FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: N65JQ

Calculation Name: 1WIN-A-Other549

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1WIN

Chain ID: A

ChEMBL ID:

UniProt ID: Q60634

Base Structure: SolutionNMR

Registration Date: 2025-10-11

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 143
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -1128783.602501
FMO2-HF: Nuclear repulsion 1074192.265583
FMO2-HF: Total energy -54591.336918
FMO2-MP2: Total energy -54749.104276


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:GLY)


Summations of interaction energy for fragment #1(A:1:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-39.117-38.363-0.004-0.31-0.440
Interaction energy analysis for fragmet #1(A:1:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.860 / q_NPA : 0.920
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3SER00.0200.0033.823-0.5160.238-0.004-0.310-0.4400.000
4A4GLY00.0510.0236.7151.4431.4430.0000.0000.0000.000
5A5SER0-0.034-0.02310.1850.5490.5490.0000.0000.0000.000
6A6SER0-0.0040.00413.504-0.065-0.0650.0000.0000.0000.000
7A7GLY00.0430.01317.1130.4990.4990.0000.0000.0000.000
8A8GLN0-0.035-0.00618.863-0.027-0.0270.0000.0000.0000.000
9A9ARG10.9650.98321.66512.17412.1740.0000.0000.0000.000
10A10ILE00.0380.02521.948-0.642-0.6420.0000.0000.0000.000
11A11SER0-0.015-0.01620.6300.2380.2380.0000.0000.0000.000
12A12LEU0-0.012-0.01222.640-0.235-0.2350.0000.0000.0000.000
13A13GLU-1-0.908-0.95623.304-11.866-11.8660.0000.0000.0000.000
14A14ILE0-0.0230.00123.410-0.434-0.4340.0000.0000.0000.000
15A15MET0-0.0190.00319.821-1.011-1.0110.0000.0000.0000.000
16A16THR0-0.0010.00318.4750.6750.6750.0000.0000.0000.000
17A17LEU0-0.041-0.02716.857-1.337-1.3370.0000.0000.0000.000
18A18GLN00.0300.00414.7911.3291.3290.0000.0000.0000.000
19A19PRO00.0000.01215.923-1.187-1.1870.0000.0000.0000.000
20A20ARG10.9580.9869.83626.61426.6140.0000.0000.0000.000
21A21CYS0-0.060-0.04316.549-0.493-0.4930.0000.0000.0000.000
22A22GLU-1-0.949-0.99213.066-22.314-22.3140.0000.0000.0000.000
23A23ASP-1-0.945-0.96817.718-14.868-14.8680.0000.0000.0000.000
24A24VAL0-0.039-0.01720.3640.4790.4790.0000.0000.0000.000
25A25GLU-1-0.945-0.97422.977-11.234-11.2340.0000.0000.0000.000
26A26THR0-0.028-0.01926.5350.0650.0650.0000.0000.0000.000
27A27ALA0-0.006-0.00729.0340.1310.1310.0000.0000.0000.000
28A28GLU-1-0.921-0.96931.894-9.611-9.6110.0000.0000.0000.000
29A29GLY0-0.0320.00030.4770.1990.1990.0000.0000.0000.000
30A30VAL00.0170.00227.420-0.072-0.0720.0000.0000.0000.000
31A31ALA00.0120.02323.001-0.188-0.1880.0000.0000.0000.000
32A32LEU0-0.004-0.00823.532-0.228-0.2280.0000.0000.0000.000
33A33THR0-0.073-0.04217.107-0.894-0.8940.0000.0000.0000.000
34A34VAL00.0220.02419.8550.4270.4270.0000.0000.0000.000
35A35THR0-0.080-0.04816.043-1.202-1.2020.0000.0000.0000.000
36A36GLY00.0570.02417.887-0.375-0.3750.0000.0000.0000.000
37A37VAL0-0.062-0.04818.766-1.096-1.0960.0000.0000.0000.000
38A38ALA00.0240.02820.4700.8090.8090.0000.0000.0000.000
39A39GLN0-0.057-0.03321.176-0.235-0.2350.0000.0000.0000.000
40A40VAL00.0290.01021.9320.5900.5900.0000.0000.0000.000
41A41LYS10.9780.98224.0809.9599.9590.0000.0000.0000.000
42A42ILE00.0280.01523.9690.0950.0950.0000.0000.0000.000
43A43MET0-0.0250.01027.5670.3650.3650.0000.0000.0000.000
44A44THR0-0.054-0.04631.314-0.132-0.1320.0000.0000.0000.000
45A45GLU-1-0.871-0.93034.127-8.365-8.3650.0000.0000.0000.000
46A46LYS10.8790.93637.0547.5637.5630.0000.0000.0000.000
47A47GLU-1-0.917-0.94340.340-7.332-7.3320.0000.0000.0000.000
48A48LEU00.023-0.00736.985-0.046-0.0460.0000.0000.0000.000
49A49LEU0-0.0040.01430.699-0.072-0.0720.0000.0000.0000.000
50A50ALA00.0460.00532.434-0.380-0.3800.0000.0000.0000.000
51A51VAL00.0160.01431.233-0.279-0.2790.0000.0000.0000.000
52A52ALA00.0670.03527.858-0.299-0.2990.0000.0000.0000.000
53A53CYS0-0.100-0.05127.624-0.421-0.4210.0000.0000.0000.000
54A54GLU-1-0.951-0.98028.402-10.175-10.1750.0000.0000.0000.000
55A55GLN0-0.0050.01725.290-0.425-0.4250.0000.0000.0000.000
56A56PHE0-0.029-0.04223.813-0.828-0.8280.0000.0000.0000.000
57A57LEU0-0.002-0.00423.748-0.567-0.5670.0000.0000.0000.000
58A58GLY0-0.018-0.00124.4490.0990.0990.0000.0000.0000.000
59A59LYS10.8700.96220.20214.96014.9600.0000.0000.0000.000
60A60ASN00.0200.01415.2881.1631.1630.0000.0000.0000.000
61A61VAL00.025-0.01215.490-0.055-0.0550.0000.0000.0000.000
62A62GLN0-0.019-0.00911.4671.0721.0720.0000.0000.0000.000
63A63ASP-1-0.801-0.91114.495-19.404-19.4040.0000.0000.0000.000
64A64ILE0-0.068-0.02516.9360.6330.6330.0000.0000.0000.000
65A65LYS10.9350.96914.84220.38120.3810.0000.0000.0000.000
66A66ASN0-0.006-0.00212.740-0.307-0.3070.0000.0000.0000.000
67A67VAL00.0530.03616.2200.3630.3630.0000.0000.0000.000
68A68VAL00.0180.01119.9590.5500.5500.0000.0000.0000.000
69A69LEU0-0.0160.00214.1870.3910.3910.0000.0000.0000.000
70A70GLN00.000-0.01317.4380.3040.3040.0000.0000.0000.000
71A71THR0-0.036-0.01119.4640.6600.6600.0000.0000.0000.000
72A72LEU0-0.015-0.01421.1670.5010.5010.0000.0000.0000.000
73A73GLU-1-0.898-0.94217.225-16.455-16.4550.0000.0000.0000.000
74A74GLY00.0300.02020.5580.3330.3330.0000.0000.0000.000
75A75HIS0-0.006-0.01122.8910.4190.4190.0000.0000.0000.000
76A76LEU0-0.016-0.01020.8660.4630.4630.0000.0000.0000.000
77A77ARG10.9860.98420.85114.49014.4900.0000.0000.0000.000
78A78SER0-0.054-0.01224.0880.4610.4610.0000.0000.0000.000
79A79ILE0-0.012-0.02227.6070.3630.3630.0000.0000.0000.000
80A80LEU0-0.026-0.01623.5150.2450.2450.0000.0000.0000.000
81A81GLY00.0570.03827.4930.2040.2040.0000.0000.0000.000
82A82THR0-0.078-0.04028.8880.4120.4120.0000.0000.0000.000
83A83LEU0-0.069-0.01930.2420.3880.3880.0000.0000.0000.000
84A84THR00.0390.00630.979-0.331-0.3310.0000.0000.0000.000
85A85VAL00.0170.00928.638-0.248-0.2480.0000.0000.0000.000
86A86GLU-1-0.861-0.93330.769-9.397-9.3970.0000.0000.0000.000
87A87GLN00.0470.01333.462-0.163-0.1630.0000.0000.0000.000
88A88ILE0-0.0220.00826.960-0.076-0.0760.0000.0000.0000.000
89A89TYR0-0.063-0.06425.220-0.067-0.0670.0000.0000.0000.000
90A90GLN0-0.086-0.03430.597-0.024-0.0240.0000.0000.0000.000
91A91ASP-1-0.881-0.93133.471-8.762-8.7620.0000.0000.0000.000
92A92ARG10.9450.96526.60311.05911.0590.0000.0000.0000.000
93A93ASP-1-0.936-0.96229.297-10.097-10.0970.0000.0000.0000.000
94A94GLN0-0.019-0.00831.3360.0760.0760.0000.0000.0000.000
95A95PHE00.0360.01325.124-0.058-0.0580.0000.0000.0000.000
96A96ALA00.0210.00126.971-0.203-0.2030.0000.0000.0000.000
97A97LYS10.9310.96528.1418.7918.7910.0000.0000.0000.000
98A98LEU00.0230.00331.0300.0470.0470.0000.0000.0000.000
99A99VAL00.0190.02824.8480.0150.0150.0000.0000.0000.000
100A100ARG10.8030.88027.9229.8879.8870.0000.0000.0000.000
101A101GLU-1-0.875-0.91929.074-9.073-9.0730.0000.0000.0000.000
102A102VAL0-0.0120.00229.2360.2080.2080.0000.0000.0000.000
103A103ALA00.0200.00626.866-0.026-0.0260.0000.0000.0000.000
104A104ALA0-0.0020.01028.883-0.100-0.1000.0000.0000.0000.000
105A105PRO0-0.013-0.00731.1300.0390.0390.0000.0000.0000.000
106A106ASP-1-0.834-0.89928.941-10.262-10.2620.0000.0000.0000.000
107A107VAL0-0.031-0.03125.989-0.134-0.1340.0000.0000.0000.000
108A108GLY00.0500.02428.645-0.038-0.0380.0000.0000.0000.000
109A109ARG10.7850.87730.88910.17710.1770.0000.0000.0000.000
110A110MET0-0.0210.00424.269-0.131-0.1310.0000.0000.0000.000
111A111GLY00.0230.02229.366-0.072-0.0720.0000.0000.0000.000
112A112ILE0-0.082-0.05324.950-0.234-0.2340.0000.0000.0000.000
113A113GLU-1-0.829-0.91928.220-9.789-9.7890.0000.0000.0000.000
114A114ILE0-0.056-0.02926.062-0.545-0.5450.0000.0000.0000.000
115A115LEU0-0.053-0.01626.2630.4100.4100.0000.0000.0000.000
116A116SER0-0.005-0.01426.9910.4120.4120.0000.0000.0000.000
117A117PHE00.0410.00123.187-0.601-0.6010.0000.0000.0000.000
118A118THR0-0.0110.00224.4970.4850.4850.0000.0000.0000.000
119A119ILE00.0320.01523.520-0.708-0.7080.0000.0000.0000.000
120A120LYS10.8930.96417.07017.71417.7140.0000.0000.0000.000
121A121ASP-1-0.880-0.96319.789-14.352-14.3520.0000.0000.0000.000
122A122VAL0-0.017-0.01420.997-0.471-0.4710.0000.0000.0000.000
123A123TYR0-0.0230.01916.268-0.089-0.0890.0000.0000.0000.000
124A124ASP-1-0.726-0.87321.693-12.837-12.8370.0000.0000.0000.000
125A125LYS10.8850.94215.98518.39518.3950.0000.0000.0000.000
126A126VAL00.0090.00520.541-0.254-0.2540.0000.0000.0000.000
127A127ASP-1-0.847-0.89623.729-11.673-11.6730.0000.0000.0000.000
128A128TYR00.0610.03625.5350.4810.4810.0000.0000.0000.000
129A129LEU0-0.017-0.02027.5360.4560.4560.0000.0000.0000.000
130A130SER0-0.129-0.06326.7890.5070.5070.0000.0000.0000.000
131A131SER0-0.012-0.03228.6830.4130.4130.0000.0000.0000.000
132A132LEU0-0.063-0.01830.8520.4020.4020.0000.0000.0000.000
133A133GLY0-0.0040.02532.5530.3090.3090.0000.0000.0000.000
134A134LYS10.9330.96433.8749.2069.2060.0000.0000.0000.000
135A135THR0-0.025-0.02736.2620.0290.0290.0000.0000.0000.000
136A136GLN0-0.041-0.01939.0750.0090.0090.0000.0000.0000.000
137A137THR00.0110.00942.5390.0550.0550.0000.0000.0000.000
138A138SER0-0.025-0.02345.1850.1100.1100.0000.0000.0000.000
139A139GLY00.0300.01548.969-0.083-0.0830.0000.0000.0000.000
140A140PRO0-0.041-0.01051.3280.0610.0610.0000.0000.0000.000
141A141SER00.0320.01254.717-0.080-0.0800.0000.0000.0000.000
142A142SER0-0.065-0.04656.9660.0360.0360.0000.0000.0000.000
143A143GLY-1-0.935-0.94359.598-5.314-5.3140.0000.0000.0000.000