FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: LN8J9

Calculation Name: 3O44-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3O44

Chain ID: A

ChEMBL ID:

UniProt ID: P09545

Base Structure: X-ray

Registration Date: 2023-09-24

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 578
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -10853940.503563
FMO2-HF: Nuclear repulsion 10628908.628417
FMO2-HF: Total energy -225031.875146
FMO2-MP2: Total energy -225696.394425


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:136:THR)


Summations of interaction energy for fragment #1(A:136:THR)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-16.4-9.615.953-4.916-7.825-0.017
Interaction energy analysis for fragmet #1(A:136:THR)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.015 / q_NPA : -0.010
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A138THR00.0200.0333.460-3.205-0.111-0.002-1.634-1.4580.003
4A139LEU00.0090.0105.4560.7180.786-0.001-0.002-0.0650.000
5A140PRO0-0.0560.0056.7830.6960.6960.0000.0000.0000.000
6A141HIS10.8290.8797.900-2.220-2.2200.0000.0000.0000.000
7A142VAL00.0520.05210.4650.0480.0480.0000.0000.0000.000
8A143ALA0-0.022-0.02413.143-0.005-0.0050.0000.0000.0000.000
9A144PHE00.0110.01214.738-0.043-0.0430.0000.0000.0000.000
10A145TYR00.0240.00617.8900.0290.0290.0000.0000.0000.000
11A146ILE00.0060.00721.393-0.024-0.0240.0000.0000.0000.000
12A147SER00.0230.00325.0110.0070.0070.0000.0000.0000.000
13A148VAL0-0.0030.01127.587-0.019-0.0190.0000.0000.0000.000
14A149ASN00.0030.00830.376-0.003-0.0030.0000.0000.0000.000
15A150ARG10.7910.86433.572-0.102-0.1020.0000.0000.0000.000
16A151ALA00.0730.05237.3710.0010.0010.0000.0000.0000.000
17A152ILE0-0.046-0.02540.2540.0000.0000.0000.0000.0000.000
18A153SER00.0390.00543.456-0.003-0.0030.0000.0000.0000.000
19A154ASP-1-0.864-0.95246.8380.0670.0670.0000.0000.0000.000
20A155GLU-1-0.832-0.89050.1360.0600.0600.0000.0000.0000.000
21A156GLU-1-0.730-0.82644.7710.0870.0870.0000.0000.0000.000
22A157CYS0-0.042-0.02147.1800.0070.0070.0000.0000.0000.000
23A158THR0-0.075-0.03849.652-0.002-0.0020.0000.0000.0000.000
24A159PHE0-0.0140.00150.0660.0010.0010.0000.0000.0000.000
25A160ASN00.007-0.01555.7530.0000.0000.0000.0000.0000.000
26A161ASN0-0.040-0.01958.9410.0040.0040.0000.0000.0000.000
27A162SER0-0.071-0.05060.8220.0000.0000.0000.0000.0000.000
28A163TRP0-0.014-0.02859.7530.0000.0000.0000.0000.0000.000
29A164LEU0-0.005-0.01762.705-0.001-0.0010.0000.0000.0000.000
30A165TRP0-0.021-0.01666.040-0.001-0.0010.0000.0000.0000.000
31A166LYS10.8610.95062.173-0.056-0.0560.0000.0000.0000.000
32A167ASN00.0220.00864.1310.0010.0010.0000.0000.0000.000
33A168GLU-1-0.817-0.86666.6790.0400.0400.0000.0000.0000.000
34A169LYS10.8000.89965.026-0.044-0.0440.0000.0000.0000.000
35A170GLY00.0570.04463.8400.0010.0010.0000.0000.0000.000
36A171SER0-0.017-0.01258.3020.0010.0010.0000.0000.0000.000
37A172ARG10.7660.84856.025-0.064-0.0640.0000.0000.0000.000
38A173PRO00.0950.05351.8400.0010.0010.0000.0000.0000.000
39A174PHE0-0.076-0.03552.458-0.001-0.0010.0000.0000.0000.000
40A176LYS10.8790.92947.812-0.072-0.0720.0000.0000.0000.000
41A177ASP-1-0.810-0.89043.8190.0770.0770.0000.0000.0000.000
42A178ALA00.0040.01442.7550.0050.0050.0000.0000.0000.000
43A179ASN0-0.012-0.03336.060-0.005-0.0050.0000.0000.0000.000
44A180ILE0-0.027-0.00134.3110.0050.0050.0000.0000.0000.000
45A181SER00.026-0.00132.516-0.008-0.0080.0000.0000.0000.000
46A182LEU0-0.049-0.00829.8770.0050.0050.0000.0000.0000.000
47A183ILE0-0.014-0.02323.877-0.007-0.0070.0000.0000.0000.000
48A184TYR0-0.004-0.01524.8700.0210.0210.0000.0000.0000.000
49A185ARG10.8710.92917.574-0.538-0.5380.0000.0000.0000.000
50A186VAL0-0.027-0.01319.7190.0000.0000.0000.0000.0000.000
51A187ASN0-0.025-0.01415.0520.1650.1650.0000.0000.0000.000
52A188LEU00.0360.02115.486-0.086-0.0860.0000.0000.0000.000
53A189GLU-1-0.767-0.85313.3241.1881.1880.0000.0000.0000.000
54A190ARG10.8150.87813.413-0.586-0.5860.0000.0000.0000.000
55A191SER0-0.047-0.05614.3480.1340.1340.0000.0000.0000.000
56A192LEU0-0.022-0.00514.4740.0310.0310.0000.0000.0000.000
57A193GLN00.022-0.0177.3550.3140.3140.0000.0000.0000.000
58A194TYR0-0.008-0.00910.621-0.149-0.1490.0000.0000.0000.000
59A195GLY00.0310.02112.079-0.059-0.0590.0000.0000.0000.000
60A196ILE0-0.044-0.00812.267-0.034-0.0340.0000.0000.0000.000
61A197VAL00.001-0.00715.697-0.010-0.0100.0000.0000.0000.000
62A198GLY00.0030.00019.5410.0030.0030.0000.0000.0000.000
63A199SER0-0.0020.01018.236-0.002-0.0020.0000.0000.0000.000
64A200ALA00.0190.00720.532-0.024-0.0240.0000.0000.0000.000
65A201THR0-0.057-0.01818.4290.0030.0030.0000.0000.0000.000
66A202PRO00.023-0.00220.6890.0010.0010.0000.0000.0000.000
67A203ASP-1-0.778-0.84018.4090.4340.4340.0000.0000.0000.000
68A204ALA0-0.023-0.01319.156-0.050-0.0500.0000.0000.0000.000
69A205LYS10.7760.90518.277-0.206-0.2060.0000.0000.0000.000
70A206ILE0-0.029-0.02617.483-0.048-0.0480.0000.0000.0000.000
71A207VAL00.0440.02318.4050.0400.0400.0000.0000.0000.000
72A208ARG10.7780.86715.029-0.871-0.8710.0000.0000.0000.000
73A209ILE00.0260.01720.6120.0130.0130.0000.0000.0000.000
74A210SER0-0.055-0.02221.4970.0070.0070.0000.0000.0000.000
75A211LEU00.0110.02423.862-0.008-0.0080.0000.0000.0000.000
76A212ASP-1-0.767-0.89621.6190.4590.4590.0000.0000.0000.000
77A213ASP-1-0.820-0.90424.1930.2940.2940.0000.0000.0000.000
78A214ASP-1-0.887-0.91418.7020.5460.5460.0000.0000.0000.000
79A215SER0-0.115-0.07421.520-0.001-0.0010.0000.0000.0000.000
80A216THR00.0470.02023.4640.0030.0030.0000.0000.0000.000
81A217GLY00.005-0.00126.955-0.012-0.0120.0000.0000.0000.000
82A218ALA0-0.002-0.00128.6010.0020.0020.0000.0000.0000.000
83A219GLY00.0200.02132.058-0.004-0.0040.0000.0000.0000.000
84A220ILE0-0.080-0.04133.984-0.004-0.0040.0000.0000.0000.000
85A221HIS10.7870.88037.421-0.103-0.1030.0000.0000.0000.000
86A222LEU0-0.028-0.01640.744-0.002-0.0020.0000.0000.0000.000
87A223ASN00.019-0.00644.429-0.007-0.0070.0000.0000.0000.000
88A224ASP-1-0.821-0.90744.3870.0950.0950.0000.0000.0000.000
89A225GLN0-0.048-0.02246.5310.0000.0000.0000.0000.0000.000
90A226LEU0-0.0130.00549.2370.0000.0000.0000.0000.0000.000
91A227GLY00.0310.02352.129-0.002-0.0020.0000.0000.0000.000
92A228TYR0-0.004-0.01355.8160.0010.0010.0000.0000.0000.000
93A229ARG10.9370.98358.465-0.055-0.0550.0000.0000.0000.000
94A230GLN00.0050.00961.5750.0010.0010.0000.0000.0000.000
95A231PHE0-0.008-0.01462.199-0.002-0.0020.0000.0000.0000.000
96A232GLY00.037-0.00167.2200.0010.0010.0000.0000.0000.000
97A233ALA0-0.0120.00570.4980.0000.0000.0000.0000.0000.000
98A234SER0-0.047-0.03773.036-0.001-0.0010.0000.0000.0000.000
99A235TYR00.0170.02073.151-0.001-0.0010.0000.0000.0000.000
100A236THR00.0220.00477.5530.0000.0000.0000.0000.0000.000
101A237THR00.0100.00675.4430.0000.0000.0000.0000.0000.000
102A238LEU0-0.041-0.01178.8890.0000.0000.0000.0000.0000.000
103A239ASP-1-0.777-0.88177.3890.0400.0400.0000.0000.0000.000
104A240ALA00.0260.01274.5530.0000.0000.0000.0000.0000.000
105A241TYR00.0200.01467.4030.0010.0010.0000.0000.0000.000
106A242PHE0-0.039-0.02671.345-0.001-0.0010.0000.0000.0000.000
107A243ARG10.8270.91668.697-0.043-0.0430.0000.0000.0000.000
108A244GLU-1-0.693-0.81363.3070.0540.0540.0000.0000.0000.000
109A245TRP0-0.026-0.02061.640-0.001-0.0010.0000.0000.0000.000
110A246SER00.0120.00958.6410.0020.0020.0000.0000.0000.000
111A247THR00.0080.01254.041-0.002-0.0020.0000.0000.0000.000
112A248ASP-1-0.811-0.90452.2630.0670.0670.0000.0000.0000.000
113A249ALA0-0.036-0.02449.5890.0020.0020.0000.0000.0000.000
114A250ILE0-0.0120.00146.9800.0020.0020.0000.0000.0000.000
115A251ALA00.0280.02143.073-0.002-0.0020.0000.0000.0000.000
116A252GLN0-0.0010.00145.061-0.004-0.0040.0000.0000.0000.000
117A253ASP-1-0.802-0.88842.2090.1250.1250.0000.0000.0000.000
118A254TYR00.0210.00037.936-0.005-0.0050.0000.0000.0000.000
119A255ARG10.8700.93437.636-0.127-0.1270.0000.0000.0000.000
120A256PHE00.0280.01732.496-0.003-0.0030.0000.0000.0000.000
121A257VAL0-0.019-0.02133.9630.0020.0020.0000.0000.0000.000
122A258PHE00.0440.02228.1410.0060.0060.0000.0000.0000.000
123A259ASN00.010-0.01131.369-0.011-0.0110.0000.0000.0000.000
124A260ALA00.0220.02929.1910.0030.0030.0000.0000.0000.000
125A261SER0-0.008-0.00630.670-0.008-0.0080.0000.0000.0000.000
126A262ASN00.005-0.00129.566-0.002-0.0020.0000.0000.0000.000
127A263ASN00.020-0.00630.8850.0100.0100.0000.0000.0000.000
128A264LYS10.8130.91727.217-0.157-0.1570.0000.0000.0000.000
129A265ALA0-0.0050.01426.5690.0190.0190.0000.0000.0000.000
130A266GLN0-0.008-0.01727.177-0.010-0.0100.0000.0000.0000.000
131A267ILE0-0.018-0.00627.0860.0290.0290.0000.0000.0000.000
132A268LEU0-0.070-0.02622.818-0.010-0.0100.0000.0000.0000.000
133A269LYS10.9420.96121.463-0.488-0.4880.0000.0000.0000.000
134A270THR00.004-0.00326.6250.0020.0020.0000.0000.0000.000
135A271PHE0-0.033-0.00326.6880.0000.0000.0000.0000.0000.000
136A272PRO00.1160.03728.5450.0010.0010.0000.0000.0000.000
137A273VAL00.0020.01629.1900.0020.0020.0000.0000.0000.000
138A274ASP-1-0.838-0.90231.5030.1770.1770.0000.0000.0000.000
139A275ASN0-0.032-0.02635.1900.0000.0000.0000.0000.0000.000
140A276ILE00.0170.01138.4280.0020.0020.0000.0000.0000.000
141A277ASN00.0170.01339.861-0.012-0.0120.0000.0000.0000.000
142A278GLU-1-0.791-0.89141.8730.1340.1340.0000.0000.0000.000
143A279LYS10.7730.88142.831-0.139-0.1390.0000.0000.0000.000
144A280PHE00.0190.00846.432-0.002-0.0020.0000.0000.0000.000
145A281GLU-1-0.819-0.86450.1800.0870.0870.0000.0000.0000.000
146A282ARG10.8330.86652.129-0.081-0.0810.0000.0000.0000.000
147A283LYS10.8840.93655.376-0.082-0.0820.0000.0000.0000.000
148A284GLU-1-0.822-0.88658.9120.0730.0730.0000.0000.0000.000
149A285VAL00.0090.01462.2020.0000.0000.0000.0000.0000.000
150A286SER0-0.013-0.01365.0320.0000.0000.0000.0000.0000.000
151A287GLY00.0230.01968.8260.0010.0010.0000.0000.0000.000
152A288PHE0-0.012-0.01471.7290.0000.0000.0000.0000.0000.000
153A289GLU-1-0.809-0.87075.4020.0400.0400.0000.0000.0000.000
154A290LEU0-0.0120.00677.901-0.001-0.0010.0000.0000.0000.000
155A291GLY00.0110.00781.2370.0000.0000.0000.0000.0000.000
156A292VAL0-0.029-0.02183.543-0.001-0.0010.0000.0000.0000.000
157A293THR0-0.061-0.04786.7010.0010.0010.0000.0000.0000.000
158A294GLY0-0.0020.00589.144-0.001-0.0010.0000.0000.0000.000
159A295GLY0-0.013-0.01491.9980.0000.0000.0000.0000.0000.000
160A296VAL0-0.015-0.01194.5170.0000.0000.0000.0000.0000.000
161A297GLU-1-0.816-0.86597.3740.0250.0250.0000.0000.0000.000
162A298VAL00.010-0.00699.6950.0000.0000.0000.0000.0000.000
163A299SER0-0.017-0.024102.6940.0000.0000.0000.0000.0000.000
164A300GLY0-0.025-0.025104.9890.0000.0000.0000.0000.0000.000
165A301ASP-1-0.894-0.933105.9460.0220.0220.0000.0000.0000.000
166A302GLY00.0600.033106.8230.0000.0000.0000.0000.0000.000
167A303PRO0-0.051-0.016104.3410.0000.0000.0000.0000.0000.000
168A304LYS10.7890.874100.638-0.024-0.0240.0000.0000.0000.000
169A305ALA0-0.013-0.01498.9100.0000.0000.0000.0000.0000.000
170A306LYS10.8620.93390.622-0.031-0.0310.0000.0000.0000.000
171A307LEU00.0150.00492.1110.0000.0000.0000.0000.0000.000
172A308GLU-1-0.801-0.86487.4550.0330.0330.0000.0000.0000.000
173A309ALA00.016-0.00387.7630.0000.0000.0000.0000.0000.000
174A310ARG10.8190.89782.171-0.037-0.0370.0000.0000.0000.000
175A311ALA00.032-0.00581.6650.0000.0000.0000.0000.0000.000
176A312SER0-0.0120.00377.8880.0000.0000.0000.0000.0000.000
177A313TYR0-0.005-0.02471.4320.0000.0000.0000.0000.0000.000
178A314THR0-0.042-0.02670.4230.0000.0000.0000.0000.0000.000
179A315GLN00.0440.02568.240-0.001-0.0010.0000.0000.0000.000
180A316SER0-0.026-0.00365.4230.0000.0000.0000.0000.0000.000
181A317ARG10.9600.96758.543-0.073-0.0730.0000.0000.0000.000
182A318TRP0-0.0060.00658.5450.0000.0000.0000.0000.0000.000
183A319LEU0-0.052-0.03854.0070.0010.0010.0000.0000.0000.000
184A320THR0-0.013-0.01251.731-0.002-0.0020.0000.0000.0000.000
185A321TYR0-0.023-0.01249.2240.0010.0010.0000.0000.0000.000
186A322ASN0-0.023-0.01245.183-0.004-0.0040.0000.0000.0000.000
187A323THR0-0.058-0.04446.4500.0000.0000.0000.0000.0000.000
188A324GLN00.0410.01639.0190.0040.0040.0000.0000.0000.000
189A325ASP-1-0.752-0.83943.4400.1120.1120.0000.0000.0000.000
190A326TYR0-0.013-0.03840.825-0.003-0.0030.0000.0000.0000.000
191A327ARG10.8390.91541.024-0.119-0.1190.0000.0000.0000.000
192A328ILE00.0060.00634.8760.0000.0000.0000.0000.0000.000
193A329GLU-1-0.833-0.88038.4980.1280.1280.0000.0000.0000.000
194A330ARG10.8440.90231.318-0.220-0.2200.0000.0000.0000.000
195A331ASN0-0.028-0.01937.091-0.007-0.0070.0000.0000.0000.000
196A332ALA00.0370.01135.7390.0060.0060.0000.0000.0000.000
197A333LYS10.9130.97136.725-0.161-0.1610.0000.0000.0000.000
198A334ASN00.0300.00936.072-0.003-0.0030.0000.0000.0000.000
199A335ALA00.0390.02132.8470.0090.0090.0000.0000.0000.000
200A336GLN00.0440.03031.5350.0200.0200.0000.0000.0000.000
201A337ALA0-0.029-0.00231.9310.0080.0080.0000.0000.0000.000
202A338VAL0-0.0150.00131.056-0.007-0.0070.0000.0000.0000.000
203A339SER0-0.007-0.00433.914-0.002-0.0020.0000.0000.0000.000
204A340PHE00.0090.01030.285-0.004-0.0040.0000.0000.0000.000
205A341THR0-0.020-0.01235.498-0.008-0.0080.0000.0000.0000.000
206A342TRP00.0520.03632.3650.0010.0010.0000.0000.0000.000
207A343ASN0-0.022-0.04739.395-0.009-0.0090.0000.0000.0000.000
208A344ARG10.8230.91743.167-0.105-0.1050.0000.0000.0000.000
209A345GLN00.0010.00245.7660.0020.0020.0000.0000.0000.000
210A346GLN00.0070.01447.440-0.004-0.0040.0000.0000.0000.000
211A347TYR00.011-0.01449.0450.0000.0000.0000.0000.0000.000
212A348ALA00.0220.03049.6830.0000.0000.0000.0000.0000.000
213A349THR0-0.0090.00350.710-0.002-0.0020.0000.0000.0000.000
214A350ALA00.0870.05054.1390.0000.0000.0000.0000.0000.000
215A351GLU-1-0.783-0.86556.6950.0600.0600.0000.0000.0000.000
216A352SER0-0.089-0.05554.5340.0010.0010.0000.0000.0000.000
217A353LEU00.0440.02052.3380.0010.0010.0000.0000.0000.000
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