FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: N22KQ

Calculation Name: 4Z32-A-Xray372

Preferred Name: Tyrosine-protein kinase JAK2

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 4Z32

Chain ID: A

ChEMBL ID: CHEMBL2971

UniProt ID: O60674

Base Structure: X-ray

Registration Date: 2023-09-27

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 445
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -8473329.154515
FMO2-HF: Nuclear repulsion 8290301.754968
FMO2-HF: Total energy -183027.399546
FMO2-MP2: Total energy -183556.480564


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:37:PRO)


Summations of interaction energy for fragment #1(A:37:PRO)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-19.768-9.0268.837-8.162-11.415-0.052
Interaction energy analysis for fragmet #1(A:37:PRO)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.061 / q_NPA : -0.012
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A39LEU00.0400.0263.829-2.4900.301-0.034-1.552-1.2050.004
4A40GLN0-0.046-0.0187.1750.3750.3750.0000.0000.0000.000
5A41VAL00.008-0.0139.879-0.085-0.0850.0000.0000.0000.000
6A42TYR0-0.018-0.00613.4190.0130.0130.0000.0000.0000.000
7A43LEU00.006-0.00316.329-0.057-0.0570.0000.0000.0000.000
8A44TYR00.0250.00219.5590.0120.0120.0000.0000.0000.000
9A45HIS0-0.085-0.05522.643-0.009-0.0090.0000.0000.0000.000
10A46SER00.0290.02421.271-0.013-0.0130.0000.0000.0000.000
11A47LEU0-0.001-0.01723.336-0.002-0.0020.0000.0000.0000.000
12A48GLY0-0.033-0.00923.305-0.002-0.0020.0000.0000.0000.000
13A49LYS10.9290.94817.975-0.324-0.3240.0000.0000.0000.000
14A50SER0-0.068-0.01724.457-0.007-0.0070.0000.0000.0000.000
15A51GLU-1-0.932-0.96724.2130.2000.2000.0000.0000.0000.000
16A52ALA0-0.046-0.02021.443-0.008-0.0080.0000.0000.0000.000
17A53ASP-1-0.831-0.90217.8500.3520.3520.0000.0000.0000.000
18A54TYR0-0.058-0.04813.1520.0090.0090.0000.0000.0000.000
19A55LEU0-0.0230.00213.8370.0010.0010.0000.0000.0000.000
20A56THR00.005-0.0087.6980.0460.0460.0000.0000.0000.000
21A57PHE0-0.0010.0048.410-0.018-0.0180.0000.0000.0000.000
22A58PRO00.0400.0204.911-0.030-0.0300.0000.0000.0000.000
23A59SER0-0.022-0.0092.448-1.231-0.2530.493-0.357-1.113-0.001
24A60GLY00.0360.0143.8010.2380.4800.011-0.066-0.1860.000
25A61GLU-1-0.906-0.9526.909-0.632-0.6320.0000.0000.0000.000
26A62TYR0-0.041-0.0336.5170.2220.2220.0000.0000.0000.000
27A63VAL00.0070.01111.5970.0120.0120.0000.0000.0000.000
28A64ALA00.000-0.01715.0710.0290.0290.0000.0000.0000.000
29A65GLU-1-0.831-0.92716.294-0.067-0.0670.0000.0000.0000.000
30A66GLU-1-0.830-0.91913.738-0.241-0.2410.0000.0000.0000.000
31A67ILE00.0130.01311.3290.0340.0340.0000.0000.0000.000
32A68CYS0-0.069-0.04015.4310.0490.0490.0000.0000.0000.000
33A69ILE0-0.016-0.00418.9950.0240.0240.0000.0000.0000.000
34A70ALA0-0.0100.00216.1890.0170.0170.0000.0000.0000.000
35A71ALA00.0430.01517.7470.0260.0260.0000.0000.0000.000
36A72SER0-0.033-0.01519.2010.0110.0110.0000.0000.0000.000
37A73LYS10.8810.94020.8810.0360.0360.0000.0000.0000.000
38A74ALA00.0070.02419.7480.0050.0050.0000.0000.0000.000
39A75CYS0-0.064-0.03721.6100.0200.0200.0000.0000.0000.000
40A76GLY00.0180.01824.2820.0000.0000.0000.0000.0000.000
41A77ILE0-0.073-0.02725.499-0.005-0.0050.0000.0000.0000.000
42A78THR00.0550.01326.579-0.007-0.0070.0000.0000.0000.000
43A79PRO0-0.012-0.01827.5730.0000.0000.0000.0000.0000.000
44A80VAL0-0.056-0.02528.732-0.004-0.0040.0000.0000.0000.000
45A81TYR0-0.025-0.01830.142-0.003-0.0030.0000.0000.0000.000
46A82HIS0-0.013-0.00421.861-0.006-0.0060.0000.0000.0000.000
47A83ASN00.0480.01425.8340.0060.0060.0000.0000.0000.000
48A84MET0-0.0090.01327.733-0.002-0.0020.0000.0000.0000.000
49A85PHE0-0.048-0.03023.2110.0090.0090.0000.0000.0000.000
50A86ALA00.0100.01521.640-0.014-0.0140.0000.0000.0000.000
51A87LEU00.0210.01715.0120.0220.0220.0000.0000.0000.000
52A88MET0-0.042-0.00618.009-0.012-0.0120.0000.0000.0000.000
53A89SER00.0610.02814.7350.0350.0350.0000.0000.0000.000
54A90GLU-1-0.853-0.92313.8910.4510.4510.0000.0000.0000.000
55A91THR0-0.039-0.02413.917-0.003-0.0030.0000.0000.0000.000
56A92GLU-1-0.924-0.96816.173-0.009-0.0090.0000.0000.0000.000
57A93ARG10.8080.89418.265-0.140-0.1400.0000.0000.0000.000
58A94ILE00.0120.01018.878-0.013-0.0130.0000.0000.0000.000
59A95TRP0-0.039-0.02018.7930.0060.0060.0000.0000.0000.000
60A96TYR0-0.021-0.03412.971-0.015-0.0150.0000.0000.0000.000
61A97PRO0-0.0140.00819.0980.0110.0110.0000.0000.0000.000
62A98PRO00.006-0.01719.585-0.011-0.0110.0000.0000.0000.000
63A99ASN0-0.008-0.02619.618-0.008-0.0080.0000.0000.0000.000
64A100HIS0-0.021-0.00613.350-0.016-0.0160.0000.0000.0000.000
65A101VAL00.0280.02312.3610.0180.0180.0000.0000.0000.000
66A102PHE0-0.081-0.0459.3140.0320.0320.0000.0000.0000.000
67A103HIS00.0640.0318.265-0.071-0.0710.0000.0000.0000.000
68A104ILE0-0.077-0.0132.140-0.488-0.5291.814-0.486-1.2870.000
69A105ASP-1-0.770-0.8873.940-2.190-1.8280.013-0.177-0.198-0.001
70A106GLU-1-0.902-0.9722.517-5.844-4.0851.219-1.261-1.717-0.016
71A107SER0-0.053-0.0232.485-5.781-2.9861.701-1.777-2.719-0.018
72A108THR0-0.074-0.0282.9471.7912.8350.197-0.312-0.929-0.002
73A109ARG10.9750.9942.333-2.950-2.2173.424-2.158-1.998-0.018
74A110HIS0-0.0160.0124.370-0.379-0.300-0.001-0.016-0.0630.000
75A111ASN0-0.006-0.0087.4320.1650.1650.0000.0000.0000.000
76A112VAL00.010-0.00410.572-0.097-0.0970.0000.0000.0000.000
77A113LEU0-0.019-0.00213.4430.0440.0440.0000.0000.0000.000
78A114TYR00.0710.04917.031-0.038-0.0380.0000.0000.0000.000
79A115ARG10.8280.90119.161-0.082-0.0820.0000.0000.0000.000
80A116ILE0-0.0020.00022.643-0.014-0.0140.0000.0000.0000.000
81A117ARG10.7280.84324.4140.0130.0130.0000.0000.0000.000
82A118PHE0-0.053-0.00826.325-0.001-0.0010.0000.0000.0000.000
83A119TYR0-0.046-0.05730.1840.0050.0050.0000.0000.0000.000
84A120PHE00.0440.00632.933-0.003-0.0030.0000.0000.0000.000
85A121PRO0-0.0010.00136.7020.0020.0020.0000.0000.0000.000
86A122ARG0-0.034-0.02838.799-0.004-0.0040.0000.0000.0000.000
87A123TRP00.0030.00836.596-0.002-0.0020.0000.0000.0000.000
88A124TYR0-0.085-0.05839.582-0.001-0.0010.0000.0000.0000.000
89A125CYS0-0.074-0.02342.027-0.001-0.0010.0000.0000.0000.000
90A126SER00.0180.00445.3880.0000.0000.0000.0000.0000.000
91A127GLY00.0770.03647.469-0.002-0.0020.0000.0000.0000.000
92A128SER0-0.015-0.02445.695-0.002-0.0020.0000.0000.0000.000
93A129ASN00.0550.02246.5950.0000.0000.0000.0000.0000.000
94A130ARG10.8790.97844.860-0.017-0.0170.0000.0000.0000.000
95A131ALA00.0280.01140.376-0.002-0.0020.0000.0000.0000.000
96A132TYR0-0.0070.00941.4460.0020.0020.0000.0000.0000.000
97A133ARG10.8440.93733.033-0.007-0.0070.0000.0000.0000.000
98A134HIS00.0440.02440.5440.0010.0010.0000.0000.0000.000
99A135GLY0-0.026-0.03042.919-0.002-0.0020.0000.0000.0000.000
100A136ILE00.0180.00443.6710.0010.0010.0000.0000.0000.000
101A137SER0-0.073-0.02246.9640.0010.0010.0000.0000.0000.000
102A138ARG10.9030.92146.851-0.004-0.0040.0000.0000.0000.000
103A139GLY0-0.0220.00350.0000.0000.0000.0000.0000.0000.000
104A140ALA0-0.002-0.00348.8530.0010.0010.0000.0000.0000.000
105A141GLU-1-0.895-0.93945.8100.0100.0100.0000.0000.0000.000
106A142ALA0-0.022-0.01341.5520.0010.0010.0000.0000.0000.000
107A143PRO00.0160.01139.470-0.001-0.0010.0000.0000.0000.000
108A144LEU00.0340.00335.569-0.001-0.0010.0000.0000.0000.000
109A145LEU00.0040.00632.872-0.001-0.0010.0000.0000.0000.000
110A146ASP-1-0.812-0.90832.6890.0360.0360.0000.0000.0000.000
111A147ASP-1-0.804-0.89834.9570.0460.0460.0000.0000.0000.000
112A148PHE00.0190.00929.4770.0060.0060.0000.0000.0000.000
113A149VAL00.0270.01429.4620.0080.0080.0000.0000.0000.000
114A150MET0-0.0200.03230.2390.0050.0050.0000.0000.0000.000
115A151SER0-0.049-0.03830.4370.0050.0050.0000.0000.0000.000
116A152TYR00.017-0.00821.3590.0140.0140.0000.0000.0000.000
117A153LEU00.0120.01027.4640.0070.0070.0000.0000.0000.000
118A154PHE0-0.045-0.02929.7440.0050.0050.0000.0000.0000.000
119A155ALA0-0.0040.00426.4380.0030.0030.0000.0000.0000.000
120A156GLN00.0360.03324.4550.0100.0100.0000.0000.0000.000
121A157TRP0-0.006-0.01926.3300.0050.0050.0000.0000.0000.000
122A158ARG10.8870.93529.229-0.123-0.1230.0000.0000.0000.000
123A159HIS0-0.027-0.00722.3120.0180.0180.0000.0000.0000.000
124A160ASP-1-0.742-0.86224.6380.1270.1270.0000.0000.0000.000
125A161PHE00.0420.02627.302-0.004-0.0040.0000.0000.0000.000
126A162VAL0-0.032-0.01329.991-0.001-0.0010.0000.0000.0000.000
127A163HIS0-0.016-0.01925.547-0.004-0.0040.0000.0000.0000.000
128A164GLY0-0.0100.00627.4350.0050.0050.0000.0000.0000.000
129A165TRP00.0030.00920.604-0.010-0.0100.0000.0000.0000.000
130A166ILE00.0090.02126.657-0.007-0.0070.0000.0000.0000.000
131A167LYS10.8640.93028.857-0.096-0.0960.0000.0000.0000.000
132A168VAL00.0750.03432.710-0.005-0.0050.0000.0000.0000.000
133A169PRO00.0440.03036.3300.0020.0020.0000.0000.0000.000
134A170VAL00.0290.02238.6060.0020.0020.0000.0000.0000.000
135A171THR00.0210.00541.046-0.003-0.0030.0000.0000.0000.000
136A172HIS00.042-0.01044.2830.0030.0030.0000.0000.0000.000
137A173GLU-1-0.842-0.91646.6110.0390.0390.0000.0000.0000.000
138A174THR00.026-0.00340.8620.0000.0000.0000.0000.0000.000
139A175GLN0-0.0120.01342.0060.0040.0040.0000.0000.0000.000
140A176GLU-1-0.775-0.86243.3960.0530.0530.0000.0000.0000.000
141A177GLU-1-0.810-0.87141.8010.0480.0480.0000.0000.0000.000
142A178CYS0-0.054-0.03939.0730.0040.0040.0000.0000.0000.000
143A179LEU0-0.066-0.03140.2750.0050.0050.0000.0000.0000.000
144A180GLY00.0620.03342.9360.0020.0020.0000.0000.0000.000
145A181MET00.0000.00835.9020.0000.0000.0000.0000.0000.000
146A182ALA00.0170.00338.6040.0040.0040.0000.0000.0000.000
147A183VAL0-0.044-0.01539.6450.0030.0030.0000.0000.0000.000
148A184LEU00.009-0.00140.0850.0010.0010.0000.0000.0000.000
149A185ASP-1-0.751-0.87234.5840.1020.1020.0000.0000.0000.000
150A186MET0-0.0460.00837.3390.0020.0020.0000.0000.0000.000
151A187MET0-0.040-0.02739.557-0.001-0.0010.0000.0000.0000.000
152A188ARG10.7660.85032.267-0.107-0.1070.0000.0000.0000.000
153A189ILE0-0.0070.00634.3860.0020.0020.0000.0000.0000.000
154A190ALA0-0.020-0.00937.0970.0010.0010.0000.0000.0000.000
155A191LYS10.8210.90539.979-0.062-0.0620.0000.0000.0000.000
156A192GLU-1-0.746-0.84233.7220.1020.1020.0000.0000.0000.000
157A193ASN0-0.0180.00634.0340.0040.0040.0000.0000.0000.000
158A194ASP-1-0.858-0.93437.8610.0720.0720.0000.0000.0000.000
159A195GLN0-0.0330.00339.540-0.003-0.0030.0000.0000.0000.000
160A196THR0-0.026-0.02342.940-0.004-0.0040.0000.0000.0000.000
161A197PRO00.010-0.02243.6420.0030.0030.0000.0000.0000.000
162A198LEU0-0.019-0.01144.3370.0020.0020.0000.0000.0000.000
163A199ALA00.0430.03544.3870.0010.0010.0000.0000.0000.000
164A200ILE00.0790.04638.4350.0030.0030.0000.0000.0000.000
165A201TYR0-0.042-0.04641.1440.0020.0020.0000.0000.0000.000
166A202ASN0-0.071-0.04943.3910.0000.0000.0000.0000.0000.000
167A203SER00.0000.01739.7690.0010.0010.0000.0000.0000.000
168A204ILE0-0.006-0.00235.9340.0060.0060.0000.0000.0000.000
169A205SER0-0.0180.00838.907-0.007-0.0070.0000.0000.0000.000
170A206TYR00.0820.02138.5780.0040.0040.0000.0000.0000.000
171A207LYS10.8510.91638.692-0.076-0.0760.0000.0000.0000.000
172A208THR0-0.020-0.01633.1510.0020.0020.0000.0000.0000.000
173A209PHE00.0080.00333.6830.0050.0050.0000.0000.0000.000
174A210LEU0-0.0280.00235.625-0.005-0.0050.0000.0000.0000.000
175A211PRO00.0480.03633.1850.0060.0060.0000.0000.0000.000
176A212LYS10.8730.91526.830-0.159-0.1590.0000.0000.0000.000
177A213CYS0-0.0020.01533.804-0.001-0.0010.0000.0000.0000.000
178A214ILE00.0800.03036.420-0.004-0.0040.0000.0000.0000.000
179A215ARG10.9260.96233.995-0.113-0.1130.0000.0000.0000.000
180A216ALA0-0.007-0.00237.451-0.001-0.0010.0000.0000.0000.000
181A217LYS10.9030.96739.375-0.055-0.0550.0000.0000.0000.000
182A218ILE0-0.043-0.02441.869-0.003-0.0030.0000.0000.0000.000
183A219GLN0-0.018-0.02439.372-0.004-0.0040.0000.0000.0000.000
184A220ASP-1-0.843-0.90243.1580.0640.0640.0000.0000.0000.000
185A221TYR0-0.101-0.04745.283-0.004-0.0040.0000.0000.0000.000
186A222HIS00.1240.05348.4050.0030.0030.0000.0000.0000.000
187A223ILE00.0340.00550.0000.0010.0010.0000.0000.0000.000
188A224LEU00.040-0.00151.0540.0010.0010.0000.0000.0000.000
189A225THR0-0.011-0.00250.237-0.001-0.0010.0000.0000.0000.000
190A226ARG10.9040.96245.612-0.062-0.0620.0000.0000.0000.000
191A227LYS10.9350.97048.496-0.051-0.0510.0000.0000.0000.000
192A228ARG10.9770.98850.962-0.042-0.0420.0000.0000.0000.000
193A229ILE00.0160.02045.963-0.001-0.0010.0000.0000.0000.000
194A230ARG10.9700.99346.064-0.068-0.0680.0000.0000.0000.000
195A231TYR00.0410.01348.0820.0000.0000.0000.0000.0000.000
196A232ARG10.8150.86748.771-0.049-0.0490.0000.0000.0000.000
197A233PHE0-0.004-0.00142.023-0.001-0.0010.0000.0000.0000.000
198A234ARG10.9050.94847.734-0.056-0.0560.0000.0000.0000.000
199A235ARG10.9230.96449.183-0.044-0.0440.0000.0000.0000.000
200A236PHE00.0390.02847.475-0.001-0.0010.0000.0000.0000.000
201A237ILE00.0080.00243.912-0.001-0.0010.0000.0000.0000.000
202A238GLN00.0230.00747.9250.0010.0010.0000.0000.0000.000
203A239GLN0-0.0100.01751.3950.0000.0000.0000.0000.0000.000
204A240PHE00.0050.00447.972-0.002-0.0020.0000.0000.0000.000
205A241SER0-0.019-0.01748.7190.0010.0010.0000.0000.0000.000
206A242GLN00.0270.01849.5490.0000.0000.0000.0000.0000.000
207A243CYS0-0.071-0.02047.394-0.002-0.0020.0000.0000.0000.000
208A244LYS11.0480.99748.159-0.036-0.0360.0000.0000.0000.000
209A245ALA0-0.0430.00244.9520.0000.0000.0000.0000.0000.000
210A246THR00.0940.02941.5750.0040.0040.0000.0000.0000.000
211A247ALA00.0870.03037.198-0.001-0.0010.0000.0000.0000.000
212A248ARG10.8560.88735.673-0.053-0.0530.0000.0000.0000.000
213A249ASN00.0350.03238.482-0.001-0.0010.0000.0000.0000.000
214A250LEU0-0.013-0.00339.787-0.002-0.0020.0000.0000.0000.000
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