FMO DATABASE

FMODB ID: LNJR9

Calculation Name: 1OEY-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1OEY

Chain ID: A

ChEMBL ID:

UniProt ID: P19878

Base Structure: X-ray

Registration Date: 2023-09-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

IFIE MAP

IFIE Diagram

Modeling method

Optimization	MOE:Amber10:EHT
Restraint	OptH
Protonation	MOE:Protonate 3D
Complement	MOE:Structure Preparation
Water	No
Procedure	Auto-FMO protocol ver. 2.20220422

FMO calculation

FMO method	FMO2-MP2/6-31G(d)
Fragmentation	Auto
Number of fragment	82
LigandCharge
Software	ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)

Total energy (hartree)

FMO2-HF: Electronic energy	-580509.910588
FMO2-HF: Nuclear repulsion	545848.841052
FMO2-HF: Total energy	-34661.069536
FMO2-MP2: Total energy	-34758.882759

3D Structure

Snapshot

Ligand structure

Ligand Interaction

Ligand binding energy

IFIE [kcal/mol]	PIEDA [kcal/mol]				Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level.	ESElectro static interaction energy.	EXExchange-repulsion energy.	CT+mixCharge transfer and mixing terms energy.	DI(MP2)Dispersion energy.	q(I=>J)Charge transfer value from I to J fragments.
N/A	N/A	N/A	N/A	N/A	N/A

Interactive mode: IFIE and PIEDA for fragment #1(A:347:GLY)

Summations of interaction energy for fragment #1(A:347:GLY)

IFIE [kcal/mol]	PIEDA [kcal/mol]				Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level.	ESElectro static interaction energy.	EXExchange-repulsion energy.	CT+mixCharge transfer and mixing terms energy.	DI(MP2)Dispersion energy.	q(I=>J)Charge transfer value from I to J fragments.
0.029	1.777	-0.012	-0.992	-0.745	0.004

Interaction energy analysis for fragmet #1(A:347:GLY)

Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE

Single fragment	Multi fragments
	Fragment list

Charge [e] FCHARGE : 0 / q_Mulliken : 0.053 / q_NPA : 0.027

Distance from base fragment(s) [Å]

Dist

Interaction energy by IFIE and PIEDA
[kcal/mol]

| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >

Fragment charge [e]

FCHARGE q_Mulliken
q_NPA q(I=>J)

Residue

Res # RES

Sort

Graph Options

X Axis Label
Y Axis Max Y Axis Min
Display ES EX CT+mix DI(MP2)

frag_NumFragment number.	ChainChain species.	Res #Residue number.	RES3-letter code of amino acid residue, ligand and solvent molecule.	FCHARGEFormal charge [e].	q_MullikenFragment charge evaluated by Mulliken charge [e].	q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e].	DISTDistance from Ligand [Å].	TotalIFIE at MP2 level [kcal/mol].	ESElectro static interaction energy by PIEDA [kcal/mol].	EXExchange-repulsion energy by PIEDA [kcal/mol].	CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol].	DI(MP2)Dispersion energy by PIEDA [kcal/mol].	q(I=>J)Charge transfer value from I to J fragmens [e].
3	A	349	HIS	0	0.062	0.025	3.817	-0.794	0.954	-0.012	-0.992	-0.745	0.004
4	A	350	MET	0	-0.024	0.009	6.751	0.728	0.728	0.000	0.000	0.000	0.000
5	A	351	ALA	0	-0.006	-0.004	7.818	0.031	0.031	0.000	0.000	0.000	0.000
6	A	352	TYR	0	0.032	0.009	7.463	0.012	0.012	0.000	0.000	0.000	0.000
7	A	353	THR	0	-0.068	-0.041	11.216	0.073	0.073	0.000	0.000	0.000	0.000
8	A	354	LEU	0	0.048	0.030	14.434	0.007	0.007	0.000	0.000	0.000	0.000
9	A	355	LYS	1	0.927	0.960	16.573	0.078	0.078	0.000	0.000	0.000	0.000
10	A	356	VAL	0	0.021	0.015	20.138	0.012	0.012	0.000	0.000	0.000	0.000
11	A	357	HIS	1	0.822	0.894	22.729	0.011	0.011	0.000	0.000	0.000	0.000
12	A	358	TYR	0	0.103	0.058	26.344	0.007	0.007	0.000	0.000	0.000	0.000
13	A	359	LYS	1	0.967	0.987	28.631	-0.033	-0.033	0.000	0.000	0.000	0.000
14	A	360	TYR	0	0.039	0.034	27.660	-0.007	-0.007	0.000	0.000	0.000	0.000
15	A	361	THR	0	-0.019	-0.011	24.950	0.006	0.006	0.000	0.000	0.000	0.000
16	A	362	VAL	0	0.029	0.030	22.313	-0.007	-0.007	0.000	0.000	0.000	0.000
17	A	363	VAL	0	0.004	-0.014	18.656	-0.001	-0.001	0.000	0.000	0.000	0.000
18	A	364	MET	0	-0.049	-0.004	16.581	0.004	0.004	0.000	0.000	0.000	0.000
19	A	365	LYS	1	0.994	0.987	12.927	0.169	0.169	0.000	0.000	0.000	0.000
20	A	366	THR	0	0.004	-0.001	11.133	0.076	0.076	0.000	0.000	0.000	0.000
21	A	367	GLN	0	0.019	0.011	6.929	-0.204	-0.204	0.000	0.000	0.000	0.000
22	A	368	PRO	0	-0.015	-0.007	5.417	0.041	0.041	0.000	0.000	0.000	0.000
23	A	369	GLY	0	0.042	0.011	6.911	0.421	0.421	0.000	0.000	0.000	0.000
24	A	370	LEU	0	-0.045	-0.001	9.381	0.104	0.104	0.000	0.000	0.000	0.000
25	A	371	PRO	0	0.060	0.034	11.291	-0.118	-0.118	0.000	0.000	0.000	0.000
26	A	372	TYR	0	0.103	0.041	14.534	-0.043	-0.043	0.000	0.000	0.000	0.000
27	A	373	SER	0	0.002	0.006	17.884	-0.049	-0.049	0.000	0.000	0.000	0.000
28	A	374	GLN	0	0.035	0.009	14.359	0.005	0.005	0.000	0.000	0.000	0.000
29	A	375	VAL	0	0.012	0.012	14.791	-0.045	-0.045	0.000	0.000	0.000	0.000
30	A	376	ARG	1	0.948	0.966	16.955	-0.256	-0.256	0.000	0.000	0.000	0.000
31	A	377	ASP	-1	-0.822	-0.891	19.201	0.221	0.221	0.000	0.000	0.000	0.000
32	A	378	MET	0	-0.015	0.000	13.663	-0.041	-0.041	0.000	0.000	0.000	0.000
33	A	379	VAL	0	-0.023	-0.019	19.229	-0.037	-0.037	0.000	0.000	0.000	0.000
34	A	380	SER	0	-0.057	-0.043	21.528	-0.017	-0.017	0.000	0.000	0.000	0.000
35	A	381	LYS	1	0.879	0.914	20.883	-0.239	-0.239	0.000	0.000	0.000	0.000
36	A	382	LYS	1	0.905	0.959	21.431	-0.034	-0.034	0.000	0.000	0.000	0.000
37	A	383	LEU	0	-0.055	-0.041	23.615	-0.015	-0.015	0.000	0.000	0.000	0.000
38	A	384	GLU	-1	-0.938	-0.951	26.674	0.046	0.046	0.000	0.000	0.000	0.000
39	A	385	LEU	0	-0.028	0.001	27.535	-0.005	-0.005	0.000	0.000	0.000	0.000
40	A	386	ARG	1	0.969	1.001	27.942	-0.086	-0.086	0.000	0.000	0.000	0.000
41	A	387	LEU	0	0.098	0.048	23.471	-0.003	-0.003	0.000	0.000	0.000	0.000
42	A	388	GLU	-1	-0.883	-0.954	27.221	0.139	0.139	0.000	0.000	0.000	0.000
43	A	389	HIS	0	-0.138	-0.078	29.873	-0.010	-0.010	0.000	0.000	0.000	0.000
44	A	390	THR	0	-0.014	0.008	24.215	-0.012	-0.012	0.000	0.000	0.000	0.000
45	A	391	LYS	1	0.961	0.985	26.283	-0.079	-0.079	0.000	0.000	0.000	0.000
46	A	392	LEU	0	0.010	0.001	21.177	-0.012	-0.012	0.000	0.000	0.000	0.000
47	A	393	SER	0	0.025	0.012	24.695	0.009	0.009	0.000	0.000	0.000	0.000
48	A	394	TYR	0	-0.071	-0.069	20.916	-0.001	-0.001	0.000	0.000	0.000	0.000
49	A	395	ARG	1	0.952	0.985	22.746	0.016	0.016	0.000	0.000	0.000	0.000
50	A	396	PRO	0	0.037	0.021	22.255	-0.007	-0.007	0.000	0.000	0.000	0.000
51	A	397	ARG	1	0.958	0.973	19.291	0.064	0.064	0.000	0.000	0.000	0.000
52	A	398	ASP	-1	-0.931	-0.958	23.134	-0.040	-0.040	0.000	0.000	0.000	0.000
53	A	399	SER	0	0.008	0.025	26.299	0.002	0.002	0.000	0.000	0.000	0.000
54	A	400	ASN	0	-0.025	-0.033	27.939	-0.012	-0.012	0.000	0.000	0.000	0.000
55	A	401	GLU	-1	-0.903	-0.946	30.244	0.018	0.018	0.000	0.000	0.000	0.000
56	A	402	LEU	0	-0.095	-0.055	25.906	0.002	0.002	0.000	0.000	0.000	0.000
57	A	403	VAL	0	0.034	0.021	24.259	0.000	0.000	0.000	0.000	0.000	0.000
58	A	404	PRO	0	0.032	0.011	25.339	0.003	0.003	0.000	0.000	0.000	0.000
59	A	405	LEU	0	-0.018	-0.015	18.745	0.011	0.011	0.000	0.000	0.000	0.000
60	A	406	SER	0	-0.011	-0.006	21.475	-0.001	-0.001	0.000	0.000	0.000	0.000
61	A	407	GLU	-1	-0.930	-0.995	19.573	0.332	0.332	0.000	0.000	0.000	0.000
62	A	408	ASP	-1	-0.878	-0.926	19.092	0.283	0.283	0.000	0.000	0.000	0.000
63	A	409	SER	0	-0.051	-0.021	20.305	0.010	0.010	0.000	0.000	0.000	0.000
64	A	410	MET	0	-0.023	-0.005	15.098	-0.021	-0.021	0.000	0.000	0.000	0.000
65	A	411	LYS	1	0.961	0.956	12.380	-0.662	-0.662	0.000	0.000	0.000	0.000
66	A	412	ASP	-1	-0.807	-0.867	14.994	0.084	0.084	0.000	0.000	0.000	0.000
67	A	413	ALA	0	0.003	0.005	17.112	-0.037	-0.037	0.000	0.000	0.000	0.000
68	A	414	TRP	0	-0.043	-0.040	11.729	-0.075	-0.075	0.000	0.000	0.000	0.000
69	A	415	GLY	0	0.006	0.009	13.319	-0.061	-0.061	0.000	0.000	0.000	0.000
70	A	416	GLN	0	-0.061	-0.031	15.006	-0.065	-0.065	0.000	0.000	0.000	0.000
71	A	417	VAL	0	-0.074	-0.021	12.153	-0.024	-0.024	0.000	0.000	0.000	0.000
72	A	418	LYS	1	0.980	0.978	15.226	0.124	0.124	0.000	0.000	0.000	0.000
73	A	419	ASN	0	-0.025	-0.023	16.219	-0.046	-0.046	0.000	0.000	0.000	0.000
74	A	420	TYR	0	0.020	0.019	10.611	-0.033	-0.033	0.000	0.000	0.000	0.000
75	A	421	CYS	0	-0.024	-0.004	13.513	0.044	0.044	0.000	0.000	0.000	0.000
76	A	422	LEU	0	0.062	0.048	14.835	0.001	0.001	0.000	0.000	0.000	0.000
77	A	423	THR	0	-0.055	-0.040	16.577	0.000	0.000	0.000	0.000	0.000	0.000
78	A	424	LEU	0	0.015	0.014	18.638	0.013	0.013	0.000	0.000	0.000	0.000
79	A	425	TRP	0	-0.011	-0.011	21.984	-0.021	-0.021	0.000	0.000	0.000	0.000
80	A	426	CYS	0	-0.053	-0.027	25.536	0.019	0.019	0.000	0.000	0.000	0.000
81	A	427	GLU	-1	-0.885	-0.944	27.001	0.059	0.059	0.000	0.000	0.000	0.000
82	A	428	ASN	0	-0.010	-0.008	30.518	-0.003	-0.003	0.000	0.000	0.000	0.000

Top

Graph

Manual

About

Interactive mode: IFIE and PIEDA for fragment #1(A:347:GLY)