FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: MNQ4Z

Calculation Name: 1IQ0-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1IQ0

Chain ID: A

ChEMBL ID:

UniProt ID: Q5SM45

Base Structure: X-ray

Registration Date: 2023-09-24

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 592
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -12505742.003634
FMO2-HF: Nuclear repulsion 12276766.78868
FMO2-HF: Total energy -228975.214954
FMO2-MP2: Total energy -229655.452235


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-33.116-31.03632.472-11.274-23.278-0.06
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.023 / q_NPA : 0.012
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ARG10.8640.9032.239-1.099-1.5316.179-1.645-4.1030.002
4A4ARG10.7990.8122.256-5.446-10.80114.549-3.684-5.5100.011
5A5ALA00.0190.0203.952-2.797-3.2040.0000.889-0.4830.002
6A6LEU0-0.017-0.0045.631-1.277-1.2770.0000.0000.0000.000
7A7GLU-1-0.804-0.9186.5011.3001.3000.0000.0000.0000.000
8A8GLU-1-0.824-0.8717.9921.2961.2960.0000.0000.0000.000
9A9ALA00.0100.0109.741-0.434-0.4340.0000.0000.0000.000
10A10ILE0-0.012-0.01010.598-0.308-0.3080.0000.0000.0000.000
11A11ALA00.0080.00212.423-0.209-0.2090.0000.0000.0000.000
12A12GLN0-0.039-0.01812.902-0.331-0.3310.0000.0000.0000.000
13A13ALA00.0780.03815.768-0.123-0.1230.0000.0000.0000.000
14A14LEU0-0.038-0.02615.428-0.103-0.1030.0000.0000.0000.000
15A15LYS10.8870.93416.526-0.911-0.9110.0000.0000.0000.000
16A16GLU-1-0.970-0.97219.0350.5890.5890.0000.0000.0000.000
17A17MET0-0.078-0.03119.789-0.061-0.0610.0000.0000.0000.000
18A18GLY0-0.033-0.00423.303-0.044-0.0440.0000.0000.0000.000
19A19VAL0-0.012-0.00420.702-0.028-0.0280.0000.0000.0000.000
20A20PRO0-0.020-0.00220.0930.0610.0610.0000.0000.0000.000
21A21VAL0-0.025-0.01317.2050.0040.0040.0000.0000.0000.000
22A22ARG10.8630.8889.403-1.755-1.7550.0000.0000.0000.000
23A23LEU0-0.034-0.01612.582-0.138-0.1380.0000.0000.0000.000
24A24LYS10.8450.9296.133-0.150-0.1500.0000.0000.0000.000
25A25VAL0-0.036-0.0126.111-0.216-0.2160.0000.0000.0000.000
26A26ALA0-0.009-0.0067.397-0.171-0.1710.0000.0000.0000.000
27A27ARG10.8330.8898.9970.4430.4430.0000.0000.0000.000
28A28ALA0-0.0150.00310.8890.0020.0020.0000.0000.0000.000
29A29PRO0-0.032-0.03014.340-0.066-0.0660.0000.0000.0000.000
30A30LYS10.9981.00117.6100.1370.1370.0000.0000.0000.000
31A31ASP-1-0.847-0.91118.878-0.055-0.0550.0000.0000.0000.000
32A32LYS10.8100.89219.408-0.014-0.0140.0000.0000.0000.000
33A33PRO00.014-0.00319.2620.0000.0000.0000.0000.0000.000
34A34GLY00.0410.02416.0380.0500.0500.0000.0000.0000.000
35A35ASP-1-0.792-0.86412.2980.0600.0600.0000.0000.0000.000
36A36TYR0-0.037-0.0506.6670.1390.1390.0000.0000.0000.000
37A37GLY00.0140.01511.251-0.033-0.0330.0000.0000.0000.000
38A38VAL0-0.0030.01311.5640.0320.0320.0000.0000.0000.000
39A39PRO00.0050.01213.343-0.065-0.0650.0000.0000.0000.000
40A40LEU00.0390.01116.4550.0350.0350.0000.0000.0000.000
41A41PHE0-0.019-0.01919.185-0.022-0.0220.0000.0000.0000.000
42A42ALA00.0060.01419.459-0.022-0.0220.0000.0000.0000.000
43A43LEU00.0950.03618.733-0.023-0.0230.0000.0000.0000.000
44A44ALA0-0.0120.00122.352-0.018-0.0180.0000.0000.0000.000
45A45LYS10.9360.96924.992-0.168-0.1680.0000.0000.0000.000
46A46GLU-1-0.889-0.93723.0870.3210.3210.0000.0000.0000.000
47A47LEU00.0190.00523.717-0.020-0.0200.0000.0000.0000.000
48A48ARG10.7880.89527.490-0.211-0.2110.0000.0000.0000.000
49A49LYS10.9390.97227.315-0.252-0.2520.0000.0000.0000.000
50A50PRO00.0410.01127.2810.0050.0050.0000.0000.0000.000
51A51PRO00.0560.03422.9690.0150.0150.0000.0000.0000.000
52A52GLN0-0.006-0.01623.1110.0370.0370.0000.0000.0000.000
53A53ALA0-0.017-0.00324.6760.0110.0110.0000.0000.0000.000
54A54ILE00.0170.01521.4540.0100.0100.0000.0000.0000.000
55A55ALA00.0120.01420.2070.0390.0390.0000.0000.0000.000
56A56GLN0-0.053-0.04920.9520.0260.0260.0000.0000.0000.000
57A57GLU-1-0.827-0.89023.3780.3700.3700.0000.0000.0000.000
58A58LEU00.016-0.00315.8480.0200.0200.0000.0000.0000.000
59A59LYS10.8360.88819.296-0.335-0.3350.0000.0000.0000.000
60A60ASP-1-0.859-0.89320.3110.3260.3260.0000.0000.0000.000
61A61ARG10.7960.87821.479-0.410-0.4100.0000.0000.0000.000
62A62LEU0-0.0240.00113.8070.0460.0460.0000.0000.0000.000
63A63PRO0-0.0230.00115.352-0.046-0.0460.0000.0000.0000.000
64A64LEU00.010-0.00814.1940.1420.1420.0000.0000.0000.000
65A65PRO00.0140.0078.889-0.049-0.0490.0000.0000.0000.000
66A66GLU-1-0.816-0.9099.0270.0980.0980.0000.0000.0000.000
67A67PHE00.0450.0335.958-0.163-0.1630.0000.0000.0000.000
68A68VAL0-0.079-0.03710.313-0.053-0.0530.0000.0000.0000.000
69A69GLU-1-0.862-0.92412.9750.0790.0790.0000.0000.0000.000
70A70GLU-1-0.857-0.90116.3530.1920.1920.0000.0000.0000.000
71A71ALA00.0100.00116.7370.0560.0560.0000.0000.0000.000
72A72VAL0-0.0050.00218.117-0.040-0.0400.0000.0000.0000.000
73A73PRO00.0230.01419.4240.0150.0150.0000.0000.0000.000
74A74VAL0-0.0080.00619.990-0.044-0.0440.0000.0000.0000.000
75A75GLY00.0140.00721.1870.0030.0030.0000.0000.0000.000
76A76GLY0-0.018-0.03122.016-0.018-0.0180.0000.0000.0000.000
77A77TYR00.0040.00115.6300.0150.0150.0000.0000.0000.000
78A78LEU0-0.032-0.00316.261-0.038-0.0380.0000.0000.0000.000
79A79ASN0-0.019-0.02414.9770.1000.1000.0000.0000.0000.000
80A80PHE00.0370.00312.1420.0440.0440.0000.0000.0000.000
81A81ARG10.8050.86214.049-0.213-0.2130.0000.0000.0000.000
82A82LEU00.0020.0069.8210.0400.0400.0000.0000.0000.000
83A83ARG10.8290.88812.186-0.184-0.1840.0000.0000.0000.000
84A84THR00.0280.00313.117-0.042-0.0420.0000.0000.0000.000
85A85GLU-1-0.773-0.85313.631-0.217-0.2170.0000.0000.0000.000
86A86ALA00.0530.0279.438-0.081-0.0810.0000.0000.0000.000
87A87LEU0-0.031-0.0049.214-0.191-0.1910.0000.0000.0000.000
88A88LEU00.016-0.0069.683-0.200-0.2000.0000.0000.0000.000
89A89ARG10.8450.9089.1690.2360.2360.0000.0000.0000.000
90A90GLU-1-0.753-0.8522.460-7.616-5.6402.245-2.230-1.991-0.024
91A91ALA0-0.0170.0016.797-0.358-0.3580.0000.0000.0000.000
92A92LEU0-0.033-0.0028.7900.0000.0000.0000.0000.0000.000
93A93ARG10.7030.8072.3124.4205.5181.560-1.123-1.536-0.004
94A94PRO0-0.036-0.0248.524-0.137-0.1370.0000.0000.0000.000
95A95LYS10.8570.9486.3791.4861.4860.0000.0000.0000.000
96A96ALA0-0.029-0.0257.2490.5140.5140.0000.0000.0000.000
97A97PRO0-0.010-0.0087.585-0.391-0.3910.0000.0000.0000.000
98A98PHE00.0170.0112.984-0.6520.2050.101-0.147-0.8110.000
99A99PRO0-0.023-0.0257.0360.1750.1750.0000.0000.0000.000
100A100ARG10.8400.90610.1140.2040.2040.0000.0000.0000.000
101A101ARG10.8970.9409.4410.0980.0980.0000.0000.0000.000
102A102PRO0-0.028-0.02514.841-0.054-0.0540.0000.0000.0000.000
103A103GLY00.0540.03218.2820.0250.0250.0000.0000.0000.000
104A104VAL0-0.016-0.01519.516-0.015-0.0150.0000.0000.0000.000
105A105VAL00.0070.00816.9690.0220.0220.0000.0000.0000.000
106A106LEU0-0.009-0.01720.324-0.028-0.0280.0000.0000.0000.000
107A107VAL0-0.010-0.00619.5970.0110.0110.0000.0000.0000.000
108A108GLU-1-0.783-0.85822.825-0.098-0.0980.0000.0000.0000.000
109A109HIS00.0240.00524.4200.0010.0010.0000.0000.0000.000
110A110THR0-0.037-0.01226.8180.0020.0020.0000.0000.0000.000
111A111SER0-0.005-0.03629.7140.0020.0020.0000.0000.0000.000
112A112VAL0-0.0290.01332.4170.0060.0060.0000.0000.0000.000
113A113ASN00.011-0.00235.2430.0080.0080.0000.0000.0000.000
114A114PRO00.0190.03739.011-0.004-0.0040.0000.0000.0000.000
115A115ASN0-0.020-0.02540.222-0.001-0.0010.0000.0000.0000.000
116A116LYS10.8110.90040.9270.0960.0960.0000.0000.0000.000
117A117GLU-1-0.779-0.86239.967-0.098-0.0980.0000.0000.0000.000
118A118LEU00.0250.02233.3450.0030.0030.0000.0000.0000.000
119A119HIS00.0300.00235.656-0.005-0.0050.0000.0000.0000.000
120A120VAL00.0700.01333.065-0.006-0.0060.0000.0000.0000.000
121A121GLY0-0.0210.00331.624-0.008-0.0080.0000.0000.0000.000
122A122HIS00.0490.01731.201-0.006-0.0060.0000.0000.0000.000
123A123LEU00.0130.01628.292-0.009-0.0090.0000.0000.0000.000
124A124ARG10.8490.90623.8350.1730.1730.0000.0000.0000.000
125A125ASN0-0.0100.00225.116-0.026-0.0260.0000.0000.0000.000
126A126ILE00.0470.02025.170-0.013-0.0130.0000.0000.0000.000
127A127ALA0-0.007-0.00723.645-0.020-0.0200.0000.0000.0000.000
128A128LEU00.0030.00019.526-0.040-0.0400.0000.0000.0000.000
129A129GLY00.0420.00920.106-0.027-0.0270.0000.0000.0000.000
130A130ASP-1-0.784-0.86020.808-0.375-0.3750.0000.0000.0000.000
131A131ALA00.0290.02017.451-0.032-0.0320.0000.0000.0000.000
132A132ILE00.0120.00714.589-0.061-0.0610.0000.0000.0000.000
133A133ALA0-0.0060.00515.867-0.026-0.0260.0000.0000.0000.000
134A134ARG10.7370.86416.2050.4370.4370.0000.0000.0000.000
135A135ILE00.0050.00410.859-0.071-0.0710.0000.0000.0000.000
136A136LEU00.008-0.00211.577-0.107-0.1070.0000.0000.0000.000
137A137ALA00.0060.01713.0370.0060.0060.0000.0000.0000.000
138A138TYR00.0400.0217.3950.1610.1610.0000.0000.0000.000
139A139ALA0-0.011-0.0028.483-0.221-0.2210.0000.0000.0000.000
140A140GLY00.0310.0269.5550.2040.2040.0000.0000.0000.000
141A141ARG10.7870.88111.6400.2000.2000.0000.0000.0000.000
142A142GLU-1-0.789-0.87714.650-0.132-0.1320.0000.0000.0000.000
143A143VAL0-0.041-0.01416.7530.0160.0160.0000.0000.0000.000
144A144LEU0-0.0180.00019.6780.0020.0020.0000.0000.0000.000
145A145VAL0-0.039-0.01722.0900.0020.0020.0000.0000.0000.000
146A146LEU0-0.017-0.00624.6290.0100.0100.0000.0000.0000.000
147A147ASN00.0140.00327.9050.0000.0000.0000.0000.0000.000
148A148TYR0-0.066-0.06230.6540.0070.0070.0000.0000.0000.000
149A149ILE00.0040.00333.683-0.003-0.0030.0000.0000.0000.000
150A150ASP-1-0.775-0.89737.150-0.052-0.0520.0000.0000.0000.000
151A151ASP-1-0.794-0.88939.934-0.061-0.0610.0000.0000.0000.000
152A152THR0-0.051-0.03242.7900.0040.0040.0000.0000.0000.000
153A153GLY00.0520.04143.5780.0030.0030.0000.0000.0000.000
154A154ARG10.8330.85844.6950.0370.0370.0000.0000.0000.000
155A155GLN00.0040.01842.670-0.003-0.0030.0000.0000.0000.000
156A156ALA00.0640.02143.965-0.002-0.0020.0000.0000.0000.000
157A157ALA00.0300.02645.7510.0000.0000.0000.0000.0000.000
158A158GLU-1-0.764-0.85948.125-0.053-0.0530.0000.0000.0000.000
159A159THR0-0.053-0.03046.2280.0020.0020.0000.0000.0000.000
160A160LEU00.0220.01148.1260.0000.0000.0000.0000.0000.000
161A161PHE00.0230.01250.9700.0010.0010.0000.0000.0000.000
162A162ALA0-0.019-0.01051.8330.0010.0010.0000.0000.0000.000
163A163LEU0-0.016-0.01749.5880.0010.0010.0000.0000.0000.000
164A164ARG10.9450.97753.8940.0450.0450.0000.0000.0000.000
165A165HIS0-0.012-0.00556.8130.0030.0030.0000.0000.0000.000
166A166TYR0-0.092-0.08554.9710.0010.0010.0000.0000.0000.000
167A167GLY0-0.0080.00358.672-0.001-0.0010.0000.0000.0000.000
168A168LEU0-0.055-0.02553.413-0.001-0.0010.0000.0000.0000.000
169A169THR00.0150.00955.2330.0000.0000.0000.0000.0000.000
170A170TRP0-0.036-0.01947.8620.0010.0010.0000.0000.0000.000
171A171ASP-1-0.781-0.89051.655-0.076-0.0760.0000.0000.0000.000
172A172GLY0-0.012-0.00451.5600.0000.0000.0000.0000.0000.000
173A173LYS10.7880.88049.0040.0720.0720.0000.0000.0000.000
174A174GLU-1-0.785-0.85347.437-0.082-0.0820.0000.0000.0000.000
175A175LYS10.8210.89638.2200.1260.1260.0000.0000.0000.000
176A176TYR00.030-0.00244.4880.0030.0030.0000.0000.0000.000
177A177ASP-1-0.722-0.86239.719-0.108-0.1080.0000.0000.0000.000
178A178HIS0-0.037-0.02840.1900.0070.0070.0000.0000.0000.000
179A179PHE0-0.056-0.00944.5960.0040.0040.0000.0000.0000.000
180A180ALA00.0250.01145.4340.0040.0040.0000.0000.0000.000
181A181GLY00.0540.01145.2060.0030.0030.0000.0000.0000.000
182A182ARG10.7670.84546.0310.0750.0750.0000.0000.0000.000
183A183ALA0-0.0040.00149.2490.0030.0030.0000.0000.0000.000
184A184TYR0-0.049-0.04144.8850.0030.0030.0000.0000.0000.000
185A185VAL0-0.017-0.01747.2070.0030.0030.0000.0000.0000.000
186A186ARG10.9100.97849.7920.0540.0540.0000.0000.0000.000
187A187LEU00.0420.02751.1980.0020.0020.0000.0000.0000.000
188A188HIS10.7760.88048.3710.0570.0570.0000.0000.0000.000
189A189GLN0-0.081-0.05251.9090.0000.0000.0000.0000.0000.000
190A190ASP-1-0.814-0.86054.518-0.041-0.0410.0000.0000.0000.000
191A191PRO0-0.034-0.03057.5420.0010.0010.0000.0000.0000.000
192A192GLU-1-0.857-0.90360.286-0.031-0.0310.0000.0000.0000.000
193A193TYR0-0.023-0.03550.9490.0010.0010.0000.0000.0000.000
194A194GLU-1-0.891-0.95655.665-0.036-0.0360.0000.0000.0000.000
195A195ARG10.7860.87758.2950.0320.0320.0000.0000.0000.000
196A196LEU0-0.013-0.00857.6440.0010.0010.0000.0000.0000.000
197A197GLN0-0.0110.00353.5820.0000.0000.0000.0000.0000.000
198A198PRO0-0.010-0.00956.6150.0000.0000.0000.0000.0000.000
199A199ALA00.0710.04058.4080.0000.0000.0000.0000.0000.000
200A200ILE0-0.037-0.01152.256-0.002-0.0020.0000.0000.0000.000
201A201GLU-1-0.783-0.86652.953-0.037-0.0370.0000.0000.0000.000
202A202GLU-1-0.961-0.97254.909-0.031-0.0310.0000.0000.0000.000
203A203VAL0-0.044-0.02551.957-0.001-0.0010.0000.0000.0000.000
204A204LEU0-0.023-0.01648.717-0.002-0.0020.0000.0000.0000.000
205A205HIS00.0040.01551.0690.0010.0010.0000.0000.0000.000
206A206ALA00.0240.00652.8170.0000.0000.0000.0000.0000.000
207A207LEU0-0.041-0.01346.375-0.001-0.0010.0000.0000.0000.000
208A208GLU-1-0.895-0.95648.117-0.034-0.0340.0000.0000.0000.000
209A209ARG10.7090.84348.7430.0310.0310.0000.0000.0000.000
210A210GLY0-0.010-0.00247.8920.0000.0000.0000.0000.0000.000
211A211GLU-1-0.903-0.94248.697-0.037-0.0370.0000.0000.0000.000
212A212LEU0-0.028-0.00450.0700.0000.0000.0000.0000.0000.000
213A213ARG10.8360.90741.4600.0610.0610.0000.0000.0000.000
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