04778.7310.0010.0010.0000.0000.0000.000
130A429LYS10.9480.96979.9880.0240.0240.0000.0000.0000.000
131A430VAL00.0310.02176.596-0.001-0.0010.0000.0000.0000.000
132A431THR00.0200.00578.8510.0010.0010.0000.0000.0000.000
133A432LEU0-0.0390.02574.958-0.001-0.0010.0000.0000.0000.000
134A433MET00.027-0.00476.5320.0010.0010.0000.0000.0000.000
135A434LEU00.0060.01973.824-0.001-0.0010.0000.0000.0000.000
136A435MET0-0.033-0.02374.9000.0010.0010.0000.0000.0000.000
137A436ASP-1-0.707-0.85076.126-0.026-0.0260.0000.0000.0000.000
138A437GLN0-0.025-0.01572.2550.0000.0000.0000.0000.0000.000
139A438GLY00.037-0.01177.4070.0000.0000.0000.0000.0000.000
140A439SER0-0.017-0.03280.5300.0000.0000.0000.0000.0000.000
141A440SER00.0070.01683.0950.0000.0000.0000.0000.0000.000
142A441ARG10.7960.92780.5210.0250.0250.0000.0000.0000.000
143A442ARG10.9751.00083.5460.0230.0230.0000.0000.0000.000
144A443HIS00.0830.04179.842-0.001-0.0010.0000.0000.0000.000
145A444LEU0-0.040-0.01579.0920.0010.0010.0000.0000.0000.000
146A445GLY00.0150.00379.571-0.001-0.0010.0000.0000.0000.000
147A446ASP-1-0.879-0.93881.225-0.024-0.0240.0000.0000.0000.000
148A447ALA0-0.047-0.02681.017-0.001-0.0010.0000.0000.0000.000
149A448PHE00.0160.00376.6600.0000.0000.0000.0000.0000.000
150A449LYS10.9570.96681.8530.0230.0230.0000.0000.0000.000
151A450PRO0-0.0140.00678.7820.0000.0000.0000.0000.0000.000
152A451ASP-1-0.780-0.87480.265-0.025-0.0250.0000.0000.0000.000
153A452PRO0-0.005-0.00580.337-0.001-0.0010.0000.0000.0000.000
154A453ASN0-0.025-0.02980.5020.0000.0000.0000.0000.0000.000
155A454SER00.0630.04376.970-0.001-0.0010.0000.0000.0000.000
156A455SER0-0.046-0.01673.1170.0000.0000.0000.0000.0000.000
157A456SER0-0.059-0.02872.680-0.001-0.0010.0000.0000.0000.000
158A457PHE00.0540.01873.312-0.001-0.0010.0000.0000.0000.000
159A458LYS10.8300.89973.4890.0290.0290.0000.0000.0000.000
160A459LYS10.8690.93067.3550.0360.0360.0000.0000.0000.000
161A460PRO0-0.0070.02167.3090.0000.0000.0000.0000.0000.000
162A461THR00.0090.03165.414-0.001-0.0010.0000.0000.0000.000
163A462GLY00.0220.00662.940-0.001-0.0010.0000.0000.0000.000
164A463GLU-1-0.925-0.97657.756-0.049-0.0490.0000.0000.0000.000
165A464MET00.0050.00260.6750.0010.0010.0000.0000.0000.000
166A465ASN0-0.0030.00564.9040.0010.0010.0000.0000.0000.000
167A466ILE00.0220.00367.529-0.001-0.0010.0000.0000.0000.000
168A467ALA0-0.0160.00468.3370.0010.0010.0000.0000.0000.000
169A468SER0-0.022-0.03970.3330.0010.0010.0000.0000.0000.000
170A469GLY0-0.0320.00773.9620.0000.0000.0000.0000.0000.000
171A470CYS00.0210.01474.9030.0010.0010.0000.0000.0000.000
172A471PRO0-0.024-0.01874.365-0.001-0.0010.0000.0000.0000.000
173A472VAL0-0.0110.01675.043-0.001-0.0010.0000.0000.0000.000
174A473PHE0-0.0520.00675.8890.0000.0000.0000.0000.0000.000
175A474VAL00.0370.01076.6760.0010.0010.0000.0000.0000.000
176A475ALA00.0850.04276.394-0.001-0.0010.0000.0000.0000.000
177A476GLN00.0540.01871.2470.0000.0000.0000.0000.0000.000
178A477THR00.0010.00275.1880.0000.0000.0000.0000.0000.000
179A478VAL0-0.013-0.00977.6910.0010.0010.0000.0000.0000.000
180A479LEU0-0.042-0.00972.2820.0000.0000.0000.0000.0000.000
181A480GLU-1-0.794-0.88671.183-0.032-0.0320.0000.0000.0000.000
182A481ASN0-0.081-0.02174.8840.0000.0000.0000.0000.0000.000
183A482GLY0-0.036-0.03677.4420.0010.0010.0000.0000.0000.000
184A483THR0-0.027-0.03476.860-0.001-0.0010.0000.0000.0000.000
185A484TYR0-0.056-0.03975.3000.0000.0000.0000.0000.0000.000
186A485ILE0-0.0200.03470.156-0.001-0.0010.0000.0000.0000.000
187A486LYS10.8680.92871.4940.0310.0310.0000.0000.0000.000
188A487ASP-1-0.865-0.93368.005-0.033-0.0330.0000.0000.0000.000
189A488ASP-1-0.823-0.91463.988-0.039-0.0390.0000.0000.0000.000
190A489THR0-0.078-0.02465.490-0.002-0.0020.0000.0000.0000.000
191A490ILE00.0570.03867.6920.0010.0010.0000.0000.0000.000
192A491PHE00.022-0.01069.010-0.001-0.0010.0000.0000.0000.000
193A492ILE0-0.0070.01269.6140.0010.0010.0000.0000.0000.000
194A493LYS10.9230.95671.9860.0280.0280.0000.0000.0000.000
195A494VAL00.011-0.00472.1640.0000.0000.0000.0000.0000.000
196A495ILE0-0.062-0.04975.2950.0000.0000.0000.0000.0000.000
197A496VAL0-0.0130.00374.9530.0010.0010.0000.0000.0000.000
198A497ASP-1-0.908-0.96078.059-0.025-0.0250.0000.0000.0000.000
199A498THR00.003-0.01177.3150.0000.0000.0000.0000.0000.000
200A499SER00.0120.01780.5840.0000.0000.0000.0000.0000.000
201A500ASP-1-0.937-0.93783.780-0.023-0.0230.0000.0000.0000.000
202A501LEU0-0.118-0.08980.4550.0000.0000.0000.0000.0000.000
203A502PRO0-0.027-0.00982.125-0.001-0.0010.0000.0000.0000.000
204A503ASP-1-0.872-0.92677.798-0.029-0.0290.0000.0000.0000.000
205A504PRO0-0.095-0.03679.1680.0010.0010.0000.0000.0000.000