FMODB ID: N3L1Q
Calculation Name: 1L2Y-A-MD57-66000ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-13
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -24762.677303 |
---|---|
FMO2-HF: Nuclear repulsion | 20160.430303 |
FMO2-HF: Total energy | -4602.247 |
FMO2-MP2: Total energy | -4615.692026 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-79.294 | -69.18 | 3.294 | -5.374 | -8.033 | -0.039 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.076 | 0.029 | 2.736 | -4.873 | -2.459 | 0.430 | -1.182 | -1.661 | -0.009 | |
4 | 4 | GLN | 0 | 0.046 | 0.044 | 5.524 | 4.649 | 4.649 | 0.000 | 0.000 | 0.000 | 0.000 | |
5 | 5 | GLN | 0 | -0.036 | -0.038 | 6.027 | -4.102 | -4.102 | 0.000 | 0.000 | 0.000 | 0.000 | |
6 | 6 | GLN | 0 | -0.058 | -0.019 | 2.352 | -5.623 | -4.639 | 0.989 | -0.547 | -1.427 | 0.002 | |
7 | 7 | GLN | 0 | 0.011 | 0.008 | 2.994 | -2.782 | -0.643 | 0.534 | -1.158 | -1.514 | -0.010 | |
8 | 8 | GLN | 0 | -0.014 | -0.029 | 2.493 | -34.713 | -30.250 | 1.339 | -2.483 | -3.319 | -0.022 | |
9 | 9 | GLN | 0 | -0.076 | -0.049 | 3.597 | -6.307 | -6.193 | 0.002 | -0.004 | -0.112 | 0.000 | |
10 | 10 | GLN | -1 | -0.859 | -0.899 | 6.713 | -25.543 | -25.543 | 0.000 | 0.000 | 0.000 | 0.000 |