FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: MV29Z

Calculation Name: 4OZW-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4OZW

Chain ID: A

ChEMBL ID:

UniProt ID: Q06749

Base Structure: X-ray

Registration Date: 2023-06-26

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 333
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5434460.364654
FMO2-HF: Nuclear repulsion 5301547.326429
FMO2-HF: Total energy -132913.038225
FMO2-MP2: Total energy -133298.262261


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:28:ALA)


Summations of interaction energy for fragment #1(A:28:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
2.3564.70.023-1.12-1.2470.004
Interaction energy analysis for fragmet #1(A:28:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.010 / q_NPA : 0.005
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A30LEU0-0.046-0.0223.638-1.0760.7630.005-0.928-0.9160.005
4A31VAL0-0.023-0.0095.3690.5180.5180.0000.0000.0000.000
5A32PRO0-0.0280.0037.7930.0610.0610.0000.0000.0000.000
6A33PRO00.0370.01010.7750.0350.0350.0000.0000.0000.000
7A34PRO00.0680.01312.201-0.008-0.0080.0000.0000.0000.000
8A35GLY00.0410.03913.7890.0140.0140.0000.0000.0000.000
9A36TYR0-0.034-0.04214.5070.0170.0170.0000.0000.0000.000
10A37TYR00.0260.0128.984-0.014-0.0140.0000.0000.0000.000
11A38ALA0-0.0280.01115.8600.0350.0350.0000.0000.0000.000
12A39ALA00.0200.02419.575-0.018-0.0180.0000.0000.0000.000
13A40VAL0-0.051-0.03321.874-0.002-0.0020.0000.0000.0000.000
14A41GLY0-0.0070.00824.4560.0120.0120.0000.0000.0000.000
15A42GLU-1-0.882-0.95327.581-0.088-0.0880.0000.0000.0000.000
16A43ARG10.8580.94831.1410.1040.1040.0000.0000.0000.000
17A44LYS11.0151.02633.3110.0580.0580.0000.0000.0000.000
18A45GLY00.018-0.00836.603-0.001-0.0010.0000.0000.0000.000
19A46SER0-0.034-0.01237.5110.0020.0020.0000.0000.0000.000
20A47ALA0-0.008-0.00437.401-0.006-0.0060.0000.0000.0000.000
21A48GLY00.0140.02237.4090.0040.0040.0000.0000.0000.000
22A49SER00.0340.00837.675-0.003-0.0030.0000.0000.0000.000
23A50CYS0-0.054-0.01530.333-0.010-0.0100.0000.0000.0000.000
24A51PRO0-0.0090.00436.1790.0040.0040.0000.0000.0000.000
25A52ALA00.0350.01437.180-0.005-0.0050.0000.0000.0000.000
26A53VAL0-0.026-0.00133.237-0.003-0.0030.0000.0000.0000.000
27A54PRO00.0040.00234.4050.0060.0060.0000.0000.0000.000
28A55PRO00.0490.01835.765-0.007-0.0070.0000.0000.0000.000
29A56PRO00.0120.00533.052-0.003-0.0030.0000.0000.0000.000
30A57TYR0-0.003-0.01533.7900.0070.0070.0000.0000.0000.000
31A58THR00.015-0.00533.460-0.010-0.0100.0000.0000.0000.000
32A59GLY00.0130.02835.2070.0030.0030.0000.0000.0000.000
33A60SER0-0.022-0.04135.770-0.009-0.0090.0000.0000.0000.000
34A61LEU0-0.068-0.00931.3460.0000.0000.0000.0000.0000.000
35A62VAL00.0250.02335.566-0.003-0.0030.0000.0000.0000.000
36A63PHE0-0.0060.00634.7580.0030.0030.0000.0000.0000.000
37A64THR00.0300.01239.5200.0010.0010.0000.0000.0000.000
38A65SER00.0180.01439.874-0.006-0.0060.0000.0000.0000.000
39A66LYS10.8890.92438.0170.1040.1040.0000.0000.0000.000
40A67TYR0-0.0200.00037.9730.0030.0030.0000.0000.0000.000
41A68GLU-1-0.861-0.90742.841-0.072-0.0720.0000.0000.0000.000
42A69GLY00.0590.02445.0510.0020.0020.0000.0000.0000.000
43A70SER0-0.052-0.01544.2300.0020.0020.0000.0000.0000.000
44A71ASP-1-0.759-0.86345.775-0.065-0.0650.0000.0000.0000.000
45A72SER0-0.015-0.02943.065-0.004-0.0040.0000.0000.0000.000
46A73ALA00.0480.04941.646-0.004-0.0040.0000.0000.0000.000
47A74ARG10.8270.90435.8860.1030.1030.0000.0000.0000.000
48A75ALA00.0720.04340.411-0.006-0.0060.0000.0000.0000.000
49A76THR00.0420.02042.5040.0010.0010.0000.0000.0000.000
50A77LEU0-0.076-0.03042.268-0.003-0.0030.0000.0000.0000.000
51A78ASN00.0520.02545.1220.0040.0040.0000.0000.0000.000
52A79VAL00.0880.02346.224-0.003-0.0030.0000.0000.0000.000
53A80LYS10.8630.91947.3550.0690.0690.0000.0000.0000.000
54A81ALA00.0050.00345.185-0.002-0.0020.0000.0000.0000.000
55A82GLU-1-0.712-0.84740.724-0.101-0.1010.0000.0000.0000.000
56A83LYS10.9700.99143.0940.0640.0640.0000.0000.0000.000
57A84THR0-0.014-0.01044.898-0.001-0.0010.0000.0000.0000.000
58A85PHE0-0.005-0.00235.886-0.003-0.0030.0000.0000.0000.000
59A86ARG10.8470.90037.1740.1040.1040.0000.0000.0000.000
60A87SER0-0.029-0.02440.788-0.002-0.0020.0000.0000.0000.000
61A88GLN00.0340.01840.497-0.005-0.0050.0000.0000.0000.000
62A89ILE0-0.0040.01035.584-0.004-0.0040.0000.0000.0000.000
63A90LYS10.8280.92236.8850.1050.1050.0000.0000.0000.000
64A91ASP-1-0.784-0.89337.282-0.118-0.1180.0000.0000.0000.000
65A92ILE00.0050.00031.893-0.008-0.0080.0000.0000.0000.000
66A93THR0-0.067-0.03832.923-0.007-0.0070.0000.0000.0000.000
67A94ASP-1-0.840-0.92034.101-0.119-0.1190.0000.0000.0000.000
68A95MET00.0080.03428.7050.0000.0000.0000.0000.0000.000
69A96GLU-1-0.725-0.81529.011-0.199-0.1990.0000.0000.0000.000
70A97ARG10.8600.93129.7660.1460.1460.0000.0000.0000.000
71A98GLY00.0420.01231.8610.0010.0010.0000.0000.0000.000
72A99ALA00.0610.02528.1200.0010.0010.0000.0000.0000.000
73A100THR0-0.001-0.01225.9480.0010.0010.0000.0000.0000.000
74A101LYS10.8340.92727.8890.1170.1170.0000.0000.0000.000
75A102LEU00.0390.02329.9380.0040.0040.0000.0000.0000.000
76A103VAL00.0410.02323.3750.0040.0040.0000.0000.0000.000
77A104THR0-0.065-0.03026.4040.0010.0010.0000.0000.0000.000
78A105GLN0-0.057-0.03927.7480.0110.0110.0000.0000.0000.000
79A106TYR00.0480.02024.3400.0030.0030.0000.0000.0000.000
80A107MET00.0090.01121.5450.0020.0020.0000.0000.0000.000
81A108ARG10.7810.88325.9080.1400.1400.0000.0000.0000.000
82A109SER0-0.070-0.07828.9530.0080.0080.0000.0000.0000.000
83A110GLY00.0890.06828.5940.0060.0060.0000.0000.0000.000
84A111ARG10.8650.92829.5580.0930.0930.0000.0000.0000.000
85A112ASP-1-0.840-0.93329.194-0.142-0.1420.0000.0000.0000.000
86A113GLY00.0250.01230.958-0.007-0.0070.0000.0000.0000.000
87A114ASP-1-0.852-0.92930.620-0.126-0.1260.0000.0000.0000.000
88A115LEU0-0.035-0.00224.493-0.012-0.0120.0000.0000.0000.000
89A116ALA00.0150.00428.178-0.012-0.0120.0000.0000.0000.000
90A118ALA00.0240.00527.216-0.004-0.0040.0000.0000.0000.000
91A119LEU00.0270.01123.581-0.013-0.0130.0000.0000.0000.000
92A120ASN00.0050.00327.396-0.010-0.0100.0000.0000.0000.000
93A121TRP0-0.032-0.02530.338-0.003-0.0030.0000.0000.0000.000
94A122MET0-0.021-0.02024.123-0.008-0.0080.0000.0000.0000.000
95A123SER00.009-0.00926.783-0.002-0.0020.0000.0000.0000.000
96A124ALA0-0.0100.00527.7630.0030.0030.0000.0000.0000.000
97A125TRP0-0.012-0.02529.1240.0000.0000.0000.0000.0000.000
98A126ALA0-0.027-0.00825.4010.0010.0010.0000.0000.0000.000
99A127ARG10.9580.98627.2300.1750.1750.0000.0000.0000.000
100A128ALA0-0.058-0.01929.4380.0070.0070.0000.0000.0000.000
101A129GLY00.0110.01828.4390.0050.0050.0000.0000.0000.000
102A130ALA0-0.028-0.01129.5210.0060.0060.0000.0000.0000.000
103A131LEU0-0.025-0.03128.373-0.016-0.0160.0000.0000.0000.000
104A132GLN00.0830.03026.835-0.024-0.0240.0000.0000.0000.000
105A133SER00.0140.02629.3220.0020.0020.0000.0000.0000.000
106A134ASP-1-0.848-0.92630.179-0.181-0.1810.0000.0000.0000.000
107A135ASP-1-0.878-0.89932.507-0.107-0.1070.0000.0000.0000.000
108A136PHE0-0.003-0.01830.131-0.003-0.0030.0000.0000.0000.000
109A137ASN00.0330.01034.940-0.001-0.0010.0000.0000.0000.000
110A138HIS00.0400.00832.485-0.005-0.0050.0000.0000.0000.000
111A139THR0-0.004-0.01233.001-0.009-0.0090.0000.0000.0000.000
112A140GLY00.0540.02933.773-0.006-0.0060.0000.0000.0000.000
113A141LYS10.8850.93629.1420.1590.1590.0000.0000.0000.000
114A142SER0-0.083-0.05228.786-0.018-0.0180.0000.0000.0000.000
115A143MET0-0.0120.00229.460-0.008-0.0080.0000.0000.0000.000
116A144ARG10.7780.88225.8680.2010.2010.0000.0000.0000.000
117A145LYS10.8450.93924.5160.1860.1860.0000.0000.0000.000
118A146TRP0-0.045-0.02724.841-0.013-0.0130.0000.0000.0000.000
119A147ALA00.0280.02126.264-0.009-0.0090.0000.0000.0000.000
120A148LEU00.0280.02420.474-0.002-0.0020.0000.0000.0000.000
121A149GLY00.0500.03621.500-0.030-0.0300.0000.0000.0000.000
122A150SER0-0.066-0.05322.260-0.010-0.0100.0000.0000.0000.000
123A151LEU0-0.035-0.01924.059-0.001-0.0010.0000.0000.0000.000
124A152SER00.0120.00118.650-0.016-0.0160.0000.0000.0000.000
125A153GLY00.0620.03719.012-0.031-0.0310.0000.0000.0000.000
126A154ALA0-0.046-0.03220.0650.0050.0050.0000.0000.0000.000
127A155TYR0-0.036-0.04817.5680.0270.0270.0000.0000.0000.000
128A156MET0-0.0110.02614.346-0.037-0.0370.0000.0000.0000.000
129A157ARG10.8720.91816.4340.2080.2080.0000.0000.0000.000
130A158LEU0-0.008-0.00518.6840.0150.0150.0000.0000.0000.000
131A159LYS10.7970.88813.1390.6900.6900.0000.0000.0000.000
132A160PHE00.024-0.0129.6080.0110.0110.0000.0000.0000.000
133A161SER0-0.0100.01114.7010.0360.0360.0000.0000.0000.000
134A162SER0-0.001-0.02617.0490.0020.0020.0000.0000.0000.000
135A163SER0-0.0200.00017.9540.0150.0150.0000.0000.0000.000
136A164ARG10.8910.95215.5480.3430.3430.0000.0000.0000.000
137A165PRO00.0680.04719.4960.0120.0120.0000.0000.0000.000
138A166LEU0-0.022-0.02318.2740.0120.0120.0000.0000.0000.000
139A167ALA0-0.034-0.00120.629-0.004-0.0040.0000.0000.0000.000
140A168ALA00.0010.00721.5010.0070.0070.0000.0000.0000.000
141A169HIS10.8710.93423.4140.1920.1920.0000.0000.0000.000
142A170ALA00.0730.05221.289-0.020-0.0200.0000.0000.0000.000
143A171GLU-1-0.902-0.94521.839-0.192-0.1920.0000.0000.0000.000
144A172GLN00.017-0.01024.101-0.016-0.0160.0000.0000.0000.000
145A173SER0-0.007-0.02219.561-0.012-0.0120.0000.0000.0000.000
146A174ARG10.8260.89816.0660.4400.4400.0000.0000.0000.000
147A175GLU-1-0.860-0.93820.580-0.251-0.2510.0000.0000.0000.000
148A176ILE0-0.032-0.02421.261-0.004-0.0040.0000.0000.0000.000
149A177GLU-1-0.787-0.85315.901-0.585-0.5850.0000.0000.0000.000
150A178ASP-1-0.814-0.89518.695-0.445-0.4450.0000.0000.0000.000
151A179TRP0-0.072-0.02820.1010.0000.0000.0000.0000.0000.000
152A180PHE00.016-0.00919.0280.0080.0080.0000.0000.0000.000
153A181ALA00.0540.03516.953-0.009-0.0090.0000.0000.0000.000
154A182ARG10.8280.92218.3640.2740.2740.0000.0000.0000.000
155A183LEU0-0.002-0.00221.6470.0160.0160.0000.0000.0000.000
156A184GLY00.0080.00218.7610.0170.0170.0000.0000.0000.000
157A185THR00.009-0.01118.879-0.006-0.0060.0000.0000.0000.000
158A186GLN00.0040.00320.0340.0170.0170.0000.0000.0000.000
159A187VAL0-0.009-0.00321.6900.0250.0250.0000.0000.0000.000
160A188VAL00.0360.01917.8840.0210.0210.0000.0000.0000.000
161A189ARG10.9240.97721.2900.2650.2650.0000.0000.0000.000
162A190ASP-1-0.821-0.87724.309-0.195-0.1950.0000.0000.0000.000
163A191TRP0-0.047-0.03424.1740.0350.0350.0000.0000.0000.000
164A192SER00.0480.02222.525-0.002-0.0020.0000.0000.0000.000
165A193GLY0-0.003-0.00224.6900.0120.0120.0000.0000.0000.000
166A194LEU0-0.064-0.01727.0420.0160.0160.0000.0000.0000.000
167A195PRO00.0370.02028.1970.0000.0000.0000.0000.0000.000
168A196LEU00.1490.05327.661-0.004-0.0040.0000.0000.0000.000
169A197LYS10.9050.96030.5180.0680.0680.0000.0000.0000.000
170A198LYS10.9030.94331.8790.1040.1040.0000.0000.0000.000
171A199ILE00.0400.04825.854-0.005-0.0050.0000.0000.0000.000
172A200ASN00.003-0.01029.1240.0030.0030.0000.0000.0000.000
173A201ASN0-0.002-0.01427.920-0.020-0.0200.0000.0000.0000.000
174A202ALA0-0.058-0.01727.317-0.015-0.0150.0000.0000.0000.000
175A203SER00.0670.02924.868-0.010-0.0100.0000.0000.0000.000
176A204TYR00.0470.01023.154-0.021-0.0210.0000.0000.0000.000
177A205TRP0-0.006-0.01722.412-0.032-0.0320.0000.0000.0000.000
178A206ALA0-0.043-0.01222.831-0.021-0.0210.0000.0000.0000.000
179A207ALA00.0690.03119.142-0.033-0.0330.0000.0000.0000.000
180A208TRP0-0.0110.00016.846-0.056-0.0560.0000.0000.0000.000
181A209SER0-0.023-0.03918.254-0.044-0.0440.0000.0000.0000.000
182A210VAL0-0.0290.00015.937-0.035-0.0350.0000.0000.0000.000
183A211MET00.0140.02511.936-0.123-0.1230.0000.0000.0000.000
184A212SER0-0.013-0.02313.726-0.114-0.1140.0000.0000.0000.000
185A213THR00.000-0.03015.084-0.043-0.0430.0000.0000.0000.000
186A214ALA0-0.0380.00711.302-0.047-0.0470.0000.0000.0000.000
187A215VAL00.0170.0139.767-0.191-0.1910.0000.0000.0000.000
188A216VAL0-0.045-0.02111.232-0.046-0.0460.0000.0000.0000.000
189A217THR0-0.075-0.07713.2270.0010.0010.0000.0000.0000.000
190A218ASN0-0.033-0.0086.257-0.505-0.5050.0000.0000.0000.000
191A219ARG10.8170.8848.8400.5920.5920.0000.0000.0000.000
192A220ARG11.0080.9793.1634.1834.6880.018-0.192-0.331-0.001
193A221ASP-1-0.751-0.8298.651-0.603-0.6030.0000.0000.0000.000
194A222LEU0-0.040-0.02212.1280.1130.1130.0000.0000.0000.000
195A223PHE00.001-0.0088.7890.0320.0320.0000.0000.0000.000
196A224ASP-1-0.881-0.9519.771-0.783-0.7830.0000.0000.0000.000
197A225TRP00.0070.01112.2400.1040.1040.0000.0000.0000.000
198A226ALA00.0160.01214.6610.0690.0690.0000.0000.0000.000
199A227VAL00.0330.01711.7270.0740.0740.0000.0000.0000.000
200A228SER0-0.083-0.04715.0870.0770.0770.0000.0000.0000.000
201A229GLU-1-0.879-0.95817.521-0.188-0.1880.0000.0000.0000.000
202A230PHE0-0.035-0.01417.6620.0320.0320.0000.0000.0000.000
203A231LYS10.8420.90915.8390.1920.1920.0000.0000.0000.000
204A232VAL0-0.0100.00920.4480.0310.0310.0000.0000.0000.000
205A233ALA0-0.001-0.00423.0860.0190.0190.0000.0000.0000.000
206A234ALA0-0.009-0.00122.0800.0160.0160.0000.0000.0000.000
207A235ASN0-0.043-0.04223.3130.0290.0290.0000.0000.0000.000
208A236GLN0-0.048-0.00226.3840.0000.0000.0000.0000.0000.000
209A237VAL0-0.063-0.00827.0080.0050.0050.0000.0000.0000.000
210A238ASP-1-0.715-0.84529.458-0.056-0.0560.0000.0000.0000.000
211A239GLU-1-0.870-0.94732.060-0.049-0.0490.0000.0000.0000.000
212A240GLN00.0090.00833.8650.0010.0010.0000.0000.0000.000
213A241GLY00.0170.01431.3940.0000.0000.0000.0000.0000.000
214A242PHE00.001-0.02132.244-0.007-0.0070.0000.0000.0000.000
215A243LEU00.0300.01928.347-0.002-0.0020.0000.0000.0000.000
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