FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: LL249

Calculation Name: 2FB5-A-Xray311

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2FB5

Chain ID: A

ChEMBL ID:

UniProt ID: Q812L9

Base Structure: X-ray

Registration Date: 2021-09-06

Reference: C. Watanabe, S. Koyama, K. Kamisaka, D. Takaya, T. Honma et. al., Interaction energy analysis of Apo structure dataset on FMODB, To be pubulished.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 1.20200116
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 205
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver.1 Rev. 15 / 20190524
Total energy (hartree)
FMO2-HF: Electronic energy -2153639.102778
FMO2-HF: Nuclear repulsion 2074403.683483
FMO2-HF: Total energy -79235.419296
FMO2-MP2: Total energy -79465.851879


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:ACE )


Summations of interaction energy for fragment #1(A:1:ACE )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-3.865-1.2422.547-2.626-2.544-0.019
Interaction energy analysis for fragmet #1(A:1:ACE )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.015 / q_NPA : -0.014
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ASN 0-0.049-0.0203.6110.1701.6260.000-0.759-0.697-0.001
4A4ALA 00.1060.0395.494-0.067-0.0670.0000.0000.0000.000
5A5MET 0-0.0180.0047.7940.1350.1350.0000.0000.0000.000
6A6HIS 0-0.040-0.0263.7550.0510.1470.000-0.026-0.0690.000
7A7GLU -1-0.780-0.8902.555-2.541-1.7552.543-1.729-1.600-0.018
8A8TRP 0-0.0230.0006.1220.1880.1880.0000.0000.0000.000
9A9GLY 00.0390.0139.5520.0710.0710.0000.0000.0000.000
10A10LEU 0-0.002-0.0015.0820.1100.1100.0000.0000.0000.000
11A11SER 0-0.002-0.0119.1430.0170.0170.0000.0000.0000.000
12A12GLU -1-0.930-0.98011.228-0.107-0.1070.0000.0000.0000.000
13A13GLU -1-0.896-0.95412.3610.0580.0580.0000.0000.0000.000
14A14LEU 0-0.0040.01610.3740.0090.0090.0000.0000.0000.000
15A15LYS 10.8660.95614.2990.1650.1650.0000.0000.0000.000
16A16ILE 0-0.014-0.00616.9920.0080.0080.0000.0000.0000.000
17A17GLN 00.0340.00814.8410.0130.0130.0000.0000.0000.000
18A18THR 0-0.026-0.02417.6640.0010.0010.0000.0000.0000.000
19A19LYS 10.9200.95720.1590.0670.0670.0000.0000.0000.000
20A20GLN 00.0400.02321.3690.0080.0080.0000.0000.0000.000
21A21MET 0-0.0170.00322.6640.0050.0050.0000.0000.0000.000
22A22ILE 0-0.027-0.01524.1480.0000.0000.0000.0000.0000.000
23A23GLU -1-0.902-0.94326.481-0.007-0.0070.0000.0000.0000.000
24A24ILE 0-0.058-0.03325.6470.0030.0030.0000.0000.0000.000
25A25ALA 00.0150.00628.6590.0010.0010.0000.0000.0000.000
26A26GLU -1-0.916-0.96830.066-0.023-0.0230.0000.0000.0000.000
27A27LYS 10.9330.96932.138-0.007-0.0070.0000.0000.0000.000
28A28GLU -1-0.843-0.92933.2300.0080.0080.0000.0000.0000.000
29A29LEU 00.0230.00833.8440.0000.0000.0000.0000.0000.000
30A30SER 0-0.115-0.05836.6100.0000.0000.0000.0000.0000.000
31A31ILE 0-0.021-0.01637.3660.0010.0010.0000.0000.0000.000
32A32MET 00.0020.00837.1850.0000.0000.0000.0000.0000.000
33A33ARG 10.9310.95739.7450.0090.0090.0000.0000.0000.000
34A34ASN 0-0.047-0.02942.246-0.001-0.0010.0000.0000.0000.000
35A35ALA 0-0.009-0.00543.6080.0000.0000.0000.0000.0000.000
36A36ILE 0-0.025-0.01045.2740.0000.0000.0000.0000.0000.000
37A37ASP -1-0.917-0.94746.970-0.004-0.0040.0000.0000.0000.000
38A38LYS 10.8530.93547.948-0.003-0.0030.0000.0000.0000.000
39A39GLU -1-0.893-0.95650.2620.0000.0000.0000.0000.0000.000
40A40ASP -1-1.031-1.00351.1790.0060.0060.0000.0000.0000.000
41A41GLU -1-0.960-0.97845.1780.0070.0070.0000.0000.0000.000
42A42CYS 00.0170.00746.636-0.001-0.0010.0000.0000.0000.000
43A43ILE 00.0360.00742.2650.0010.0010.0000.0000.0000.000
44A44LEU 00.015-0.00441.5260.0000.0000.0000.0000.0000.000
45A45CYS 0-0.091-0.03841.2210.0000.0000.0000.0000.0000.000
46A46LYS 10.9860.99437.665-0.006-0.0060.0000.0000.0000.000
47A47MET 0-0.032-0.01736.513-0.001-0.0010.0000.0000.0000.000
48A48GLU -1-0.936-0.96233.8930.0120.0120.0000.0000.0000.000
49A49ASP -1-0.864-0.92732.6370.0130.0130.0000.0000.0000.000
50A50ILE 0-0.024-0.01631.441-0.001-0.0010.0000.0000.0000.000
51A51HIS 0-0.004-0.01431.128-0.005-0.0050.0000.0000.0000.000
52A52HIS 00.0270.02426.051-0.006-0.0060.0000.0000.0000.000
53A53MET 0-0.040-0.00826.985-0.002-0.0020.0000.0000.0000.000
54A54LEU 00.0270.00426.333-0.004-0.0040.0000.0000.0000.000
55A55ALA 0-0.0060.00725.918-0.007-0.0070.0000.0000.0000.000
56A56ASN 0-0.002-0.01022.621-0.003-0.0030.0000.0000.0000.000
57A57VAL 0-0.023-0.00321.575-0.005-0.0050.0000.0000.0000.000
58A58GLN 0-0.041-0.01921.610-0.020-0.0200.0000.0000.0000.000
59A59THR 00.0330.02018.125-0.013-0.0130.0000.0000.0000.000
60A60LEU 0-0.053-0.02117.166-0.010-0.0100.0000.0000.0000.000
61A61ALA 00.0420.01916.629-0.022-0.0220.0000.0000.0000.000
62A62ALA 0-0.0110.00317.294-0.030-0.0300.0000.0000.0000.000
63A63THR 00.002-0.01212.072-0.032-0.0320.0000.0000.0000.000
64A64TYR 0-0.040-0.01412.423-0.064-0.0640.0000.0000.0000.000
65A65TYR 0-0.007-0.01613.198-0.059-0.0590.0000.0000.0000.000
66A66ILE 0-0.0100.01010.753-0.058-0.0580.0000.0000.0000.000
67A67GLN 0-0.033-0.0245.935-0.069-0.0690.0000.0000.0000.000
68A68ALA 0-0.017-0.0089.506-0.178-0.1780.0000.0000.0000.000
69A69TYR 0-0.048-0.03712.100-0.037-0.0370.0000.0000.0000.000
70A70LEU 00.007-0.00210.2470.0070.0070.0000.0000.0000.000
71A71SER 00.0030.0235.929-0.081-0.0810.0000.0000.0000.000
72A72PRO 0-0.045-0.0186.827-0.489-0.4890.0000.0000.0000.000
73A73TYR 0-0.042-0.0239.3080.0830.0830.0000.0000.0000.000
74A74THR 0-0.060-0.0478.4470.1940.1940.0000.0000.0000.000
75A75GLU -1-0.832-0.8983.961-2.044-1.7590.004-0.112-0.1780.000
76A76SER 0-0.049-0.0525.4440.6440.6440.0000.0000.0000.000
77A77SER 00.0230.0097.1030.2120.2120.0000.0000.0000.000
78A78SER 00.0540.0337.6870.0620.0620.0000.0000.0000.000
79A79PHE 0-0.002-0.0039.4190.0470.0470.0000.0000.0000.000
80A80ILE 00.0320.01111.4080.0190.0190.0000.0000.0000.000
81A81THR 0-0.001-0.00511.6950.0190.0190.0000.0000.0000.000
82A82THR 0-0.016-0.00513.2440.0310.0310.0000.0000.0000.000
83A83ALA 0-0.0060.00115.4790.0040.0040.0000.0000.0000.000
84A84ILE 0-0.017-0.00816.9470.0060.0060.0000.0000.0000.000
85A85GLN 0-0.029-0.03816.4650.0150.0150.0000.0000.0000.000
86A86HIS 0-0.094-0.06819.3080.0120.0120.0000.0000.0000.000
87A87LEU 0-0.033-0.02020.5060.0020.0020.0000.0000.0000.000
88A88SER 0-0.032-0.03922.5330.0030.0030.0000.0000.0000.000
89A89ALA 0-0.010-0.00324.0070.0030.0030.0000.0000.0000.000
90A90ARG 10.7650.88023.0390.0000.0000.0000.0000.0000.000
91A91LYS 10.8970.95827.3610.0170.0170.0000.0000.0000.000
92A92HIS 0-0.0070.00026.002-0.001-0.0010.0000.0000.0000.000
93A93GLY 00.0180.00525.890-0.005-0.0050.0000.0000.0000.000
94A94ALA 0-0.022-0.01022.4040.0010.0010.0000.0000.0000.000
95A95LEU 0-0.026-0.00923.176-0.002-0.0020.0000.0000.0000.000
96A96ILE 00.0030.00016.7970.0030.0030.0000.0000.0000.000
97A97VAL 00.0160.01518.976-0.013-0.0130.0000.0000.0000.000
98A98VAL 0-0.017-0.01112.769-0.007-0.0070.0000.0000.0000.000
99A99GLU -1-0.820-0.92016.096-0.266-0.2660.0000.0000.0000.000
100A100ARG 10.7870.88614.3850.3230.3230.0000.0000.0000.000
101A101ASN 0-0.067-0.03516.020-0.028-0.0280.0000.0000.0000.000
102A102GLU -1-0.953-0.97617.873-0.175-0.1750.0000.0000.0000.000
103A103THR 0-0.043-0.01820.650-0.009-0.0090.0000.0000.0000.000
104A104LEU 00.034-0.00320.1960.0140.0140.0000.0000.0000.000
105A105GLU -1-0.898-0.95123.944-0.137-0.1370.0000.0000.0000.000
106A106ALA 0-0.028-0.01226.3200.0110.0110.0000.0000.0000.000
107A107LEU 0-0.073-0.03925.9380.0090.0090.0000.0000.0000.000
108A108ILE 0-0.0120.00823.2700.0040.0040.0000.0000.0000.000
109A109GLN 0-0.022-0.00727.687-0.002-0.0020.0000.0000.0000.000
110A110THR 0-0.022-0.02626.833-0.003-0.0030.0000.0000.0000.000
111A111GLY 00.0390.04827.9920.0070.0070.0000.0000.0000.000
112A112THR 0-0.049-0.02827.2820.0070.0070.0000.0000.0000.000
113A113THR 0-0.028-0.02624.474-0.010-0.0100.0000.0000.0000.000
114A114LEU 0-0.061-0.04122.0200.0100.0100.0000.0000.0000.000
115A115ASN 0-0.069-0.03420.055-0.004-0.0040.0000.0000.0000.000
116A116ALA 00.0050.01719.1810.0100.0100.0000.0000.0000.000
117A117HIS 00.0530.01711.700-0.055-0.0550.0000.0000.0000.000
118A118LEU 00.0080.01812.0620.0210.0210.0000.0000.0000.000
119A119THR 0-0.014-0.01413.3070.0290.0290.0000.0000.0000.000
120A120ALA 00.0640.02315.027-0.019-0.0190.0000.0000.0000.000
121A121PRO 00.0330.00516.450-0.010-0.0100.0000.0000.0000.000
122A122LEU 0-0.0170.00618.691-0.006-0.0060.0000.0000.0000.000
123A123LEU 00.0350.00715.284-0.007-0.0070.0000.0000.0000.000
124A124GLU -1-0.775-0.88419.5140.0060.0060.0000.0000.0000.000
125A125SER 0-0.064-0.02121.9880.0000.0000.0000.0000.0000.000
126A126ILE 00.0070.00321.116-0.001-0.0010.0000.0000.0000.000
127A127PHE 00.0140.01321.133-0.002-0.0020.0000.0000.0000.000
128A128TYR 0-0.0010.01525.6460.0050.0050.0000.0000.0000.000
129A129PRO 00.0440.02028.084-0.002-0.0020.0000.0000.0000.000
130A130GLY 0-0.007-0.00331.2850.0040.0040.0000.0000.0000.000
131A131ASN 0-0.081-0.04527.9900.0010.0010.0000.0000.0000.000
132A132PRO 00.004-0.01031.564-0.003-0.0030.0000.0000.0000.000
133A133LEU 0-0.031-0.01826.182-0.004-0.0040.0000.0000.0000.000
134A134HIS 0-0.056-0.02927.461-0.007-0.0070.0000.0000.0000.000
135A135ASP -1-0.963-0.96728.345-0.057-0.0570.0000.0000.0000.000
136A136GLY 00.0350.01528.442-0.001-0.0010.0000.0000.0000.000
137A137ALA 0-0.052-0.03323.697-0.001-0.0010.0000.0000.0000.000
138A138VAL 00.0020.00019.0090.0040.0040.0000.0000.0000.000
139A139LEU 0-0.039-0.00118.961-0.011-0.0110.0000.0000.0000.000
140A140VAL 0-0.005-0.00613.3510.0140.0140.0000.0000.0000.000
141A141LYS 10.9150.95315.0590.3210.3210.0000.0000.0000.000
142A142ASN 00.0360.0059.042-0.097-0.0970.0000.0000.0000.000
143A143ASN 00.0220.0387.303-0.043-0.0430.0000.0000.0000.000
144A144HIS 00.0020.00111.2460.1000.1000.0000.0000.0000.000
145A145ILE 0-0.010-0.00115.057-0.028-0.0280.0000.0000.0000.000
146A146VAL 00.0360.01217.8670.0190.0190.0000.0000.0000.000
147A147SER 00.0610.03320.2750.0160.0160.0000.0000.0000.000
148A148ALA 00.0130.00922.310-0.010-0.0100.0000.0000.0000.000
149A149ALA 00.0400.02524.7690.0040.0040.0000.0000.0000.000
150A150ASN 0-0.009-0.00323.7850.0120.0120.0000.0000.0000.000
151A151ILE 00.0150.00427.5610.0020.0020.0000.0000.0000.000
152A152LEU 00.0160.00824.477-0.005-0.0050.0000.0000.0000.000
153A153PRO 0-0.0190.00528.1520.0090.0090.0000.0000.0000.000
154A154LEU 0-0.014-0.01430.180-0.003-0.0030.0000.0000.0000.000
155A155THR 0-0.018-0.04731.2710.0050.0050.0000.0000.0000.000
156A156LYS 10.8990.92833.0000.0730.0730.0000.0000.0000.000
157A157SER 0-0.0170.01134.2220.0060.0060.0000.0000.0000.000
158A158THR 00.035-0.00436.1430.0010.0010.0000.0000.0000.000
159A159GLU -1-0.994-0.98136.195-0.053-0.0530.0000.0000.0000.000
160A160VAL 0-0.060-0.01632.732-0.003-0.0030.0000.0000.0000.000
161A161ASP -1-0.851-0.93533.375-0.049-0.0490.0000.0000.0000.000
162A162PRO 0-0.038-0.04135.332-0.002-0.0020.0000.0000.0000.000
163A163GLU -1-0.937-0.95336.284-0.036-0.0360.0000.0000.0000.000
164A164LEU 0-0.070-0.01430.549-0.002-0.0020.0000.0000.0000.000
165A165GLY 00.0710.03033.0620.0010.0010.0000.0000.0000.000
166A166THR 0-0.017-0.03932.338-0.005-0.0050.0000.0000.0000.000
167A167ARG 10.9350.97826.8080.0540.0540.0000.0000.0000.000
168A168HIS 00.0500.02127.249-0.004-0.0040.0000.0000.0000.000
169A169ARG 10.9550.97828.4610.0560.0560.0000.0000.0000.000
170A170ALA 00.0180.01528.315-0.003-0.0030.0000.0000.0000.000
171A171ALA 00.0120.01724.219-0.008-0.0080.0000.0000.0000.000
172A172ILE 00.0100.00325.368-0.010-0.0100.0000.0000.0000.000
173A173GLY 00.0270.01527.519-0.005-0.0050.0000.0000.0000.000
174A174LEU 0-0.013-0.01322.9120.0000.0000.0000.0000.0000.000
175A175SER 0-0.048-0.02723.608-0.008-0.0080.0000.0000.0000.000
176A176GLU -1-0.839-0.88924.719-0.098-0.0980.0000.0000.0000.000
177A177LYS 10.8390.91827.2080.1030.1030.0000.0000.0000.000
178A178SER 00.0240.02823.099-0.006-0.0060.0000.0000.0000.000
179A179ASP -1-0.784-0.87918.859-0.297-0.2970.0000.0000.0000.000
180A180ALA 00.0110.00318.677-0.036-0.0360.0000.0000.0000.000
181A181LEU 0-0.0050.01015.3510.0160.0160.0000.0000.0000.000
182A182ILE 0-0.068-0.03218.108-0.004-0.0040.0000.0000.0000.000
183A183LEU 00.0140.01215.2180.0150.0150.0000.0000.0000.000
184A184VAL 0-0.014-0.01719.8290.0090.0090.0000.0000.0000.000
185A185VAL 00.0150.02021.9990.0010.0010.0000.0000.0000.000
186A186SER 0-0.001-0.00324.4480.0040.0040.0000.0000.0000.000
187A187GLU -1-0.853-0.95428.202-0.039-0.0390.0000.0000.0000.000
188A188GLU -1-0.956-0.95430.377-0.035-0.0350.0000.0000.0000.000
189A189THR 0-0.012-0.02630.2430.0030.0030.0000.0000.0000.000
190A190GLY 00.0330.02227.2320.0040.0040.0000.0000.0000.000
191A191ARG 10.9471.00925.6090.0500.0500.0000.0000.0000.000
192A192THR 00.0190.01121.104-0.002-0.0020.0000.0000.0000.000
193A193SER 0-0.057-0.03522.7300.0050.0050.0000.0000.0000.000
194A194PHE 00.0310.01018.301-0.012-0.0120.0000.0000.0000.000
195A195ALA 0-0.0140.01021.0160.0110.0110.0000.0000.0000.000
196A196LEU 00.007-0.02118.628-0.022-0.0220.0000.0000.0000.000
197A197ASN 00.0050.00022.0360.0130.0130.0000.0000.0000.000
198A198GLY 00.0240.01424.7460.0100.0100.0000.0000.0000.000
199A199ILE 0-0.038-0.00125.6430.0120.0120.0000.0000.0000.000
200A200LEU 0-0.006-0.00724.757-0.013-0.0130.0000.0000.0000.000
201A201TYR 0-0.001-0.00222.0050.0120.0120.0000.0000.0000.000
202A202THR 0-0.050-0.03022.988-0.002-0.0020.0000.0000.0000.000
203A203ILE 0-0.016-0.00917.970-0.007-0.0070.0000.0000.0000.000
204A204SER 00.015-0.00820.7290.0100.0100.0000.0000.0000.000
205A205LEU -1-0.852-0.88915.371-0.020-0.0200.0000.0000.0000.000