FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: MN7MZ

Calculation Name: 5HQP-D-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 5HQP

Chain ID: D

ChEMBL ID:

UniProt ID: Q9BS26

Base Structure: X-ray

Registration Date: 2023-09-24

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 204
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2369910.758686
FMO2-HF: Nuclear repulsion 2285094.06709
FMO2-HF: Total energy -84816.691596
FMO2-MP2: Total energy -85061.32391


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(D:2:ILE)


Summations of interaction energy for fragment #1(D:2:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-20.067-11.63314.754-9.21-13.976-0.049
Interaction energy analysis for fragmet #1(D:2:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.030 / q_NPA : -0.013
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3D4SER0-0.091-0.0523.779-1.6720.605-0.047-1.118-1.1130.006
4D5LEU00.0240.0306.9050.4000.4000.0000.0000.0000.000
5D6ASP-1-0.808-0.8989.9390.3490.3490.0000.0000.0000.000
6D7THR0-0.046-0.06013.5700.0110.0110.0000.0000.0000.000
7D8GLU-1-1.001-0.97015.9480.2880.2880.0000.0000.0000.000
8D9ASN0-0.024-0.03012.0370.0090.0090.0000.0000.0000.000
9D10ILE0-0.010-0.01312.6500.0700.0700.0000.0000.0000.000
10D11ASP-1-0.884-0.95113.4090.2750.2750.0000.0000.0000.000
11D12GLU-1-0.952-0.95212.8650.7150.7150.0000.0000.0000.000
12D13ILE0-0.038-0.0287.8130.0450.0450.0000.0000.0000.000
13D14LEU0-0.0340.00911.278-0.051-0.0510.0000.0000.0000.000
14D15ASN0-0.045-0.05912.765-0.106-0.1060.0000.0000.0000.000
15D16ASN0-0.028-0.00612.295-0.002-0.0020.0000.0000.0000.000
16D17ALA00.0320.02810.5860.0050.0050.0000.0000.0000.000
17D18ASP-1-0.846-0.91412.3740.2230.2230.0000.0000.0000.000
18D19VAL0-0.109-0.04810.931-0.088-0.0880.0000.0000.0000.000
19D20ALA00.0780.0389.4260.0030.0030.0000.0000.0000.000
20D21LEU0-0.031-0.0117.273-0.019-0.0190.0000.0000.0000.000
21D22VAL00.0260.0077.129-0.217-0.2170.0000.0000.0000.000
22D23ASN0-0.006-0.0306.9710.1450.1450.0000.0000.0000.000
23D24PHE00.001-0.0028.8770.0020.0020.0000.0000.0000.000
24D25TYR0-0.115-0.1208.891-0.084-0.0840.0000.0000.0000.000
25D26ALA00.0720.01912.0250.0660.0660.0000.0000.0000.000
26D27ASP-1-0.784-0.86212.377-0.608-0.6080.0000.0000.0000.000
27D28TRP0-0.059-0.02514.762-0.015-0.0150.0000.0000.0000.000
28D29CYS0-0.075-0.01116.4350.0190.0190.0000.0000.0000.000
29D30ARG10.9940.98516.0460.3230.3230.0000.0000.0000.000
30D31PHE0-0.005-0.02916.180-0.040-0.0400.0000.0000.0000.000
31D32SER0-0.070-0.09912.181-0.040-0.0400.0000.0000.0000.000
32D33GLN00.0740.02811.417-0.089-0.0890.0000.0000.0000.000
33D34MET0-0.071-0.03612.066-0.051-0.0510.0000.0000.0000.000
34D35LEU0-0.0290.0219.1540.0030.0030.0000.0000.0000.000
35D36HIS00.0380.0276.978-0.173-0.1730.0000.0000.0000.000
36D37PRO00.0250.0106.223-0.357-0.3570.0000.0000.0000.000
37D38ILE00.0130.0227.762-0.063-0.0630.0000.0000.0000.000
38D39PHE0-0.064-0.0243.945-0.2590.0260.002-0.040-0.2470.000
39D40GLU-1-0.861-0.9512.826-8.438-5.6300.853-1.347-2.313-0.010
40D41GLU-1-0.920-0.9413.623-0.907-0.7310.0030.040-0.2190.000
41D42ALA0-0.040-0.0596.9580.2970.2970.0000.0000.0000.000
42D43SER-1-0.731-0.8752.359-12.837-8.6382.272-3.098-3.373-0.037
43D44ASP-1-0.940-1.0553.633-2.249-1.3750.014-0.410-0.478-0.002
44D45VAL0-0.103-0.0305.4140.3730.3730.0000.0000.0000.000
45D46ILE00.0320.0087.6420.1870.1870.0000.0000.0000.000
46D47LYS10.7640.9501.7663.721-0.3349.552-2.050-3.4470.007
47D48GLU-1-1.007-1.0146.3050.1600.1600.0000.0000.0000.000
48D49GLU-1-0.867-0.9198.624-0.221-0.2210.0000.0000.0000.000
49D50PHE0-0.113-0.02910.1730.0540.0540.0000.0000.0000.000
50D51PRO0-0.031-0.0198.8690.0040.0040.0000.0000.0000.000
51D52ASN00.011-0.0298.8490.2380.2380.0000.0000.0000.000
52D53GLU-1-0.941-0.95710.4940.6830.6830.0000.0000.0000.000
53D54ASN0-0.031-0.0138.8650.0950.0950.0000.0000.0000.000
54D55GLN00.0550.0389.836-0.149-0.1490.0000.0000.0000.000
55D56VAL0-0.038-0.0156.905-0.077-0.0770.0000.0000.0000.000
56D57VAL0-0.0070.0035.0110.1530.1530.0000.0000.0000.000
57D58PHE0-0.059-0.0142.881-0.2520.5440.088-0.181-0.7020.000
58D59ALA00.0700.0422.415-1.860-0.9652.018-0.994-1.919-0.013
59D60ARG10.9040.9664.7030.6920.871-0.001-0.012-0.1650.000
60D61VAL00.0570.0156.5230.2300.2300.0000.0000.0000.000
61D62ASP-1-0.744-0.82810.051-0.411-0.4110.0000.0000.0000.000
62D63CYS0-0.058-0.03012.4560.0780.0780.0000.0000.0000.000
63D64ASP-1-0.886-0.93315.527-0.204-0.2040.0000.0000.0000.000
64D65GLN0-0.040-0.03615.1290.0180.0180.0000.0000.0000.000
65D66HIS00.0350.02013.2970.0130.0130.0000.0000.0000.000
66D67SER0-0.0330.01116.7860.0100.0100.0000.0000.0000.000
67D68ASP-1-0.850-0.88218.6290.0450.0450.0000.0000.0000.000
68D69ILE00.010-0.04014.4660.0040.0040.0000.0000.0000.000
69D70ALA00.012-0.00217.419-0.017-0.0170.0000.0000.0000.000
70D71GLN00.0360.01418.243-0.013-0.0130.0000.0000.0000.000
71D72ARG10.8520.91017.827-0.064-0.0640.0000.0000.0000.000
72D73TYR00.0240.00316.892-0.001-0.0010.0000.0000.0000.000
73D74ARG10.8260.92219.6880.0190.0190.0000.0000.0000.000
74D75ILE00.0190.04416.003-0.014-0.0140.0000.0000.0000.000
75D76SER0-0.041-0.02119.2200.0050.0050.0000.0000.0000.000
76D77LYS10.8980.94218.8200.1880.1880.0000.0000.0000.000
77D78TYR00.0580.04215.323-0.009-0.0090.0000.0000.0000.000
78D79PRO0-0.045-0.03312.3930.0160.0160.0000.0000.0000.000
79D80THR0-0.035-0.03013.4460.0420.0420.0000.0000.0000.000
80D81LEU00.0020.0219.636-0.012-0.0120.0000.0000.0000.000
81D82LYN00.030-0.00911.8900.0580.0580.0000.0000.0000.000
82D83LEU00.0300.03711.927-0.028-0.0280.0000.0000.0000.000
83D84PHE0-0.014-0.01713.0140.0080.0080.0000.0000.0000.000
84D85ARG10.9150.94414.1580.0480.0480.0000.0000.0000.000
85D86ASN0-0.033-0.02415.631-0.041-0.0410.0000.0000.0000.000
86D87GLY00.0220.02515.8250.0050.0050.0000.0000.0000.000
87D88MET0-0.060-0.02117.113-0.021-0.0210.0000.0000.0000.000
88D89MET0-0.029-0.01617.617-0.008-0.0080.0000.0000.0000.000
89D90MET00.0020.00417.6080.0140.0140.0000.0000.0000.000
90D91LYS10.8870.94819.8190.0110.0110.0000.0000.0000.000
91D92ARG00.0390.05119.442-0.036-0.0360.0000.0000.0000.000
92D93GLU-1-0.930-0.96916.666-0.186-0.1860.0000.0000.0000.000
93D94TYR0-0.045-0.05713.2490.0180.0180.0000.0000.0000.000
94D95ARG10.8760.91316.2870.1720.1720.0000.0000.0000.000
95D96GLY0-0.022-0.00218.1140.0160.0160.0000.0000.0000.000
96D97GLN0-0.012-0.00717.063-0.045-0.0450.0000.0000.0000.000
97D98ARG11.0131.04112.5020.4860.4860.0000.0000.0000.000
98D99SER0-0.012-0.02712.8820.0430.0430.0000.0000.0000.000
99D100VAL00.1210.0649.6710.0190.0190.0000.0000.0000.000
100D101LYS10.9580.98111.6820.3690.3690.0000.0000.0000.000
101D102ALA0-0.028-0.00414.8820.0310.0310.0000.0000.0000.000
102D103LEU00.010-0.0028.7760.0530.0530.0000.0000.0000.000
103D104ALA00.0700.05111.1560.0330.0330.0000.0000.0000.000
104D105ASP-1-0.948-0.98512.042-0.264-0.2640.0000.0000.0000.000
105D106TYR0-0.035-0.02313.1420.0510.0510.0000.0000.0000.000
106D107ILE00.0190.0018.8310.0420.0420.0000.0000.0000.000
107D108ARG10.9330.96612.7620.3490.3490.0000.0000.0000.000
108D109GLN0-0.073-0.01914.6410.0380.0380.0000.0000.0000.000
109D110GLN0-0.063-0.04214.7490.0570.0570.0000.0000.0000.000
110D111LYN00.0190.01713.6530.0250.0250.0000.0000.0000.000
111D112SER0-0.072-0.02717.3450.0140.0140.0000.0000.0000.000
112D113ASP-1-0.887-0.94021.0180.0110.0110.0000.0000.0000.000
113D114PRO0-0.015-0.01122.1560.0100.0100.0000.0000.0000.000
114D115ILE0-0.131-0.04024.864-0.003-0.0030.0000.0000.0000.000
115D116GLN00.0230.00228.099-0.004-0.0040.0000.0000.0000.000
116D117GLU-1-0.873-0.91831.1580.0140.0140.0000.0000.0000.000
117D118ILE0-0.078-0.03333.018-0.005-0.0050.0000.0000.0000.000
118D119ARG10.8540.92534.2540.0030.0030.0000.0000.0000.000
119D120ASP-1-0.904-0.96739.5090.0020.0020.0000.0000.0000.000
120D121LEU0-0.0060.01541.102-0.002-0.0020.0000.0000.0000.000
121D122ALA00.007-0.00242.9140.0000.0000.0000.0000.0000.000
122D123GLU-1-0.813-0.93138.276-0.009-0.0090.0000.0000.0000.000
123D124ILE00.0030.00841.120-0.002-0.0020.0000.0000.0000.000
124D125THR0-0.027-0.02542.2730.0000.0000.0000.0000.0000.000
125D126THR0-0.099-0.04841.988-0.003-0.0030.0000.0000.0000.000
126D127LEU00.0000.01336.949-0.004-0.0040.0000.0000.0000.000
127D128ASP-1-0.852-0.92238.661-0.024-0.0240.0000.0000.0000.000
128D129ARG10.9100.94337.9280.0440.0440.0000.0000.0000.000
129D130SER0-0.076-0.04837.925-0.005-0.0050.0000.0000.0000.000
130D131LYS10.9190.96934.8110.0420.0420.0000.0000.0000.000
131D132ARG10.7701.07033.7110.0250.0250.0000.0000.0000.000
132D133ASN00.0060.01633.832-0.002-0.0020.0000.0000.0000.000
133D134ILE00.0250.02432.4310.0040.0040.0000.0000.0000.000
134D135ILE0-0.013-0.00133.5360.0000.0000.0000.0000.0000.000
135D136GLY00.0260.01034.1960.0030.0030.0000.0000.0000.000
136D137TYR0-0.022-0.01735.171-0.004-0.0040.0000.0000.0000.000
137D138PHE00.031-0.01233.0880.0050.0050.0000.0000.0000.000
138D139GLU-1-0.836-0.88936.9830.0340.0340.0000.0000.0000.000
139D140GLN0-0.026-0.01233.475-0.001-0.0010.0000.0000.0000.000
140D141LYS10.9570.97130.830-0.034-0.0340.0000.0000.0000.000
141D142ASP-1-0.842-0.91529.3190.0950.0950.0000.0000.0000.000
142D143SER0-0.148-0.07030.3460.0130.0130.0000.0000.0000.000
143D144ASP-1-0.847-0.94830.1040.1200.1200.0000.0000.0000.000
144D145ASN00.003-0.01730.3490.0060.0060.0000.0000.0000.000
145D146TYR00.0440.02527.544-0.007-0.0070.0000.0000.0000.000
146D147ARG10.9470.98725.441-0.128-0.1280.0000.0000.0000.000
147D148VAL0-0.070-0.02125.6650.0070.0070.0000.0000.0000.000
148D149PHE0-0.057-0.04127.562-0.006-0.0060.0000.0000.0000.000
149D150GLU-1-0.881-0.95123.5320.0730.0730.0000.0000.0000.000
150D151ARG10.9481.00221.995-0.098-0.0980.0000.0000.0000.000
151D152VAL0-0.066-0.06423.068-0.007-0.0070.0000.0000.0000.000
152D153ALA00.0230.01725.367-0.011-0.0110.0000.0000.0000.000
153D154ASN00.0280.01119.994-0.031-0.0310.0000.0000.0000.000
154D155ILE0-0.090-0.03521.385-0.017-0.0170.0000.0000.0000.000
155D156LEU00.0250.00022.404-0.011-0.0110.0000.0000.0000.000
156D157HIS0-0.029-0.00120.811-0.006-0.0060.0000.0000.0000.000
157D158ASP-1-0.974-0.98522.560-0.109-0.1090.0000.0000.0000.000
158D159ASP-1-0.948-0.96425.638-0.048-0.0480.0000.0000.0000.000
159D160CYS0-0.098-0.04628.6790.0050.0050.0000.0000.0000.000
160D161ALA0-0.026-0.00329.026-0.003-0.0030.0000.0000.0000.000
161D162PHE00.0600.02327.8970.0070.0070.0000.0000.0000.000
162D163LEU0-0.034-0.02130.607-0.004-0.0040.0000.0000.0000.000
163D164SER0-0.024-0.00731.2150.0050.0050.0000.0000.0000.000
164D165ALA00.0800.02833.767-0.004-0.0040.0000.0000.0000.000
165D166PHE0-0.102-0.07036.4400.0050.0050.0000.0000.0000.000
166D167GLY00.0220.01839.088-0.003-0.0030.0000.0000.0000.000
167D168ASP-1-0.900-0.93041.9760.0170.0170.0000.0000.0000.000
168D169VAL0-0.068-0.03041.7650.0010.0010.0000.0000.0000.000
169D178ASP-1-0.987-1.00436.8610.0530.0530.0000.0000.0000.000
170D179ASN00.005-0.02538.7010.0020.0020.0000.0000.0000.000
171D180ILE00.0350.01634.123-0.001-0.0010.0000.0000.0000.000
172D181ILE0-0.041-0.01537.3490.0000.0000.0000.0000.0000.000
173D182TYR-1-0.790-0.92637.207-0.013-0.0130.0000.0000.0000.000
174D183LYS10.9781.02538.4470.0050.0050.0000.0000.0000.000
175D184PRO00.130-0.10638.799-0.004-0.0040.0000.0000.0000.000
176D185PRO0-0.101-0.05439.128-0.002-0.0020.0000.0000.0000.000
177D186GLY0-0.078-0.05540.713-0.002-0.0020.0000.0000.0000.000
178D187HIS00.004-0.00843.7480.0010.0010.0000.0000.0000.000
179D188SER0-0.092-0.02446.5540.0020.0020.0000.0000.0000.000
180D189ALA00.0100.00644.6320.0020.0020.0000.0000.0000.000
181D190PRO00.015-0.00345.8530.0000.0000.0000.0000.0000.000
182D191ASP-1-0.739-0.88642.906-0.001-0.0010.0000.0000.0000.000
183D192MET0-0.101-0.04041.3640.0020.0020.0000.0000.0000.000
184D193VAL00.0540.01741.257-0.001-0.0010.0000.0000.0000.000
185D194TYR0-0.032-0.02736.0610.0000.0000.0000.0000.0000.000
186D195LEU0-0.020-0.00539.9530.0020.0020.0000.0000.0000.000
187D196GLY00.029-0.00539.090-0.001-0.0010.0000.0000.0000.000
188D197ALA0-0.055-0.01736.7660.0010.0010.0000.0000.0000.000
189D198MET00.0160.01333.7320.0010.0010.0000.0000.0000.000
190D199THR00.0260.02032.1330.0000.0000.0000.0000.0000.000
191D200ASN00.0150.01230.9530.0070.0070.0000.0000.0000.000
192D201PHE00.064-0.00127.703-0.005-0.0050.0000.0000.0000.000
193D202ASP-1-0.866-0.94628.2550.0810.0810.0000.0000.0000.000
194D203VAL0-0.064-0.02130.611-0.009-0.0090.0000.0000.0000.000
195D204THR0-0.0050.01131.503-0.007-0.0070.0000.0000.0000.000
196D205TYR0-0.0130.00526.463-0.008-0.0080.0000.0000.0000.000
197D206ASN00.038-0.01030.073-0.014-0.0140.0000.0000.0000.000
198D207TRP00.0250.02132.277-0.005-0.0050.0000.0000.0000.000
199D208ILE00.0570.01831.037-0.005-0.0050.0000.0000.0000.000
200D209GLN0-0.019-0.00129.023-0.013-0.0130.0000.0000.0000.000
201D210ASP-1-0.963-0.98031.059-0.001-0.0010.0000.0000.0000.000
202D211LYS10.7840.91434.526-0.016-0.0160.0000.0000.0000.000
203D212CYS0-0.048-0.01030.893-0.003-0.0030.0000.0000.0000.000
204D213VAL0-0.060-0.01030.346-0.009-0.0090.0000.0000.0000.000