FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: LZG19

Calculation Name: 3MUQ-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3MUQ

Chain ID: A

ChEMBL ID:

UniProt ID: Q87PK2

Base Structure: X-ray

Registration Date: 2023-06-22

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 233
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2810017.665481
FMO2-HF: Nuclear repulsion 2718637.628856
FMO2-HF: Total energy -91380.036625
FMO2-MP2: Total energy -91646.62024


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:27:GLU)


Summations of interaction energy for fragment #1(A:27:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-27.113-26.48321.298-10.531-11.3950.098
Interaction energy analysis for fragmet #1(A:27:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.849 / q_NPA : -0.929
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A29VAL0-0.0050.0103.7745.1087.100-0.031-0.724-1.2370.002
4A30ARG10.8490.9096.715-41.649-41.6490.0000.0000.0000.000
5A31LEU00.0200.0069.768-0.822-0.8220.0000.0000.0000.000
6A32ALA00.0080.02113.062-1.165-1.1650.0000.0000.0000.000
7A33THR0-0.009-0.03416.371-0.490-0.4900.0000.0000.0000.000
8A34THR00.011-0.00719.254-0.227-0.2270.0000.0000.0000.000
9A35THR00.0170.00422.3270.2070.2070.0000.0000.0000.000
10A36SER00.0020.00024.300-0.066-0.0660.0000.0000.0000.000
11A37THR00.0130.00020.370-0.323-0.3230.0000.0000.0000.000
12A38TYR0-0.0110.01117.810-0.101-0.1010.0000.0000.0000.000
13A39HIS00.0410.01221.1620.1670.1670.0000.0000.0000.000
14A40SER0-0.103-0.06322.944-0.308-0.3080.0000.0000.0000.000
15A41GLY00.1020.05221.665-0.438-0.4380.0000.0000.0000.000
16A42LEU0-0.044-0.01719.5100.3930.3930.0000.0000.0000.000
17A43LEU00.007-0.02515.2350.3820.3820.0000.0000.0000.000
18A44ASP-1-0.868-0.92615.91616.28816.2880.0000.0000.0000.000
19A45TYR0-0.030-0.01217.579-0.035-0.0350.0000.0000.0000.000
20A46LEU0-0.052-0.02915.5620.1910.1910.0000.0000.0000.000
21A47LEU0-0.003-0.00511.0970.6330.6330.0000.0000.0000.000
22A48PRO00.0570.03711.2321.3421.3420.0000.0000.0000.000
23A49GLN0-0.020-0.01712.191-0.080-0.0800.0000.0000.0000.000
24A50PHE00.0370.0187.3800.4600.4600.0000.0000.0000.000
25A51GLU-1-0.776-0.8636.47127.75927.7590.0000.0000.0000.000
26A52LYS10.8970.9528.268-16.904-16.9040.0000.0000.0000.000
27A53ASP-1-0.820-0.86710.95418.17518.1750.0000.0000.0000.000
28A54THR0-0.058-0.0447.1311.1471.1470.0000.0000.0000.000
29A55GLY0-0.0090.0105.5111.9711.9710.0000.0000.0000.000
30A56TYR0-0.068-0.0222.402-12.615-8.5464.199-3.229-5.0390.022
31A57LYS10.8270.9013.498-35.589-34.9000.003-0.200-0.4910.000
32A58VAL0-0.017-0.0185.2383.7733.728-0.001-0.0100.0560.000
33A59ASP-1-0.887-0.9278.49730.40530.4050.0000.0000.0000.000
34A60VAL0-0.010-0.02210.629-0.033-0.0330.0000.0000.0000.000
35A61ILE0-0.016-0.00312.798-0.938-0.9380.0000.0000.0000.000
36A62ALA0-0.004-0.00116.631-0.247-0.2470.0000.0000.0000.000
37A63ALA0-0.017-0.01320.047-0.536-0.5360.0000.0000.0000.000
38A64GLY00.0390.02122.908-0.209-0.2090.0000.0000.0000.000
39A65THR00.0550.00723.9730.5550.5550.0000.0000.0000.000
40A66GLY00.0270.02024.0640.3930.3930.0000.0000.0000.000
41A67LYS10.9230.96421.566-13.418-13.4180.0000.0000.0000.000
42A68ALA00.0590.02519.8950.5760.5760.0000.0000.0000.000
43A69LEU00.0220.00619.3950.7350.7350.0000.0000.0000.000
44A70LYS10.8250.92120.635-13.095-13.0950.0000.0000.0000.000
45A71MET00.0060.00416.9800.0860.0860.0000.0000.0000.000
46A72GLY00.0200.02116.2071.2571.2570.0000.0000.0000.000
47A73GLU-1-0.849-0.91417.23913.79213.7920.0000.0000.0000.000
48A74ASN0-0.053-0.02518.907-0.810-0.8100.0000.0000.0000.000
49A75GLY00.0250.03314.9020.1040.1040.0000.0000.0000.000
50A76ASP-1-0.856-0.93313.54820.13220.1320.0000.0000.0000.000
51A77VAL0-0.088-0.04411.5081.7031.7030.0000.0000.0000.000
52A78ASP-1-0.725-0.8467.50842.66642.6660.0000.0000.0000.000
53A79LEU0-0.047-0.01810.244-1.166-1.1660.0000.0000.0000.000
54A80VAL0-0.0160.00112.995-0.190-0.1900.0000.0000.0000.000
55A81MET00.0270.01415.852-0.514-0.5140.0000.0000.0000.000
56A82THR0-0.064-0.04018.703-0.247-0.2470.0000.0000.0000.000
57A83HIS00.0600.03422.4070.2630.2630.0000.0000.0000.000
58A84ALA0-0.039-0.03125.747-0.609-0.6090.0000.0000.0000.000
59A85PRO00.0400.01727.0570.1730.1730.0000.0000.0000.000
60A86LYS10.9180.96428.301-9.324-9.3240.0000.0000.0000.000
61A87ALA00.0300.01126.9620.0420.0420.0000.0000.0000.000
62A88GLU-1-0.733-0.84422.93313.48013.4800.0000.0000.0000.000
63A89GLY00.0150.01324.5660.3490.3490.0000.0000.0000.000
64A90THR00.0080.00326.921-0.085-0.0850.0000.0000.0000.000
65A91PHE0-0.024-0.01218.0180.0120.0120.0000.0000.0000.000
66A92VAL0-0.007-0.01921.4220.4380.4380.0000.0000.0000.000
67A93GLU-1-0.931-0.94323.36111.00711.0070.0000.0000.0000.000
68A94LYS10.8740.93925.170-11.744-11.7440.0000.0000.0000.000
69A95GLY00.0490.03322.4620.1100.1100.0000.0000.0000.000
70A96TYR0-0.113-0.08820.1100.5630.5630.0000.0000.0000.000
71A97GLY00.0200.01617.6011.2241.2240.0000.0000.0000.000
72A98VAL0-0.003-0.01415.840-0.969-0.9690.0000.0000.0000.000
73A99LEU0-0.033-0.02815.1080.7080.7080.0000.0000.0000.000
74A100PRO00.0060.02217.9600.5990.5990.0000.0000.0000.000
75A101ARG10.8520.90015.096-19.271-19.2710.0000.0000.0000.000
76A102LYS10.8770.94820.858-11.938-11.9380.0000.0000.0000.000
77A103LEU00.0170.01417.8630.0410.0410.0000.0000.0000.000
78A104MET00.0170.01521.965-0.411-0.4110.0000.0000.0000.000
79A105TYR0-0.001-0.01425.3000.0840.0840.0000.0000.0000.000
80A106ASN0-0.0050.00326.451-0.328-0.3280.0000.0000.0000.000
81A107ASP-1-0.775-0.84730.0178.7528.7520.0000.0000.0000.000
82A108PHE00.009-0.00530.808-0.012-0.0120.0000.0000.0000.000
83A109VAL0-0.007-0.00336.023-0.114-0.1140.0000.0000.0000.000
84A110ILE00.0060.01239.8200.1010.1010.0000.0000.0000.000
85A111VAL00.0070.00542.468-0.139-0.1390.0000.0000.0000.000
86A112GLY00.0600.00844.9070.0500.0500.0000.0000.0000.000
87A113PRO00.0390.03948.178-0.031-0.0310.0000.0000.0000.000
88A114LYS10.8880.92751.806-5.908-5.9080.0000.0000.0000.000
89A115ALA0-0.011-0.00853.551-0.027-0.0270.0000.0000.0000.000
90A116ASP-1-0.741-0.84851.4936.2016.2010.0000.0000.0000.000
91A117PRO00.0040.00252.951-0.061-0.0610.0000.0000.0000.000
92A118ALA00.005-0.00451.053-0.082-0.0820.0000.0000.0000.000
93A119LYS10.7930.90353.021-5.713-5.7130.0000.0000.0000.000
94A120ILE00.0640.03846.7960.0330.0330.0000.0000.0000.000
95A121LYS10.7920.90549.161-6.175-6.1750.0000.0000.0000.000
96A122ASP-1-0.972-0.97749.8316.1686.1680.0000.0000.0000.000
97A123ASP-1-0.864-0.92847.7206.5716.5710.0000.0000.0000.000
98A124GLU-1-0.969-0.98846.9186.7566.7560.0000.0000.0000.000
99A125SER0-0.089-0.07542.2360.2590.2590.0000.0000.0000.000
100A126VAL00.036-0.00938.445-0.092-0.0920.0000.0000.0000.000
101A127LEU0-0.056-0.03638.467-0.013-0.0130.0000.0000.0000.000
102A128ASP-1-0.797-0.86142.3567.0507.0500.0000.0000.0000.000
103A129VAL00.0800.05843.998-0.082-0.0820.0000.0000.0000.000
104A130PHE0-0.059-0.04238.911-0.052-0.0520.0000.0000.0000.000
105A131LYS10.8590.90744.174-7.311-7.3110.0000.0000.0000.000
106A132GLU-1-0.819-0.88146.6056.0796.0790.0000.0000.0000.000
107A133ILE0-0.037-0.02445.312-0.131-0.1310.0000.0000.0000.000
108A134ALA0-0.018-0.01045.988-0.104-0.1040.0000.0000.0000.000
109A135ASN0-0.037-0.02448.040-0.101-0.1010.0000.0000.0000.000
110A136LYS10.7770.88451.294-6.163-6.1630.0000.0000.0000.000
111A137ASN0-0.025-0.00450.6980.0010.0010.0000.0000.0000.000
112A138ALA00.0000.01249.962-0.092-0.0920.0000.0000.0000.000
113A139THR00.015-0.00148.0580.0830.0830.0000.0000.0000.000
114A140PHE0-0.029-0.00640.3020.0420.0420.0000.0000.0000.000
115A141ILE0-0.0080.01141.7320.0040.0040.0000.0000.0000.000
116A142SER0-0.064-0.05037.5690.1780.1780.0000.0000.0000.000
117A143ARG10.8130.86231.398-9.523-9.5230.0000.0000.0000.000
118A144GLY00.0250.01335.795-0.047-0.0470.0000.0000.0000.000
119A145ASP-1-0.741-0.84232.6719.3949.3940.0000.0000.0000.000
120A146ASP-1-0.875-0.91428.41010.30210.3020.0000.0000.0000.000
121A147SER0-0.030-0.03327.9620.4660.4660.0000.0000.0000.000
122A148GLY00.0610.02227.482-0.017-0.0170.0000.0000.0000.000
123A149THR0-0.013-0.02428.0420.0110.0110.0000.0000.0000.000
124A150HIS00.0310.03731.639-0.002-0.0020.0000.0000.0000.000
125A151LYS10.8570.91026.535-11.083-11.0830.0000.0000.0000.000
126A152LYS10.8210.91530.477-10.121-10.1210.0000.0000.0000.000
127A153GLU-1-0.727-0.82331.9148.1478.1470.0000.0000.0000.000
128A154MET00.0150.00332.781-0.229-0.2290.0000.0000.0000.000
129A155GLY00.0130.01532.886-0.079-0.0790.0000.0000.0000.000
130A156PHE0-0.051-0.02833.622-0.030-0.0300.0000.0000.0000.000
131A157TRP00.0550.01936.955-0.205-0.2050.0000.0000.0000.000
132A158ALA00.0560.03935.029-0.152-0.1520.0000.0000.0000.000
133A159GLN0-0.102-0.06334.501-0.191-0.1910.0000.0000.0000.000
134A160THR0-0.071-0.04738.046-0.191-0.1910.0000.0000.0000.000
135A161LYS10.8320.92438.605-8.462-8.4620.0000.0000.0000.000
136A162ILE00.0000.02141.673-0.157-0.1570.0000.0000.0000.000
137A163GLU-1-0.879-0.92840.2557.8427.8420.0000.0000.0000.000
138A164PRO0-0.034-0.00939.287-0.213-0.2130.0000.0000.0000.000
139A165ASN0-0.029-0.04442.5540.0170.0170.0000.0000.0000.000
140A166PHE0-0.0380.00544.443-0.136-0.1360.0000.0000.0000.000
141A167GLY00.0620.02347.6900.0610.0610.0000.0000.0000.000
142A168GLY0-0.042-0.02349.3600.0190.0190.0000.0000.0000.000
143A169TYR0-0.079-0.04639.0720.0910.0910.0000.0000.0000.000
144A170ARG10.9480.96344.366-6.552-6.5520.0000.0000.0000.000
145A171SER00.0340.01738.7590.1690.1690.0000.0000.0000.000
146A172VAL0-0.032-0.01939.612-0.059-0.0590.0000.0000.0000.000
147A173GLY00.0300.03436.561-0.070-0.0700.0000.0000.0000.000
148A174GLN0-0.074-0.03836.7760.0340.0340.0000.0000.0000.000
149A175GLY00.0690.03334.5950.1760.1760.0000.0000.0000.000
150A176MET00.0040.02134.896-0.126-0.1260.0000.0000.0000.000
151A177GLY00.0420.01336.709-0.191-0.1910.0000.0000.0000.000
152A178PRO0-0.004-0.01638.114-0.189-0.1890.0000.0000.0000.000
153A179THR00.0130.00838.308-0.199-0.1990.0000.0000.0000.000
154A180LEU00.0080.00340.072-0.175-0.1750.0000.0000.0000.000
155A181ASN00.021-0.00342.813-0.186-0.1860.0000.0000.0000.000
156A182MET00.0060.01344.068-0.226-0.2260.0000.0000.0000.000
157A183ALA00.005-0.00344.557-0.135-0.1350.0000.0000.0000.000
158A184SER00.0350.02346.428-0.131-0.1310.0000.0000.0000.000
159A185GLU-1-0.948-0.96148.7385.8745.8740.0000.0000.0000.000
160A186MET0-0.065-0.03949.062-0.074-0.0740.0000.0000.0000.000
161A187GLN0-0.087-0.04850.998-0.096-0.0960.0000.0000.0000.000
162A188GLY0-0.017-0.01648.386-0.065-0.0650.0000.0000.0000.000
163A189TYR0-0.045-0.07445.6270.0000.0000.0000.0000.0000.000
164A190THR0-0.017-0.02140.8840.1180.1180.0000.0000.0000.000
165A191MET0-0.0320.00034.575-0.037-0.0370.0000.0000.0000.000
166A192SER00.009-0.02237.4080.1030.1030.0000.0000.0000.000
167A193ASP-1-0.815-0.87233.4429.0949.0940.0000.0000.0000.000
168A194ARG10.8350.85735.326-8.468-8.4680.0000.0000.0000.000
169A195GLY00.0200.01335.292-0.205-0.2050.0000.0000.0000.000
170A196THR0-0.047-0.06635.349-0.184-0.1840.0000.0000.0000.000
171A197TRP00.007-0.00437.636-0.217-0.2170.0000.0000.0000.000
172A198LEU0-0.022-0.01238.840-0.191-0.1910.0000.0000.0000.000
173A199ALA0-0.037-0.01139.173-0.170-0.1700.0000.0000.0000.000
174A200TYR0-0.006-0.01039.615-0.161-0.1610.0000.0000.0000.000
175A201GLN00.0260.02443.437-0.074-0.0740.0000.0000.0000.000
176A202ASN0-0.041-0.02445.960-0.042-0.0420.0000.0000.0000.000
177A203LYS10.8630.95043.314-7.221-7.2210.0000.0000.0000.000
178A204LEU0-0.049-0.01143.9570.0280.0280.0000.0000.0000.000
179A205ASP-1-0.889-0.92848.6665.9225.9220.0000.0000.0000.000
180A206LEU0-0.070-0.03746.196-0.004-0.0040.0000.0000.0000.000
181A207GLU-1-0.833-0.90448.3526.1486.1480.0000.0000.0000.000
182A208ILE00.005-0.00142.7630.0950.0950.0000.0000.0000.000
183A209LEU0-0.092-0.04145.918-0.132-0.1320.0000.0000.0000.000
184A210PHE00.0700.03541.7750.0170.0170.0000.0000.0000.000
185A211GLN00.0460.01141.1250.3230.3230.0000.0000.0000.000
186A212GLY0-0.0020.01641.0020.1610.1610.0000.0000.0000.000
187A213ASP-1-0.656-0.82038.7698.2958.2950.0000.0000.0000.000
188A214GLU-1-0.866-0.92635.7359.2369.2360.0000.0000.0000.000
189A215LYS10.7800.87634.355-8.153-8.1530.0000.0000.0000.000
190A216LEU0-0.020-0.00633.9710.3110.3110.0000.0000.0000.000
191A217PHE00.0300.02233.0120.1640.1640.0000.0000.0000.000
192A218ASN0-0.064-0.04228.6770.1870.1870.0000.0000.0000.000
193A219PRO00.0020.00227.9150.2610.2610.0000.0000.0000.000
194A220TYR0-0.0020.00222.401-0.071-0.0710.0000.0000.0000.000
195A221GLN0-0.044-0.05021.522-0.173-0.1730.0000.0000.0000.000
196A222VAL00.0010.00915.1910.2800.2800.0000.0000.0000.000
197A223ILE0-0.050-0.03317.114-0.475-0.4750.0000.0000.0000.000
198A224LEU00.0300.02311.5680.7950.7950.0000.0000.0000.000
199A225VAL00.0280.02212.690-1.958-1.9580.0000.0000.0000.000
200A226ASN0-0.032-0.03213.3982.0392.0390.0000.0000.0000.000
201A227PRO00.0100.00811.7790.0370.0370.0000.0000.0000.000
202A228GLU-1-0.925-0.95513.58015.53215.5320.0000.0000.0000.000
203A229ARG10.8400.93016.949-16.520-16.5200.0000.0000.0000.000
204A230TYR0-0.064-0.04513.409-0.576-0.5760.0000.0000.0000.000
205A231PRO00.0260.01312.2472.1692.1690.0000.0000.0000.000
206A232THR0-0.030-0.01510.6781.4441.4440.0000.0000.0000.000
207A233ILE0-0.041-0.0018.7113.7003.7000.0000.0000.0000.000
208A234ASN0-0.001-0.0221.702-23.628-30.01217.132-6.331-4.4160.074
209A235TYR00.033-0.0025.761-1.985-1.973-0.0010.001-0.0120.000
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