FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-07-23

All entries: 44592

Number of unique PDB entries: 7794

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FMODB ID: LQMG9

Calculation Name: 4OWT-C-Xray540

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4OWT

Chain ID: C

ChEMBL ID:

UniProt ID: Q68E01

Base Structure: X-ray

Registration Date: 2025-07-11

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 74
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -147846.834911
FMO2-HF: Nuclear repulsion 133467.451566
FMO2-HF: Total energy -14379.383345
FMO2-MP2: Total energy -14422.591694


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(C:63:HIS)


Summations of interaction energy for fragment #1(C:63:HIS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
2.172-28.62230.0299.716-8.9490.014
Interaction energy analysis for fragmet #1(C:63:HIS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.091 / q_NPA : 0.040
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4C64ILE0-0.0280.1473.417-1.532-0.3010.062-0.716-0.5770.003
5C65ALA00.137-0.1162.65116.3152.6610.39214.594-1.331-0.006
6C65ALA0-0.0360.1355.202-0.593-0.5930.0000.0000.0000.000
7C66ALA00.100-0.1272.4685.8600.0860.7265.998-0.950-0.001
8C66ALA0-0.0880.1181.7410.770-3.0539.084-4.271-0.9890.002
9C67GLN00.044-0.1262.094-8.600-13.5809.294-1.874-2.4400.017
10C67GLN0-0.0650.0901.703-0.993-5.03310.403-3.902-2.462-0.004
11C68GLN00.087-0.1023.676-3.834-3.5880.068-0.113-0.2000.003
12C68GLN0-0.0750.1096.114-1.002-1.0020.0000.0000.0000.000
13C69LYS00.122-0.0586.149-1.239-1.2390.0000.0000.0000.000
14C69LYS10.8411.0606.342-1.229-1.2290.0000.0000.0000.000
15C70ALA00.086-0.1116.576-0.807-0.8070.0000.0000.0000.000
16C70ALA0-0.0720.1116.607-0.069-0.0690.0000.0000.0000.000
17C71ALA00.087-0.1107.821-0.680-0.6800.0000.0000.0000.000
18C71ALA0-0.0730.1168.7290.0640.0640.0000.0000.0000.000
19C72LEU00.130-0.1149.809-0.402-0.4020.0000.0000.0000.000
20C72LEU0-0.1120.11111.4660.0420.0420.0000.0000.0000.000
21C73GLN00.079-0.08811.265-0.243-0.2430.0000.0000.0000.000
22C73GLN0-0.1370.06911.599-0.024-0.0240.0000.0000.0000.000
23C74HIS00.088-0.08312.273-0.203-0.2030.0000.0000.0000.000
24C74HIS0-0.0870.08112.4520.0070.0070.0000.0000.0000.000
25C75ALA00.070-0.11414.071-0.154-0.1540.0000.0000.0000.000
26C75ALA0-0.0710.10515.1260.0210.0210.0000.0000.0000.000
27C76HIS00.056-0.08915.837-0.093-0.0930.0000.0000.0000.000
28C76HIS0-0.1190.06716.169-0.008-0.0080.0000.0000.0000.000
29C77ALA00.122-0.07216.949-0.068-0.0680.0000.0000.0000.000
30C77ALA0-0.1000.07917.253-0.004-0.0040.0000.0000.0000.000
31C78HIS0-0.021-0.10318.616-0.065-0.0650.0000.0000.0000.000
32C78HIS0-0.1080.07817.143-0.025-0.0250.0000.0000.0000.000
33C79SER00.114-0.04620.076-0.050-0.0500.0000.0000.0000.000
34C79SER0-0.0620.05719.620-0.007-0.0070.0000.0000.0000.000
35C80SER00.070-0.06221.4270.0300.0300.0000.0000.0000.000
36C80SER0-0.0610.06525.386-0.001-0.0010.0000.0000.0000.000
37C81GLY0-0.048-0.10522.266-0.022-0.0220.0000.0000.0000.000
38C82TYR00.1800.01020.9950.0390.0390.0000.0000.0000.000
39C82TYR0-0.1090.10920.5950.0030.0030.0000.0000.0000.000
40C83PHE00.036-0.11216.903-0.043-0.0430.0000.0000.0000.000
41C83PHE0-0.0570.09515.9990.0220.0220.0000.0000.0000.000
42C84ILE00.042-0.09415.521-0.019-0.0190.0000.0000.0000.000
43C84ILE0-0.1000.08515.599-0.030-0.0300.0000.0000.0000.000
44C85THR00.050-0.07910.942-0.073-0.0730.0000.0000.0000.000
45C85THR0-0.0020.08510.034-0.062-0.0620.0000.0000.0000.000
46C86GLN00.030-0.12510.923-0.287-0.2870.0000.0000.0000.000
47C86GLN0-0.0960.09412.359-0.149-0.1490.0000.0000.0000.000
48C87ASP00.050-0.1028.1510.7800.7800.0000.0000.0000.000
49C87ASP-1-0.975-0.8458.2521.6261.6260.0000.0000.0000.000
50C88SER00.092-0.0889.058-0.286-0.2860.0000.0000.0000.000
51C88SER0-0.0520.08310.497-0.078-0.0780.0000.0000.0000.000
52C89ALA00.057-0.1108.2340.7320.7320.0000.0000.0000.000
53C89ALA0-0.0530.1259.128-0.071-0.0710.0000.0000.0000.000
54C90PHE0-0.047-0.1389.356-0.166-0.1660.0000.0000.0000.000
55C90PHE0-0.0980.10113.548-0.013-0.0130.0000.0000.0000.000
56C91GLY00.088-0.09510.700-0.155-0.1550.0000.0000.0000.000
57C92ASN00.0550.02611.846-0.064-0.0640.0000.0000.0000.000
58C92ASN0-0.1050.07413.586-0.078-0.0780.0000.0000.0000.000
59C93LEU00.131-0.0989.137-0.149-0.1490.0000.0000.0000.000
60C93LEU0-0.0830.1006.5440.1090.1090.0000.0000.0000.000
61C94ILE00.059-0.10010.2250.2400.2400.0000.0000.0000.000
62C94ILE0-0.0580.10011.545-0.005-0.0050.0000.0000.0000.000
63C95LEU00.046-0.17513.203-0.078-0.0780.0000.0000.0000.000
64C95LEU0-0.0530.15415.637-0.012-0.0120.0000.0000.0000.000
65C96PRO00.034-0.05816.7740.0100.0100.0000.0000.0000.000
66C97VAL00.0190.00019.929-0.037-0.0370.0000.0000.0000.000
67C97VAL0-0.0950.07119.381-0.002-0.0020.0000.0000.0000.000
68C98LEU00.089-0.11521.9160.0000.0000.0000.0000.0000.000
69C98LEU0-0.0460.13325.922-0.004-0.0040.0000.0000.0000.000
70C99PRO00.014-0.11623.7090.0330.0330.0000.0000.0000.000
71C100ARG00.0980.01123.350-0.037-0.0370.0000.0000.0000.000
72C100ARG10.8611.07418.850-0.701-0.7010.0000.0000.0000.000
73C101LEU0-0.084-0.13324.5840.0210.0210.0000.0000.0000.000
74C101LEU00.0750.05327.328-0.006-0.0060.0000.0000.0000.000