FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: MN9GZ

Calculation Name: 2HWJ-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2HWJ

Chain ID: A

ChEMBL ID:

UniProt ID: A9CIY5

Base Structure: X-ray

Registration Date: 2023-09-22

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 201
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2273557.651427
FMO2-HF: Nuclear repulsion 2193727.41634
FMO2-HF: Total energy -79830.235086
FMO2-MP2: Total energy -80066.750021


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:4:ILE)


Summations of interaction energy for fragment #1(A:4:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-9.189-4.0233.582-3.938-4.811-0.011
Interaction energy analysis for fragmet #1(A:4:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.004 / q_NPA : -0.023
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A6GLU-1-0.841-0.9153.877-9.388-3.640-0.026-2.846-2.876-0.011
4A7PRO0-0.0490.0195.9320.2730.2730.0000.0000.0000.000
5A8ARG10.9320.9532.286-0.223-0.8053.608-1.092-1.9350.000
6A9LEU00.0030.0098.795-0.009-0.0090.0000.0000.0000.000
7A10SER0-0.036-0.02611.3670.0450.0450.0000.0000.0000.000
8A11ARG10.9610.97513.4920.0030.0030.0000.0000.0000.000
9A12ILE0-0.0070.01216.9510.0110.0110.0000.0000.0000.000
10A13ALA00.0690.04619.3250.0000.0000.0000.0000.0000.000
11A14ILE00.0770.01423.002-0.012-0.0120.0000.0000.0000.000
12A15ASP-1-0.882-0.91624.823-0.053-0.0530.0000.0000.0000.000
13A16LYS10.7850.85822.2730.0460.0460.0000.0000.0000.000
14A17LEU0-0.0310.00719.819-0.010-0.0100.0000.0000.0000.000
15A18ARG10.9020.95722.2780.1140.1140.0000.0000.0000.000
16A19PRO00.0230.01123.627-0.018-0.0180.0000.0000.0000.000
17A20THR0-0.031-0.02923.121-0.001-0.0010.0000.0000.0000.000
18A21GLN0-0.027-0.03826.373-0.013-0.0130.0000.0000.0000.000
19A22ILE00.0130.00829.9590.0030.0030.0000.0000.0000.000
20A23ALA00.0420.03433.2830.0060.0060.0000.0000.0000.000
21A24VAL0-0.026-0.00831.673-0.010-0.0100.0000.0000.0000.000
22A25GLY00.0420.05234.7330.0060.0060.0000.0000.0000.000
23A26PHE00.031-0.02236.4430.0000.0000.0000.0000.0000.000
24A27ARG10.9891.00838.4810.0630.0630.0000.0000.0000.000
25A28GLU-1-0.789-0.86533.481-0.108-0.1080.0000.0000.0000.000
26A29VAL0-0.028-0.01133.5840.0000.0000.0000.0000.0000.000
27A30GLU-1-0.797-0.88335.506-0.055-0.0550.0000.0000.0000.000
28A31LEU0-0.021-0.00237.8080.0030.0030.0000.0000.0000.000
29A32LYS10.9150.93730.9220.1050.1050.0000.0000.0000.000
30A33ARG10.7810.86434.6960.0540.0540.0000.0000.0000.000
31A34LYS10.7600.88435.8300.0490.0490.0000.0000.0000.000
32A35GLU-1-0.888-0.94734.536-0.077-0.0770.0000.0000.0000.000
33A36TRP00.0250.00128.9160.0020.0020.0000.0000.0000.000
34A37ARG10.8510.92334.0760.0470.0470.0000.0000.0000.000
35A38GLU-1-0.920-0.94637.076-0.036-0.0360.0000.0000.0000.000
36A39THR00.0240.02133.088-0.001-0.0010.0000.0000.0000.000
37A40ARG10.8090.87832.4550.0230.0230.0000.0000.0000.000
38A41LYS10.8760.94832.4360.0390.0390.0000.0000.0000.000
39A42LYS10.9230.95534.6920.0040.0040.0000.0000.0000.000
40A43ASP-1-0.834-0.90730.727-0.024-0.0240.0000.0000.0000.000
41A44GLY00.0160.02228.6010.0060.0060.0000.0000.0000.000
42A45ASP-1-0.935-0.96627.6840.0290.0290.0000.0000.0000.000
43A46ASP-1-0.839-0.91222.0770.0170.0170.0000.0000.0000.000
44A47PHE0-0.052-0.04417.871-0.008-0.0080.0000.0000.0000.000
45A48LEU0-0.040-0.00118.547-0.027-0.0270.0000.0000.0000.000
46A49GLY00.0290.00321.9370.0080.0080.0000.0000.0000.000
47A50ASN0-0.106-0.04622.267-0.003-0.0030.0000.0000.0000.000
48A51HIS00.023-0.00121.835-0.012-0.0120.0000.0000.0000.000
49A52ILE0-0.028-0.01116.2830.0060.0060.0000.0000.0000.000
50A53VAL0-0.0170.00318.940-0.008-0.0080.0000.0000.0000.000
51A54PRO00.0160.01816.820-0.017-0.0170.0000.0000.0000.000
52A55VAL00.012-0.01414.9960.0420.0420.0000.0000.0000.000
53A56VAL00.0030.01115.166-0.062-0.0620.0000.0000.0000.000
54A57ALA0-0.007-0.00113.0710.0500.0500.0000.0000.0000.000
55A58GLY00.015-0.01114.977-0.021-0.0210.0000.0000.0000.000
56A59PRO00.0160.00217.0790.0080.0080.0000.0000.0000.000
57A60LYS10.8670.92819.1860.0860.0860.0000.0000.0000.000
58A61ASP-1-0.869-0.95315.804-0.096-0.0960.0000.0000.0000.000
59A62ARG10.8540.97016.8210.0850.0850.0000.0000.0000.000
60A63ALA00.0710.03616.801-0.026-0.0260.0000.0000.0000.000
61A64TYR0-0.035-0.02618.1320.0330.0330.0000.0000.0000.000
62A65LEU00.0240.01819.508-0.030-0.0300.0000.0000.0000.000
63A66ILE00.0040.01018.8660.0050.0050.0000.0000.0000.000
64A67ASP-1-0.802-0.90021.821-0.205-0.2050.0000.0000.0000.000
65A68HIS0-0.082-0.05822.1780.0120.0120.0000.0000.0000.000
66A69HIS00.1090.04825.5660.0140.0140.0000.0000.0000.000
67A70HIS0-0.0050.01928.0360.0140.0140.0000.0000.0000.000
68A71LEU00.0100.01225.6830.0080.0080.0000.0000.0000.000
69A72VAL00.0590.02124.2520.0090.0090.0000.0000.0000.000
70A73LEU00.0130.01027.4670.0100.0100.0000.0000.0000.000
71A74ALA0-0.024-0.01330.8800.0080.0080.0000.0000.0000.000
72A75LEU00.0370.00126.2750.0070.0070.0000.0000.0000.000
73A76SER0-0.041-0.00829.3080.0080.0080.0000.0000.0000.000
74A77LYS10.8600.91630.6400.0680.0680.0000.0000.0000.000
75A78GLU-1-0.862-0.91032.706-0.041-0.0410.0000.0000.0000.000
76A79GLY0-0.0040.00933.0010.0050.0050.0000.0000.0000.000
77A80VAL0-0.054-0.01426.8320.0050.0050.0000.0000.0000.000
78A81GLU-1-0.849-0.93226.660-0.016-0.0160.0000.0000.0000.000
79A82HIS0-0.068-0.03621.833-0.011-0.0110.0000.0000.0000.000
80A83VAL0-0.009-0.00420.8480.0000.0000.0000.0000.0000.000
81A84LEU0-0.0110.00317.400-0.001-0.0010.0000.0000.0000.000
82A85THR00.0180.00114.7940.0030.0030.0000.0000.0000.000
83A86SER00.010-0.00711.970-0.031-0.0310.0000.0000.0000.000
84A87GLU-1-0.864-0.9079.875-0.551-0.5510.0000.0000.0000.000
85A88VAL00.008-0.00610.931-0.132-0.1320.0000.0000.0000.000
86A89ALA0-0.018-0.01211.956-0.040-0.0400.0000.0000.0000.000
87A90LYS10.8780.9318.5540.5610.5610.0000.0000.0000.000
88A91PHE0-0.006-0.01712.269-0.019-0.0190.0000.0000.0000.000
89A92SER0-0.0210.01213.1960.0200.0200.0000.0000.0000.000
90A93HIS00.0160.00614.4130.0230.0230.0000.0000.0000.000
91A94LEU00.0020.01815.9980.0240.0240.0000.0000.0000.000
92A95GLY00.0320.00719.3500.0150.0150.0000.0000.0000.000
93A96LYS10.9310.94122.6010.0870.0870.0000.0000.0000.000
94A97ASP-1-0.872-0.92724.526-0.119-0.1190.0000.0000.0000.000
95A98GLU-1-0.911-0.95822.409-0.198-0.1980.0000.0000.0000.000
96A99PHE00.007-0.00118.634-0.014-0.0140.0000.0000.0000.000
97A100TRP00.000-0.00722.283-0.014-0.0140.0000.0000.0000.000
98A101SER00.0320.02825.209-0.006-0.0060.0000.0000.0000.000
99A102VAL00.0480.01919.689-0.007-0.0070.0000.0000.0000.000
100A103MET0-0.032-0.02620.581-0.028-0.0280.0000.0000.0000.000
101A104ASP-1-0.868-0.93823.018-0.160-0.1600.0000.0000.0000.000
102A105HIS0-0.056-0.01224.5620.0060.0060.0000.0000.0000.000
103A106ARG10.8950.94616.1510.4280.4280.0000.0000.0000.000
104A107ASN0-0.062-0.02323.048-0.002-0.0020.0000.0000.0000.000
105A108LEU0-0.006-0.00719.344-0.009-0.0090.0000.0000.0000.000
106A109ILE0-0.057-0.02023.6950.0070.0070.0000.0000.0000.000
107A110TYR00.0430.01026.7770.0010.0010.0000.0000.0000.000
108A111PRO0-0.011-0.00430.2670.0070.0070.0000.0000.0000.000
109A112PHE0-0.002-0.02432.6490.0040.0040.0000.0000.0000.000
110A113ASP-1-0.786-0.88135.691-0.080-0.0800.0000.0000.0000.000
111A114ALA00.0670.04038.104-0.001-0.0010.0000.0000.0000.000
112A115GLN0-0.149-0.08439.9590.0020.0020.0000.0000.0000.000
113A116GLY0-0.026-0.02139.2380.0010.0010.0000.0000.0000.000
114A117LEU00.0020.00640.185-0.002-0.0020.0000.0000.0000.000
115A118ARG10.8030.91331.3210.1290.1290.0000.0000.0000.000
116A119ARG10.9150.96436.0990.0830.0830.0000.0000.0000.000
117A120GLN0-0.003-0.01334.477-0.007-0.0070.0000.0000.0000.000
118A121SER00.0640.02529.1300.0030.0030.0000.0000.0000.000
119A122GLY0-0.0250.00630.858-0.001-0.0010.0000.0000.0000.000
120A123ASP-1-0.861-0.94632.340-0.080-0.0800.0000.0000.0000.000
121A124ILE0-0.051-0.01228.0450.0020.0020.0000.0000.0000.000
122A125PRO00.0080.02630.7770.0020.0020.0000.0000.0000.000
123A126LYS10.8150.88728.2020.0860.0860.0000.0000.0000.000
124A127ASN0-0.009-0.02427.560-0.005-0.0050.0000.0000.0000.000
125A128ILE00.0700.02626.0850.0000.0000.0000.0000.0000.000
126A129HIS0-0.078-0.05129.5960.0020.0020.0000.0000.0000.000
127A130ASP-1-0.851-0.91132.521-0.065-0.0650.0000.0000.0000.000
128A131LEU0-0.069-0.01729.940-0.003-0.0030.0000.0000.0000.000
129A132GLU-1-0.808-0.91134.007-0.073-0.0730.0000.0000.0000.000
130A133ASP-1-0.856-0.93736.736-0.075-0.0750.0000.0000.0000.000
131A134ASP-1-0.751-0.87637.896-0.085-0.0850.0000.0000.0000.000
132A135PRO00.0210.01139.688-0.003-0.0030.0000.0000.0000.000
133A136PHE00.0700.01941.868-0.001-0.0010.0000.0000.0000.000
134A137ARG10.8180.92232.3220.1100.1100.0000.0000.0000.000
135A138SER0-0.037-0.02037.971-0.004-0.0040.0000.0000.0000.000
136A139LEU00.0220.02139.656-0.001-0.0010.0000.0000.0000.000
137A140ALA00.0470.02638.4010.0000.0000.0000.0000.0000.000
138A141GLY0-0.008-0.00236.749-0.004-0.0040.0000.0000.0000.000
139A142ALA0-0.039-0.01437.589-0.001-0.0010.0000.0000.0000.000
140A143LEU00.0490.01140.6290.0010.0010.0000.0000.0000.000
141A144ARG10.7970.90033.0700.1190.1190.0000.0000.0000.000
142A145MET0-0.109-0.05737.663-0.001-0.0010.0000.0000.0000.000
143A146ALA00.0210.02338.9420.0030.0030.0000.0000.0000.000
144A147GLY0-0.0170.00340.8830.0030.0030.0000.0000.0000.000
145A148GLY0-0.002-0.01441.8730.0010.0010.0000.0000.0000.000
146A149TYR0-0.037-0.02435.787-0.002-0.0020.0000.0000.0000.000
147A150ALA0-0.0030.00635.6610.0000.0000.0000.0000.0000.000
148A151LYS10.9660.96529.4450.1440.1440.0000.0000.0000.000
149A152VAL0-0.0100.00231.2770.0000.0000.0000.0000.0000.000
150A153ILE00.020-0.00726.208-0.002-0.0020.0000.0000.0000.000
151A154ILE0-0.0080.00226.913-0.013-0.0130.0000.0000.0000.000
152A155PRO00.0460.03826.1510.0050.0050.0000.0000.0000.000
153A156PHE00.014-0.00626.5520.0130.0130.0000.0000.0000.000
154A157SER00.0380.02430.7400.0130.0130.0000.0000.0000.000
155A158GLU-1-0.801-0.89332.133-0.132-0.1320.0000.0000.0000.000
156A159PHE0-0.011-0.00931.8270.0080.0080.0000.0000.0000.000
157A160GLY00.0170.02735.4590.0060.0060.0000.0000.0000.000
158A161TRP00.004-0.02037.0130.0110.0110.0000.0000.0000.000
159A162ALA0-0.018-0.01338.5100.0060.0060.0000.0000.0000.000
160A163ASP-1-0.828-0.90239.539-0.082-0.0820.0000.0000.0000.000
161A164PHE0-0.004-0.01141.3380.0050.0050.0000.0000.0000.000
162A165LEU00.018-0.00242.6260.0040.0040.0000.0000.0000.000
163A166ARG10.8290.90939.9820.0860.0860.0000.0000.0000.000
164A167ARG10.7720.86343.2210.0820.0820.0000.0000.0000.000
165A168ARG10.7470.86846.4020.0730.0730.0000.0000.0000.000
166A169ILE0-0.0140.01047.4480.0020.0020.0000.0000.0000.000
167A170ASP-1-0.854-0.93449.633-0.050-0.0500.0000.0000.0000.000
168A171ARG10.9420.94548.3110.0550.0550.0000.0000.0000.000
169A172ASP-1-0.854-0.91950.160-0.046-0.0460.0000.0000.0000.000
170A173LEU0-0.0050.01552.0300.0010.0010.0000.0000.0000.000
171A174LEU0-0.049-0.02745.2100.0000.0000.0000.0000.0000.000
172A175SER0-0.066-0.03248.795-0.001-0.0010.0000.0000.0000.000
173A176ASP-1-0.953-0.94350.289-0.039-0.0390.0000.0000.0000.000
174A177SER0-0.075-0.08652.3560.0010.0010.0000.0000.0000.000
175A178PHE00.0240.00442.887-0.003-0.0030.0000.0000.0000.000
176A179ASP-1-0.906-0.96748.093-0.055-0.0550.0000.0000.0000.000
177A180ASP-1-0.812-0.87249.926-0.045-0.0450.0000.0000.0000.000
178A181ALA00.008-0.00548.493-0.001-0.0010.0000.0000.0000.000
179A182LEU0-0.069-0.03644.593-0.003-0.0030.0000.0000.0000.000
180A183ALA0-0.013-0.01047.606-0.002-0.0020.0000.0000.0000.000
181A184GLU-1-0.796-0.88750.557-0.053-0.0530.0000.0000.0000.000
182A185ALA00.0390.02145.362-0.002-0.0020.0000.0000.0000.000
183A186MET0-0.042-0.01645.085-0.004-0.0040.0000.0000.0000.000
184A187LYS10.8320.90447.6480.0510.0510.0000.0000.0000.000
185A188LEU0-0.0120.00047.917-0.001-0.0010.0000.0000.0000.000
186A189ALA0-0.0090.00344.074-0.002-0.0020.0000.0000.0000.000
187A190LYS10.7870.88643.6350.0760.0760.0000.0000.0000.000
188A191SER0-0.049-0.02447.9590.0020.0020.0000.0000.0000.000
189A192ARG11.0230.97748.0530.0570.0570.0000.0000.0000.000
190A193GLU-1-0.863-0.89748.245-0.067-0.0670.0000.0000.0000.000
191A194ALA00.0220.02544.110-0.002-0.0020.0000.0000.0000.000
192A195ARG10.8800.91143.4300.0690.0690.0000.0000.0000.000
193A196HIS0-0.0260.00141.683-0.002-0.0020.0000.0000.0000.000
194A197LEU00.0040.01339.431-0.005-0.0050.0000.0000.0000.000
195A198PRO00.0160.01634.5890.0000.0000.0000.0000.0000.000
196A199GLY00.0310.00436.7180.0010.0010.0000.0000.0000.000
197A200TRP0-0.026-0.00837.3070.0040.0040.0000.0000.0000.000
198A201CYS0-0.0150.00241.0150.0000.0000.0000.0000.0000.000
199A202GLY00.0590.02842.9240.0030.0030.0000.0000.0000.000
200A203VAL0-0.0110.00046.715-0.001-0.0010.0000.0000.0000.000
201A204GLU-1-0.970-0.97845.004-0.080-0.0800.0000.0000.0000.000