FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: LR2R9

Calculation Name: 1ZTP-A-Xray549

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1ZTP

Chain ID: A

ChEMBL ID:

UniProt ID: Q9H3H3

Base Structure: X-ray

Registration Date: 2025-10-11

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 234
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2667712.93577
FMO2-HF: Nuclear repulsion 2578325.220355
FMO2-HF: Total energy -89387.715415
FMO2-MP2: Total energy -89650.177048


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:17:GLU)


Summations of interaction energy for fragment #1(A:17:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
6.89611.0621.317-1.834-3.6480.001
Interaction energy analysis for fragmet #1(A:17:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.126 / q_NPA : -0.076
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A19GLY00.0460.0363.5525.8267.4790.016-0.653-1.0160.000
4A20PHE0-0.037-0.0232.1692.3074.6711.302-1.161-2.5040.001
5A21THR0-0.055-0.0314.7093.5623.711-0.001-0.020-0.1280.000
6A22ALA00.0200.0076.7670.7590.7590.0000.0000.0000.000
7A23GLU-1-0.908-0.96610.134-4.000-4.0000.0000.0000.0000.000
8A24HIS0-0.060-0.0277.702-1.067-1.0670.0000.0000.0000.000
9A25LEU0-0.010-0.0147.8301.0371.0370.0000.0000.0000.000
10A26ALA0-0.036-0.00910.9410.6170.6170.0000.0000.0000.000
11A27ALA0-0.025-0.01613.1070.3710.3710.0000.0000.0000.000
12A28GLU-1-0.898-0.94711.122-3.591-3.5910.0000.0000.0000.000
13A29ALA0-0.022-0.00613.5010.3930.3930.0000.0000.0000.000
14A30MET0-0.055-0.01616.2270.3520.3520.0000.0000.0000.000
15A31ALA00.010-0.00819.084-0.027-0.0270.0000.0000.0000.000
16A32ALA0-0.048-0.03322.2680.0250.0250.0000.0000.0000.000
17A33ASP-1-0.850-0.93925.803-0.402-0.4020.0000.0000.0000.000
18A34MET0-0.0060.01220.496-0.040-0.0400.0000.0000.0000.000
19A35ASP-1-0.793-0.84925.935-0.378-0.3780.0000.0000.0000.000
20A36PRO00.0140.00929.1940.0140.0140.0000.0000.0000.000
21A37TRP0-0.042-0.04630.435-0.009-0.0090.0000.0000.0000.000
22A38LEU00.0050.01434.0580.0380.0380.0000.0000.0000.000
23A39VAL0-0.020-0.02035.258-0.021-0.0210.0000.0000.0000.000
24A40PHE00.0170.01938.4850.0210.0210.0000.0000.0000.000
25A41ASP-1-0.741-0.85938.2980.0250.0250.0000.0000.0000.000
26A42ALA00.0440.01540.8590.0210.0210.0000.0000.0000.000
27A43ARG10.7150.83235.839-0.026-0.0260.0000.0000.0000.000
28A44THR0-0.046-0.01739.0190.0290.0290.0000.0000.0000.000
29A45THR0-0.033-0.01141.8700.0180.0180.0000.0000.0000.000
30A46PRO00.0230.01444.506-0.014-0.0140.0000.0000.0000.000
31A47ALA00.0510.01148.365-0.009-0.0090.0000.0000.0000.000
32A48THR0-0.021-0.01449.806-0.009-0.0090.0000.0000.0000.000
33A49GLU-1-0.920-0.96148.0510.0690.0690.0000.0000.0000.000
34A50LEU0-0.0130.01146.744-0.007-0.0070.0000.0000.0000.000
35A51ASP-1-0.831-0.91948.757-0.051-0.0510.0000.0000.0000.000
36A52ALA00.0040.00549.936-0.008-0.0080.0000.0000.0000.000
37A53TRP0-0.016-0.00540.888-0.010-0.0100.0000.0000.0000.000
38A54LEU0-0.028-0.02346.273-0.014-0.0140.0000.0000.0000.000
39A55ALA0-0.027-0.00948.116-0.012-0.0120.0000.0000.0000.000
40A56LYS10.8880.95643.2180.0030.0030.0000.0000.0000.000
41A57TYR00.0100.00141.824-0.003-0.0030.0000.0000.0000.000
42A58PRO00.0420.04044.764-0.013-0.0130.0000.0000.0000.000
43A59PRO00.0350.00843.653-0.008-0.0080.0000.0000.0000.000
44A60SER0-0.107-0.08244.396-0.020-0.0200.0000.0000.0000.000
45A61GLN0-0.025-0.01546.058-0.002-0.0020.0000.0000.0000.000
46A62VAL00.0290.02539.940-0.003-0.0030.0000.0000.0000.000
47A63THR0-0.014-0.00640.080-0.024-0.0240.0000.0000.0000.000
48A64ARG10.7530.84630.4450.4560.4560.0000.0000.0000.000
49A65TYR0-0.004-0.02332.151-0.013-0.0130.0000.0000.0000.000
50A66GLY00.0560.06435.9250.0040.0040.0000.0000.0000.000
51A67ASP-1-0.859-0.91237.998-0.292-0.2920.0000.0000.0000.000
52A68PRO00.014-0.00440.6390.0220.0220.0000.0000.0000.000
53A69GLY0-0.0060.00143.306-0.007-0.0070.0000.0000.0000.000
54A70SER0-0.0270.00341.620-0.003-0.0030.0000.0000.0000.000
55A71PRO0-0.050-0.01743.0920.0130.0130.0000.0000.0000.000
56A72ASN0-0.072-0.05737.3770.0290.0290.0000.0000.0000.000
57A73SER00.0360.00736.886-0.011-0.0110.0000.0000.0000.000
58A74GLU-1-0.902-0.94332.230-0.104-0.1040.0000.0000.0000.000
59A75PRO0-0.004-0.00231.419-0.004-0.0040.0000.0000.0000.000
60A76VAL0-0.020-0.00633.2460.0300.0300.0000.0000.0000.000
61A77GLY00.0170.01431.965-0.032-0.0320.0000.0000.0000.000
62A78TRP0-0.082-0.05932.541-0.008-0.0080.0000.0000.0000.000
63A79ILE00.0280.02535.5910.0310.0310.0000.0000.0000.000
64A80ALA0-0.033-0.03036.999-0.023-0.0230.0000.0000.0000.000
65A81VAL0-0.009-0.00539.1020.0240.0240.0000.0000.0000.000
66A82TYR0-0.010-0.00334.145-0.033-0.0330.0000.0000.0000.000
67A83GLY00.1030.04540.5580.0180.0180.0000.0000.0000.000
68A84GLN0-0.015-0.02642.2330.0180.0180.0000.0000.0000.000
69A85GLY00.0260.01342.547-0.012-0.0120.0000.0000.0000.000
70A86TYR0-0.024-0.00133.912-0.015-0.0150.0000.0000.0000.000
71A87SER00.009-0.00135.8460.0280.0280.0000.0000.0000.000
72A88PRO0-0.028-0.00231.056-0.028-0.0280.0000.0000.0000.000
73A89ASN00.0430.00932.5820.0370.0370.0000.0000.0000.000
74A90SER0-0.054-0.02229.711-0.053-0.0530.0000.0000.0000.000
75A91GLY00.0480.02431.8630.0360.0360.0000.0000.0000.000
76A92ASP-1-0.845-0.92427.322-0.515-0.5150.0000.0000.0000.000
77A93VAL0-0.008-0.02326.176-0.042-0.0420.0000.0000.0000.000
78A94GLN00.0170.02221.432-0.164-0.1640.0000.0000.0000.000
79A95GLY00.0220.00825.143-0.073-0.0730.0000.0000.0000.000
80A96LEU0-0.060-0.03628.076-0.028-0.0280.0000.0000.0000.000
81A97GLN0-0.030-0.03624.700-0.038-0.0380.0000.0000.0000.000
82A98ALA00.0470.03225.056-0.052-0.0520.0000.0000.0000.000
83A99ALA0-0.023-0.02026.616-0.001-0.0010.0000.0000.0000.000
84A100TRP0-0.006-0.01629.0510.0530.0530.0000.0000.0000.000
85A101GLU-1-0.918-0.95624.393-1.391-1.3910.0000.0000.0000.000
86A102ALA00.0470.03028.7990.0040.0040.0000.0000.0000.000
87A103LEU0-0.033-0.00830.5120.0500.0500.0000.0000.0000.000
88A104GLN0-0.055-0.03130.709-0.014-0.0140.0000.0000.0000.000
89A105THR00.001-0.00129.1430.0160.0160.0000.0000.0000.000
90A106SER0-0.067-0.04531.8080.0430.0430.0000.0000.0000.000
91A107GLY0-0.0170.00435.1800.0430.0430.0000.0000.0000.000
92A108ARG10.9270.96637.2710.5510.5510.0000.0000.0000.000
93A109PRO0-0.020-0.00438.973-0.018-0.0180.0000.0000.0000.000
94A110ILE00.0140.01435.4550.0160.0160.0000.0000.0000.000
95A111THR00.0100.00039.6730.0190.0190.0000.0000.0000.000
96A112PRO00.0820.03140.672-0.011-0.0110.0000.0000.0000.000
97A113GLY00.0190.02041.8470.0100.0100.0000.0000.0000.000
98A114THR00.002-0.00938.653-0.001-0.0010.0000.0000.0000.000
99A115LEU00.0100.00935.742-0.008-0.0080.0000.0000.0000.000
100A116ARG10.9470.98237.8890.2970.2970.0000.0000.0000.000
101A117GLN00.0110.00239.887-0.004-0.0040.0000.0000.0000.000
102A118LEU00.0030.01833.2390.0150.0150.0000.0000.0000.000
103A119ALA00.0190.00135.3880.0040.0040.0000.0000.0000.000
104A120ILE00.0120.00136.7640.0200.0200.0000.0000.0000.000
105A121THR0-0.056-0.03234.9980.0240.0240.0000.0000.0000.000
106A122HIS00.0070.00731.3730.0400.0400.0000.0000.0000.000
107A123HIS00.0010.00333.1820.0330.0330.0000.0000.0000.000
108A124VAL0-0.057-0.01631.3390.0140.0140.0000.0000.0000.000
109A125LEU00.003-0.01034.540-0.029-0.0290.0000.0000.0000.000
110A126SER00.0310.01935.5590.0090.0090.0000.0000.0000.000
111A127GLY00.007-0.01237.645-0.042-0.0420.0000.0000.0000.000
112A128LYS10.7580.88135.5200.4620.4620.0000.0000.0000.000
113A129TRP00.0000.00740.703-0.030-0.0300.0000.0000.0000.000
114A130LEU0-0.039-0.00939.106-0.001-0.0010.0000.0000.0000.000
115A131MET00.0140.02243.2710.0090.0090.0000.0000.0000.000
116A132HIS00.0510.02344.521-0.004-0.0040.0000.0000.0000.000
117A133LEU0-0.043-0.02346.1960.0130.0130.0000.0000.0000.000
118A134ALA00.0040.00946.780-0.017-0.0170.0000.0000.0000.000
119A135PRO00.0320.02746.2870.0160.0160.0000.0000.0000.000
120A136GLY00.0360.00748.2660.0040.0040.0000.0000.0000.000
121A137PHE00.0410.01951.120-0.004-0.0040.0000.0000.0000.000
122A138LYS10.9540.96353.1670.1790.1790.0000.0000.0000.000
123A139LEU00.0150.02545.2210.0010.0010.0000.0000.0000.000
124A140ASP-1-0.747-0.84648.606-0.158-0.1580.0000.0000.0000.000
125A141HIS0-0.014-0.00149.9410.0120.0120.0000.0000.0000.000
126A142ALA00.000-0.00549.8080.0060.0060.0000.0000.0000.000
127A143TRP00.0150.00741.816-0.003-0.0030.0000.0000.0000.000
128A144ALA00.0230.00747.8570.0080.0080.0000.0000.0000.000
129A145GLY0-0.019-0.01350.2200.0120.0120.0000.0000.0000.000
130A146ILE0-0.002-0.01245.9390.0060.0060.0000.0000.0000.000
131A147ALA00.0100.00946.0930.0060.0060.0000.0000.0000.000
132A148ARG10.8920.92547.0750.0770.0770.0000.0000.0000.000
133A149ALA0-0.0020.00149.5870.0100.0100.0000.0000.0000.000
134A150VAL0-0.043-0.01643.2260.0040.0040.0000.0000.0000.000
135A151VAL0-0.030-0.01046.1370.0130.0130.0000.0000.0000.000
136A152GLU-1-0.881-0.92647.798-0.042-0.0420.0000.0000.0000.000
137A153GLY0-0.0190.00447.4540.0050.0050.0000.0000.0000.000
138A154ARG10.8140.88748.5430.0700.0700.0000.0000.0000.000
139A155LEU0-0.025-0.00945.605-0.018-0.0180.0000.0000.0000.000
140A156GLN00.006-0.00540.945-0.003-0.0030.0000.0000.0000.000
141A157VAL00.007-0.00637.5770.0120.0120.0000.0000.0000.000
142A158ALA0-0.0040.00941.000-0.018-0.0180.0000.0000.0000.000
143A159LYS10.8870.95033.5420.3090.3090.0000.0000.0000.000
144A160VAL00.0010.00539.945-0.008-0.0080.0000.0000.0000.000
145A161SER00.0230.02538.150-0.003-0.0030.0000.0000.0000.000
146A162PRO00.0150.02236.7460.0150.0150.0000.0000.0000.000
147A163ARG10.8880.93939.6890.2050.2050.0000.0000.0000.000
148A164ALA00.0210.01639.697-0.006-0.0060.0000.0000.0000.000
149A165LYS10.8690.92837.2890.3820.3820.0000.0000.0000.000
150A166GLU-1-0.901-0.95540.804-0.383-0.3830.0000.0000.0000.000
151A167GLY0-0.021-0.01144.183-0.006-0.0060.0000.0000.0000.000
152A168GLY00.0160.01243.4970.0040.0040.0000.0000.0000.000
153A169ARG10.8250.88443.3430.3140.3140.0000.0000.0000.000
154A170GLN0-0.039-0.02741.818-0.018-0.0180.0000.0000.0000.000
155A171VAL0-0.008-0.01639.1180.0110.0110.0000.0000.0000.000
156A172ILE00.0240.00441.8520.0100.0100.0000.0000.0000.000
157A173CYS0-0.054-0.02937.967-0.018-0.0180.0000.0000.0000.000
158A174VAL00.0370.01141.3430.0210.0210.0000.0000.0000.000
159A175TYR0-0.003-0.01335.180-0.016-0.0160.0000.0000.0000.000
160A176THR0-0.0150.00640.9980.0160.0160.0000.0000.0000.000
161A177ASP-1-0.791-0.89639.307-0.175-0.1750.0000.0000.0000.000
162A178ASP-1-0.773-0.85439.685-0.243-0.2430.0000.0000.0000.000
163A179PHE0-0.048-0.02138.4400.0010.0010.0000.0000.0000.000
164A180THR0-0.137-0.10342.237-0.006-0.0060.0000.0000.0000.000
165A181ASP-1-0.782-0.88644.952-0.157-0.1570.0000.0000.0000.000
166A182ARG10.8350.88247.4970.1730.1730.0000.0000.0000.000
167A183LEU0-0.037-0.01150.225-0.001-0.0010.0000.0000.0000.000
168A184GLY00.1220.05647.6790.0010.0010.0000.0000.0000.000
169A185VAL0-0.041-0.01545.569-0.003-0.0030.0000.0000.0000.000
170A186LEU00.0170.00148.044-0.004-0.0040.0000.0000.0000.000
171A187GLU-1-0.907-0.94250.623-0.110-0.1100.0000.0000.0000.000
172A188ALA00.0290.00747.0090.0060.0060.0000.0000.0000.000
173A189ASP-1-0.834-0.88349.044-0.197-0.1970.0000.0000.0000.000
174A190SER0-0.005-0.02251.2140.0060.0060.0000.0000.0000.000
175A191ALA0-0.0050.00150.2430.0080.0080.0000.0000.0000.000
176A192ILE0-0.011-0.00447.0350.0040.0040.0000.0000.0000.000
177A193ARG10.7430.82751.2590.2050.2050.0000.0000.0000.000
178A194ALA0-0.016-0.00354.8930.0040.0040.0000.0000.0000.000
179A195ALA0-0.0220.00852.3050.0080.0080.0000.0000.0000.000
180A196GLY0-0.019-0.00954.3030.0000.0000.0000.0000.0000.000
181A197ILE0-0.056-0.02050.291-0.006-0.0060.0000.0000.0000.000
182A198LYS10.8910.94553.6710.1490.1490.0000.0000.0000.000
183A199CYS0-0.066-0.01350.227-0.001-0.0010.0000.0000.0000.000
184A200LEU00.0270.01849.1200.0070.0070.0000.0000.0000.000
185A201LEU00.0020.01447.831-0.007-0.0070.0000.0000.0000.000
186A202THR0-0.050-0.03444.545-0.009-0.0090.0000.0000.0000.000
187A203TYR00.0790.01741.412-0.017-0.0170.0000.0000.0000.000
188A204LYS10.8360.91435.9900.5280.5280.0000.0000.0000.000
189A205PRO00.0410.02938.0890.0060.0060.0000.0000.0000.000
190A206ASP-1-0.779-0.86633.478-0.430-0.4300.0000.0000.0000.000
191A207VAL00.0290.03333.124-0.053-0.0530.0000.0000.0000.000
192A208TYR0-0.013-0.02333.313-0.050-0.0500.0000.0000.0000.000
193A209THR0-0.047-0.02530.998-0.026-0.0260.0000.0000.0000.000
194A210TYR00.0350.00327.636-0.070-0.0700.0000.0000.0000.000
195A211LEU00.0050.01728.451-0.078-0.0780.0000.0000.0000.000
196A212GLY00.0170.02330.488-0.036-0.0360.0000.0000.0000.000
197A213ILE0-0.0210.01431.1000.0010.0010.0000.0000.0000.000
198A214TYR0-0.031-0.02429.3840.0500.0500.0000.0000.0000.000
199A215ARG10.9880.97735.1370.6550.6550.0000.0000.0000.000
200A216ALA00.0110.01236.7760.0240.0240.0000.0000.0000.000
201A217ASN00.0200.01336.491-0.053-0.0530.0000.0000.0000.000
202A218ARG10.9991.00531.2121.0351.0350.0000.0000.0000.000
203A219TRP00.004-0.00131.2550.0160.0160.0000.0000.0000.000
204A220HIS0-0.072-0.03438.1560.0490.0490.0000.0000.0000.000
205A221LEU0-0.0070.00338.4490.0380.0380.0000.0000.0000.000
206A222CYS-1-0.747-0.81540.704-0.444-0.4440.0000.0000.0000.000
207A223PRO0-0.037-0.02739.112-0.003-0.0030.0000.0000.0000.000
208A224THR0-0.019-0.02240.101-0.008-0.0080.0000.0000.0000.000
209A225LEU0-0.0070.01542.554-0.003-0.0030.0000.0000.0000.000
210A226TYR00.013-0.00444.6540.0120.0120.0000.0000.0000.000
211A227GLU-1-0.812-0.88346.913-0.317-0.3170.0000.0000.0000.000
212A228SER0-0.022-0.02749.4440.0140.0140.0000.0000.0000.000
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