FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: LN149

Calculation Name: 3CTA-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3CTA

Chain ID: A

ChEMBL ID:

UniProt ID: Q9HJA6

Base Structure: X-ray

Registration Date: 2023-09-24

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 192
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2004517.348176
FMO2-HF: Nuclear repulsion 1929494.760411
FMO2-HF: Total energy -75022.587765
FMO2-MP2: Total energy -75245.173946


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:5:ASP)


Summations of interaction energy for fragment #1(A:5:ASP)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-186.848-176.4867.445-8.958-8.8510.069
Interaction energy analysis for fragmet #1(A:5:ASP)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.834 / q_NPA : -0.943
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A7TYR0-0.018-0.0323.205-11.525-8.1920.257-1.568-2.0230.011
4A8TYR00.0530.0511.911-13.034-12.2736.889-3.986-3.6640.025
5A9ARG10.9080.9492.724-92.234-85.9660.299-3.404-3.1640.033
6A10ALA00.0170.0145.405-7.017-7.0170.0000.0000.0000.000
7A11ILE00.0080.0026.616-4.313-4.3130.0000.0000.0000.000
8A12LYS10.9660.9867.476-38.040-38.0400.0000.0000.0000.000
9A13LYS10.9170.9679.130-29.424-29.4240.0000.0000.0000.000
10A14ILE0-0.027-0.01711.130-2.705-2.7050.0000.0000.0000.000
11A15LYS10.8730.92412.250-19.306-19.3060.0000.0000.0000.000
12A16GLU-1-0.911-0.95512.83022.96522.9650.0000.0000.0000.000
13A17ALA0-0.026-0.02114.893-1.348-1.3480.0000.0000.0000.000
14A18ALA0-0.089-0.02816.625-1.102-1.1020.0000.0000.0000.000
15A19GLU-1-0.914-0.95418.21112.85512.8550.0000.0000.0000.000
16A20ALA00.0020.00219.2030.3540.3540.0000.0000.0000.000
17A21SER0-0.049-0.01121.495-0.167-0.1670.0000.0000.0000.000
18A22ASN00.0570.01617.9291.4541.4540.0000.0000.0000.000
19A23ARG10.9190.96618.515-12.218-12.2180.0000.0000.0000.000
20A24ALA00.0900.04217.674-0.252-0.2520.0000.0000.0000.000
21A25TYR0-0.011-0.00919.754-0.020-0.0200.0000.0000.0000.000
22A26LEU00.0310.02315.3660.2320.2320.0000.0000.0000.000
23A27THR00.0220.03119.3320.0670.0670.0000.0000.0000.000
24A28SER00.0630.01316.5750.5430.5430.0000.0000.0000.000
25A29SER00.0140.00316.7181.0541.0540.0000.0000.0000.000
26A30LYS10.9881.00617.991-15.269-15.2690.0000.0000.0000.000
27A31LEU00.0300.01311.5850.3800.3800.0000.0000.0000.000
28A32ALA0-0.021-0.01713.5251.7651.7650.0000.0000.0000.000
29A33ASP-1-0.917-0.95513.76219.00619.0060.0000.0000.0000.000
30A34MET0-0.077-0.03513.6900.6590.6590.0000.0000.0000.000
31A35LEU0-0.051-0.0358.1911.2581.2580.0000.0000.0000.000
32A36GLY00.0220.0479.7312.5472.5470.0000.0000.0000.000
33A37ILE0-0.055-0.0209.0480.6080.6080.0000.0000.0000.000
34A38SER00.0710.02912.207-1.260-1.2600.0000.0000.0000.000
35A39GLN00.0680.00314.7350.9300.9300.0000.0000.0000.000
36A40GLN00.0110.00216.8760.3510.3510.0000.0000.0000.000
37A41SER00.0230.00911.5220.4760.4760.0000.0000.0000.000
38A42ALA00.0310.02812.1761.2431.2430.0000.0000.0000.000
39A43SER0-0.058-0.04213.442-0.073-0.0730.0000.0000.0000.000
40A44ARG10.8360.88811.915-20.575-20.5750.0000.0000.0000.000
41A45ILE00.0480.0308.092-0.106-0.1060.0000.0000.0000.000
42A46ILE00.0030.00210.679-0.162-0.1620.0000.0000.0000.000
43A47ILE0-0.012-0.00913.300-0.765-0.7650.0000.0000.0000.000
44A48ASP-1-0.768-0.83710.21922.09822.0980.0000.0000.0000.000
45A49LEU0-0.007-0.0057.581-0.245-0.2450.0000.0000.0000.000
46A50GLU-1-0.865-0.91711.21015.13515.1350.0000.0000.0000.000
47A51LYS10.9190.95514.924-16.272-16.2720.0000.0000.0000.000
48A52ASN0-0.064-0.03011.654-1.386-1.3860.0000.0000.0000.000
49A53GLY00.0430.02413.2370.4320.4320.0000.0000.0000.000
50A54TYR00.0010.0238.623-0.291-0.2910.0000.0000.0000.000
51A55ILE00.001-0.00911.9450.2550.2550.0000.0000.0000.000
52A56THR00.0240.01314.609-0.540-0.5400.0000.0000.0000.000
53A57ARG10.8760.93117.918-15.817-15.8170.0000.0000.0000.000
54A58THR0-0.015-0.01219.699-0.625-0.6250.0000.0000.0000.000
55A59VAL00.0310.01423.3500.2080.2080.0000.0000.0000.000
56A60THR0-0.0020.00225.729-0.609-0.6090.0000.0000.0000.000
57A61LYS11.0010.97228.611-8.876-8.8760.0000.0000.0000.000
58A62ARG10.9530.98929.127-10.286-10.2860.0000.0000.0000.000
59A63GLY00.0330.02726.1890.2240.2240.0000.0000.0000.000
60A64GLN0-0.039-0.03419.222-0.484-0.4840.0000.0000.0000.000
61A65ILE0-0.040-0.02121.3510.2060.2060.0000.0000.0000.000
62A66LEU00.0020.00515.053-0.076-0.0760.0000.0000.0000.000
63A67ASN0-0.026-0.02418.070-0.360-0.3600.0000.0000.0000.000
64A68ILE00.0030.02012.1090.4890.4890.0000.0000.0000.000
65A69THR0-0.032-0.04414.874-0.832-0.8320.0000.0000.0000.000
66A70GLU-1-0.752-0.86915.45715.41415.4140.0000.0000.0000.000
67A71LYS10.9611.00011.938-19.553-19.5530.0000.0000.0000.000
68A72GLY0-0.003-0.00910.8631.5341.5340.0000.0000.0000.000
69A73LEU0-0.024-0.02710.9351.6681.6680.0000.0000.0000.000
70A74ASP-1-0.782-0.85612.47119.86019.8600.0000.0000.0000.000
71A75VAL0-0.0340.0046.2070.9320.9320.0000.0000.0000.000
72A76LEU0-0.049-0.0198.0051.9131.9130.0000.0000.0000.000
73A77TYR00.024-0.00210.035-0.077-0.0770.0000.0000.0000.000
74A78THR00.005-0.0089.823-1.225-1.2250.0000.0000.0000.000
75A79GLU-1-0.944-0.9486.43238.68038.6800.0000.0000.0000.000
76A80PHE0-0.031-0.0169.460-0.745-0.7450.0000.0000.0000.000
77A81ALA00.0220.02012.635-1.094-1.0940.0000.0000.0000.000
78A82ASP-1-0.873-0.9439.75924.07224.0720.0000.0000.0000.000
79A83LEU0-0.033-0.0249.839-1.040-1.0400.0000.0000.0000.000
80A84SER0-0.044-0.02013.490-1.407-1.4070.0000.0000.0000.000
81A85ARG10.8810.94713.016-20.894-20.8940.0000.0000.0000.000
82A86ILE0-0.066-0.03612.591-0.848-0.8480.0000.0000.0000.000
83A87LEU0-0.030-0.01214.345-0.444-0.4440.0000.0000.0000.000
84A88ALA0-0.0200.00717.907-0.746-0.7460.0000.0000.0000.000
85A89ILE0-0.041-0.02617.603-0.593-0.5930.0000.0000.0000.000
86A90LYN00.0230.00120.8650.3780.3780.0000.0000.0000.000
87A91ASN0-0.001-0.00619.047-0.277-0.2770.0000.0000.0000.000
88A92ASN00.0060.00622.4170.4470.4470.0000.0000.0000.000
89A93VAL0-0.0140.00322.6950.0750.0750.0000.0000.0000.000
90A94VAL00.0310.02525.960-0.340-0.3400.0000.0000.0000.000
91A95ILE0-0.029-0.00925.8200.3060.3060.0000.0000.0000.000
92A96THR0-0.017-0.02228.981-0.287-0.2870.0000.0000.0000.000
93A97GLY00.0190.00231.1730.3140.3140.0000.0000.0000.000
94A98THR0-0.071-0.02533.187-0.308-0.3080.0000.0000.0000.000
95A99VAL00.0110.01335.0910.2330.2330.0000.0000.0000.000
96A100THR0-0.044-0.02033.901-0.212-0.2120.0000.0000.0000.000
97A101SER00.0150.01137.1780.0190.0190.0000.0000.0000.000
98A114GLN00.032-0.00232.615-0.157-0.1570.0000.0000.0000.000
99A115TYR0-0.006-0.03126.2810.0650.0650.0000.0000.0000.000
100A116ILE00.0230.00431.7380.1060.1060.0000.0000.0000.000
101A117ILE00.0680.04034.937-0.008-0.0080.0000.0000.0000.000
102A118GLN00.0300.01628.3040.3380.3380.0000.0000.0000.000
103A119PHE0-0.0080.00128.8130.1280.1280.0000.0000.0000.000
104A120GLN00.0320.01032.8030.0580.0580.0000.0000.0000.000
105A121GLU-1-0.970-0.97533.6858.0678.0670.0000.0000.0000.000
106A122LYS10.8300.91226.419-10.694-10.6940.0000.0000.0000.000
107A123LEU0-0.081-0.03428.8120.2260.2260.0000.0000.0000.000
108A124GLY00.0100.02632.629-0.109-0.1090.0000.0000.0000.000
109A125ILE0-0.048-0.02734.145-0.140-0.1400.0000.0000.0000.000
110A126ILE00.011-0.00537.5130.0520.0520.0000.0000.0000.000
111A127PRO0-0.030-0.00735.5190.0090.0090.0000.0000.0000.000
112A128TYR00.0580.04737.505-0.201-0.2010.0000.0000.0000.000
113A129LEU0-0.034-0.02239.0810.0960.0960.0000.0000.0000.000
114A130GLY0-0.014-0.01237.894-0.142-0.1420.0000.0000.0000.000
115A131THR0-0.050-0.02133.031-0.009-0.0090.0000.0000.0000.000
116A132LEU00.0150.02134.020-0.232-0.2320.0000.0000.0000.000
117A133ASN00.0420.00932.4530.2260.2260.0000.0000.0000.000
118A134ILE0-0.009-0.00731.497-0.227-0.2270.0000.0000.0000.000
119A135LYS10.9400.98630.632-8.946-8.9460.0000.0000.0000.000
120A136VAL00.0040.00226.785-0.200-0.2000.0000.0000.0000.000
121A137ASP-1-0.788-0.86629.5799.2939.2930.0000.0000.0000.000
122A138GLN00.029-0.02727.8870.6110.6110.0000.0000.0000.000
123A139ALA00.001-0.00226.9310.4280.4280.0000.0000.0000.000
124A140SER00.0410.02926.9210.2050.2050.0000.0000.0000.000
125A141LEU0-0.0200.00123.3690.3560.3560.0000.0000.0000.000
126A142PRO0-0.028-0.02020.9630.6350.6350.0000.0000.0000.000
127A143GLU-1-0.850-0.92020.64113.78213.7820.0000.0000.0000.000
128A144LEU00.0010.00422.1020.3150.3150.0000.0000.0000.000
129A145ARG10.7660.84517.610-14.173-14.1730.0000.0000.0000.000
130A146LYS10.9480.98117.366-13.433-13.4330.0000.0000.0000.000
131A147ILE0-0.0010.00417.8950.6050.6050.0000.0000.0000.000
132A148ARG10.8880.94017.455-14.211-14.2110.0000.0000.0000.000
133A149GLY00.0600.05714.2370.4110.4110.0000.0000.0000.000
134A150PHE0-0.004-0.01014.4700.8080.8080.0000.0000.0000.000
135A151ARG10.9420.95413.028-18.818-18.8180.0000.0000.0000.000
136A152GLY00.0310.02818.031-0.402-0.4020.0000.0000.0000.000
137A153ILE0-0.019-0.02121.7760.2580.2580.0000.0000.0000.000
138A154HIS0-0.029-0.01520.534-0.230-0.2300.0000.0000.0000.000
139A155ILE0-0.036-0.00923.230-0.536-0.5360.0000.0000.0000.000
140A156GLU-1-0.902-0.95823.70812.37812.3780.0000.0000.0000.000
141A157GLY00.0550.03024.161-0.367-0.3670.0000.0000.0000.000
142A158PHE0-0.036-0.02525.456-0.217-0.2170.0000.0000.0000.000
143A159LYS10.9490.97627.963-9.366-9.3660.0000.0000.0000.000
144A160THR00.0310.01429.854-0.087-0.0870.0000.0000.0000.000
145A161GLU-1-0.954-1.00233.1177.6397.6390.0000.0000.0000.000
146A162ASP-1-0.814-0.88033.8968.6128.6120.0000.0000.0000.000
147A163ARG10.7630.87429.082-8.757-8.7570.0000.0000.0000.000
148A164THR0-0.0040.00624.486-0.202-0.2020.0000.0000.0000.000
149A165PHE0-0.015-0.00626.2540.1770.1770.0000.0000.0000.000
150A166GLY0-0.025-0.01622.8410.2000.2000.0000.0000.0000.000
151A167SER00.0530.02720.996-0.562-0.5620.0000.0000.0000.000
152A168VAL0-0.052-0.02322.2360.2620.2620.0000.0000.0000.000
153A169LYS10.8100.92116.542-15.798-15.7980.0000.0000.0000.000
154A170ALA00.0360.01522.635-0.293-0.2930.0000.0000.0000.000
155A171PHE0-0.027-0.01519.7940.3010.3010.0000.0000.0000.000
156A172PRO00.0380.02925.805-0.333-0.3330.0000.0000.0000.000
157A173ALA0-0.018-0.01028.3930.3340.3340.0000.0000.0000.000
158A174LYS10.9490.97430.660-9.009-9.0090.0000.0000.0000.000
159A175ILE00.0470.02433.7710.1580.1580.0000.0000.0000.000
160A176GLN0-0.002-0.00636.119-0.282-0.2820.0000.0000.0000.000
161A177ASN00.010-0.01137.6880.0160.0160.0000.0000.0000.000
162A178ILE0-0.0100.01338.547-0.093-0.0930.0000.0000.0000.000
163A179PRO00.001-0.00835.1760.2320.2320.0000.0000.0000.000
164A180CYS0-0.0500.00133.677-0.130-0.1300.0000.0000.0000.000
165A181PHE00.0540.01529.1310.3060.3060.0000.0000.0000.000
166A182VAL00.0060.01125.623-0.169-0.1690.0000.0000.0000.000
167A183ILE00.0070.00926.3660.3640.3640.0000.0000.0000.000
168A184MET0-0.0030.00321.0920.2960.2960.0000.0000.0000.000
169A185PRO00.0430.02321.2650.0650.0650.0000.0000.0000.000
170A186GLU-1-0.807-0.89017.22714.51414.5140.0000.0000.0000.000
171A187ARG10.8300.91216.673-12.534-12.5340.0000.0000.0000.000
172A188THR0-0.0090.00015.223-0.871-0.8710.0000.0000.0000.000
173A189VAL00.0340.02617.7910.1280.1280.0000.0000.0000.000
174A190TYR0-0.132-0.12214.254-0.038-0.0380.0000.0000.0000.000
175A191THR00.0180.01320.820-0.395-0.3950.0000.0000.0000.000
176A192ASP-1-0.898-0.95924.13610.75610.7560.0000.0000.0000.000
177A193VAL0-0.016-0.01126.538-0.264-0.2640.0000.0000.0000.000
178A194ILE0-0.041-0.01625.5980.3610.3610.0000.0000.0000.000
179A195GLU-1-0.868-0.93928.0859.3409.3400.0000.0000.0000.000
180A196ILE0-0.056-0.02929.2880.2850.2850.0000.0000.0000.000
181A197ILE00.0110.00631.323-0.272-0.2720.0000.0000.0000.000
182A198SER00.005-0.02433.6920.1830.1830.0000.0000.0000.000
183A199ASP-1-0.881-0.92736.4087.4097.4090.0000.0000.0000.000
184A212ASP-1-0.890-0.93740.7527.1377.1370.0000.0000.0000.000
185A213ARG10.7970.85734.767-8.412-8.4120.0000.0000.0000.000
186A214VAL00.0220.00934.370-0.126-0.1260.0000.0000.0000.000
187A215SER0-0.018-0.01333.7060.3340.3340.0000.0000.0000.000
188A216VAL0-0.004-0.00630.356-0.201-0.2010.0000.0000.0000.000
189A217GLU-1-0.888-0.93430.1439.6759.6750.0000.0000.0000.000
190A218VAL0-0.017-0.03225.145-0.099-0.0990.0000.0000.0000.000
191A219TYR0-0.070-0.03026.4410.2260.2260.0000.0000.0000.000
192A220THR0-0.037-0.02520.9240.1960.1960.0000.0000.0000.000