FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: N6R6Q

Calculation Name: 2EVS-A-Xray549

Preferred Name:

Target Type:

Ligand Name: alpha-d-glucopyranose | decane | hexane

Ligand 3-letter code: GLC | D10 | HEX

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 2EVS

Chain ID: A

ChEMBL ID:

UniProt ID: Q9NZD2

Base Structure: X-ray

Registration Date: 2025-10-11

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 205
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2440126.378302
FMO2-HF: Nuclear repulsion 2358173.786738
FMO2-HF: Total energy -81952.591564
FMO2-MP2: Total energy -82191.80205


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:5:ALA)


Summations of interaction energy for fragment #1(A:5:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-2.6940.760999999999991.565-1.808-3.211-0.013
Interaction energy analysis for fragmet #1(A:5:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.771 / q_NPA : 0.848
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A7HIS00.0450.0312.4733.4626.1760.562-1.363-1.913-0.010
4A8LEU0-0.058-0.0232.5427.3498.1111.004-0.440-1.326-0.003
5A9LEU00.0110.0115.3840.4800.459-0.001-0.0050.0280.000
6A10LYS10.9010.9548.65522.47922.4790.0000.0000.0000.000
7A11PRO00.0230.02010.6860.8400.8400.0000.0000.0000.000
8A12LEU0-0.004-0.00813.1080.2880.2880.0000.0000.0000.000
9A13PRO0-0.0040.01616.6860.0990.0990.0000.0000.0000.000
10A14ALA00.026-0.00519.0230.4010.4010.0000.0000.0000.000
11A15ASP-1-0.852-0.92722.323-13.617-13.6170.0000.0000.0000.000
12A16LYS10.7980.88720.97813.08513.0850.0000.0000.0000.000
13A17GLN0-0.038-0.02321.550-0.199-0.1990.0000.0000.0000.000
14A18ILE0-0.012-0.00216.521-0.696-0.6960.0000.0000.0000.000
15A19GLU-1-0.841-0.92415.934-18.626-18.6260.0000.0000.0000.000
16A20THR0-0.011-0.02516.438-1.308-1.3080.0000.0000.0000.000
17A21GLY00.0160.01716.287-0.595-0.5950.0000.0000.0000.000
18A22PRO00.018-0.01411.900-0.954-0.9540.0000.0000.0000.000
19A23PHE00.0220.01911.764-2.102-2.1020.0000.0000.0000.000
20A24LEU0-0.010-0.01113.083-1.007-1.0070.0000.0000.0000.000
21A25GLU-1-0.941-0.9569.147-30.604-30.6040.0000.0000.0000.000
22A26ALA00.0390.0388.379-1.416-1.4160.0000.0000.0000.000
23A27VAL00.001-0.0259.291-0.786-0.7860.0000.0000.0000.000
24A28SER0-0.077-0.03711.4631.0581.0580.0000.0000.0000.000
25A29HIS0-0.005-0.0126.936-0.919-0.9190.0000.0000.0000.000
26A30LEU0-0.025-0.0058.656-0.358-0.3580.0000.0000.0000.000
27A31PRO0-0.012-0.00810.9470.9800.9800.0000.0000.0000.000
28A32PRO00.0290.00510.8031.4061.4060.0000.0000.0000.000
29A33PHE00.0060.0025.8031.2111.2110.0000.0000.0000.000
30A34PHE00.002-0.00611.8501.2151.2150.0000.0000.0000.000
31A35ASP-1-0.803-0.87215.137-16.459-16.4590.0000.0000.0000.000
32A36CYS0-0.089-0.02612.462-0.216-0.2160.0000.0000.0000.000
33A37LEU0-0.004-0.00115.0320.5200.5200.0000.0000.0000.000
34A38GLY00.0030.01618.1350.8890.8890.0000.0000.0000.000
35A39SER0-0.005-0.00720.1580.3630.3630.0000.0000.0000.000
36A40PRO00.0730.02522.315-0.353-0.3530.0000.0000.0000.000
37A41VAL0-0.018-0.00123.8620.0670.0670.0000.0000.0000.000
38A42PHE00.0170.00120.2610.0970.0970.0000.0000.0000.000
39A43THR0-0.028-0.02821.237-0.388-0.3880.0000.0000.0000.000
40A44PRO0-0.012-0.00122.609-0.248-0.2480.0000.0000.0000.000
41A45ILE00.0090.00919.654-0.043-0.0430.0000.0000.0000.000
42A46LYS10.8270.91216.42616.86416.8640.0000.0000.0000.000
43A47ALA00.0050.01319.203-0.564-0.5640.0000.0000.0000.000
44A48ASP-1-0.891-0.94421.996-12.865-12.8650.0000.0000.0000.000
45A49ILE00.0050.00916.205-0.087-0.0870.0000.0000.0000.000
46A50SER00.006-0.02018.105-0.699-0.6990.0000.0000.0000.000
47A51GLY00.0000.01619.055-0.050-0.0500.0000.0000.0000.000
48A52ASN0-0.021-0.01521.6860.7120.7120.0000.0000.0000.000
49A53ILE00.0290.00915.1950.1560.1560.0000.0000.0000.000
50A54THR0-0.021-0.02519.259-0.060-0.0600.0000.0000.0000.000
51A55LYS10.8810.94021.18412.23312.2330.0000.0000.0000.000
52A56ILE0-0.0020.00220.5350.3090.3090.0000.0000.0000.000
53A57LYS10.8530.90716.93118.08418.0840.0000.0000.0000.000
54A58ALA0-0.006-0.00121.0700.1550.1550.0000.0000.0000.000
55A59VAL00.0040.02224.4540.4480.4480.0000.0000.0000.000
56A60TYR00.0160.00518.3070.1680.1680.0000.0000.0000.000
57A61ASP-1-0.809-0.90820.025-16.217-16.2170.0000.0000.0000.000
58A62THR0-0.080-0.04022.7960.4470.4470.0000.0000.0000.000
59A63ASN0-0.013-0.01625.5000.2030.2030.0000.0000.0000.000
60A64PRO00.0340.01821.1300.0280.0280.0000.0000.0000.000
61A65ALA0-0.018-0.00123.016-0.335-0.3350.0000.0000.0000.000
62A66LYS10.9000.95925.48010.17110.1710.0000.0000.0000.000
63A67PHE00.0210.00724.3560.2030.2030.0000.0000.0000.000
64A68ARG10.9761.01120.37114.02714.0270.0000.0000.0000.000
65A69THR0-0.017-0.00520.504-0.906-0.9060.0000.0000.0000.000
66A70LEU00.0250.00018.7420.5430.5430.0000.0000.0000.000
67A71GLN00.000-0.03522.7070.2830.2830.0000.0000.0000.000
68A72ASN0-0.043-0.02825.1990.0410.0410.0000.0000.0000.000
69A73ILE0-0.0010.00022.9250.3640.3640.0000.0000.0000.000
70A74LEU0-0.014-0.00325.9980.4840.4840.0000.0000.0000.000
71A75GLU-1-0.845-0.90228.992-10.644-10.6440.0000.0000.0000.000
72A76VAL00.011-0.00130.0790.3920.3920.0000.0000.0000.000
73A77GLU-1-0.731-0.84929.135-10.998-10.9980.0000.0000.0000.000
74A78LYS10.8820.96132.3589.4039.4030.0000.0000.0000.000
75A79GLU-1-0.935-0.97534.618-8.983-8.9830.0000.0000.0000.000
76A80MET0-0.089-0.03533.2830.1270.1270.0000.0000.0000.000
77A81TYR00.0330.00733.2490.1020.1020.0000.0000.0000.000
78A82GLY00.0240.01337.380-0.016-0.0160.0000.0000.0000.000
79A83ALA0-0.047-0.01838.8270.0750.0750.0000.0000.0000.000
80A84GLU-1-0.952-0.97137.331-8.468-8.4680.0000.0000.0000.000
81A85TRP0-0.034-0.00131.190-0.041-0.0410.0000.0000.0000.000
82A86PRO00.0240.01031.6270.2280.2280.0000.0000.0000.000
83A87LYS10.8830.93831.8238.4538.4530.0000.0000.0000.000
84A88VAL00.0460.01532.4610.1240.1240.0000.0000.0000.000
85A89GLY00.0270.02130.132-0.289-0.2890.0000.0000.0000.000
86A90ALA0-0.015-0.02324.903-0.239-0.2390.0000.0000.0000.000
87A91THR00.009-0.01725.649-0.478-0.4780.0000.0000.0000.000
88A92LEU0-0.0130.01127.392-0.154-0.1540.0000.0000.0000.000
89A93ALA0-0.037-0.01824.374-0.149-0.1490.0000.0000.0000.000
90A94LEU00.0210.00220.646-0.524-0.5240.0000.0000.0000.000
91A95MET00.0020.02923.151-0.118-0.1180.0000.0000.0000.000
92A96TRP00.0040.00224.805-0.013-0.0130.0000.0000.0000.000
93A97LEU00.0090.01417.440-0.229-0.2290.0000.0000.0000.000
94A98LYS10.8120.89919.69311.53011.5300.0000.0000.0000.000
95A99ARG10.8120.90920.62310.99610.9960.0000.0000.0000.000
96A100GLY00.0340.01019.906-0.088-0.0880.0000.0000.0000.000
97A101LEU00.010-0.00714.284-0.484-0.4840.0000.0000.0000.000
98A102ARG10.8370.88616.29113.95413.9540.0000.0000.0000.000
99A103PHE0-0.018-0.00918.6180.0430.0430.0000.0000.0000.000
100A104ILE0-0.0020.00212.6680.0290.0290.0000.0000.0000.000
101A105GLN00.0340.02914.444-0.284-0.2840.0000.0000.0000.000
102A106VAL00.021-0.00915.479-0.037-0.0370.0000.0000.0000.000
103A107PHE0-0.009-0.00115.7000.4150.4150.0000.0000.0000.000
104A108LEU00.0120.00010.8030.1860.1860.0000.0000.0000.000
105A109GLN00.0120.01514.754-0.505-0.5050.0000.0000.0000.000
106A110SER0-0.017-0.02816.4270.4060.4060.0000.0000.0000.000
107A111ILE0-0.035-0.02716.2140.5180.5180.0000.0000.0000.000
108A112CYS0-0.045-0.02014.059-0.146-0.1460.0000.0000.0000.000
109A113ASP-1-0.845-0.89916.809-14.406-14.4060.0000.0000.0000.000
110A114GLY0-0.0040.01420.0850.5850.5850.0000.0000.0000.000
111A115GLU-1-0.832-0.85021.851-11.567-11.5670.0000.0000.0000.000
112A116ARG10.7880.84023.54310.09810.0980.0000.0000.0000.000
113A117ASP-1-0.813-0.89626.117-9.130-9.1300.0000.0000.0000.000
114A118GLU-1-0.781-0.86829.403-10.085-10.0850.0000.0000.0000.000
115A119ASN0-0.045-0.01931.5180.3150.3150.0000.0000.0000.000
116A120HIS0-0.094-0.04929.3460.1360.1360.0000.0000.0000.000
117A121PRO00.0580.04227.458-0.454-0.4540.0000.0000.0000.000
118A122ASN00.028-0.00523.137-0.831-0.8310.0000.0000.0000.000
119A123LEU0-0.0210.00423.653-0.403-0.4030.0000.0000.0000.000
120A124ILE00.0520.02418.348-0.063-0.0630.0000.0000.0000.000
121A125ARG10.8940.94422.23310.07210.0720.0000.0000.0000.000
122A126VAL00.0370.02425.0200.0500.0500.0000.0000.0000.000
123A127ASN0-0.008-0.00820.4270.1910.1910.0000.0000.0000.000
124A128ALA00.0300.00921.261-0.237-0.2370.0000.0000.0000.000
125A129THR0-0.031-0.03422.1540.1310.1310.0000.0000.0000.000
126A130LYS10.8690.91222.82112.06012.0600.0000.0000.0000.000
127A131ALA00.0130.01420.4950.1090.1090.0000.0000.0000.000
128A132TYR0-0.011-0.04422.5090.1880.1880.0000.0000.0000.000
129A133GLU-1-0.898-0.95724.661-9.647-9.6470.0000.0000.0000.000
130A134MET0-0.054-0.00323.3690.1020.1020.0000.0000.0000.000
131A135ALA00.0000.01022.4710.0920.0920.0000.0000.0000.000
132A136LEU0-0.044-0.02722.4100.0940.0940.0000.0000.0000.000
133A137LYS10.8580.94526.3529.8569.8560.0000.0000.0000.000
134A138LYS10.9500.98129.53410.37310.3730.0000.0000.0000.000
135A139TYR0-0.069-0.04227.8720.3090.3090.0000.0000.0000.000
136A140HIS00.0860.06326.3750.0700.0700.0000.0000.0000.000
137A141GLY00.0230.01431.7690.2720.2720.0000.0000.0000.000
138A142TRP00.015-0.01134.141-0.260-0.2600.0000.0000.0000.000
139A143ILE00.0180.01334.971-0.080-0.0800.0000.0000.0000.000
140A144VAL00.0480.02929.452-0.136-0.1360.0000.0000.0000.000
141A145GLN0-0.029-0.02030.440-0.220-0.2200.0000.0000.0000.000
142A146LYS10.9270.96331.2698.1588.1580.0000.0000.0000.000
143A147ILE0-0.0070.00428.403-0.018-0.0180.0000.0000.0000.000
144A148PHE00.0500.00923.650-0.282-0.2820.0000.0000.0000.000
145A149GLN00.006-0.00527.077-0.028-0.0280.0000.0000.0000.000
146A150ALA0-0.0080.00529.3130.0050.0050.0000.0000.0000.000
147A151ALA00.0100.01124.876-0.047-0.0470.0000.0000.0000.000
148A152LEU00.008-0.00123.393-0.264-0.2640.0000.0000.0000.000
149A153TYR0-0.004-0.00125.638-0.099-0.0990.0000.0000.0000.000
150A154ALA0-0.019-0.00625.8170.2100.2100.0000.0000.0000.000
151A155ALA0-0.039-0.00822.600-0.382-0.3820.0000.0000.0000.000
152A156PRO00.0190.02019.7480.4500.4500.0000.0000.0000.000
153A157TYR00.000-0.01322.4620.1930.1930.0000.0000.0000.000
154A158LYS10.9180.96319.14912.05112.0510.0000.0000.0000.000
155A159SER00.0900.04718.009-0.611-0.6110.0000.0000.0000.000
156A160ASP-1-0.929-0.96618.446-13.798-13.7980.0000.0000.0000.000
157A161PHE00.009-0.00313.679-0.867-0.8670.0000.0000.0000.000
158A162LEU00.0370.01313.494-1.343-1.3430.0000.0000.0000.000
159A163LYS10.9460.99612.99813.16513.1650.0000.0000.0000.000
160A164ALA0-0.0040.00313.944-0.823-0.8230.0000.0000.0000.000
161A165LEU0-0.025-0.0289.557-1.434-1.4340.0000.0000.0000.000
162A166SER0-0.001-0.0209.212-2.262-2.2620.0000.0000.0000.000
163A167LYS10.8710.9479.48426.58426.5840.0000.0000.0000.000
164A168GLY0-0.014-0.01710.648-1.874-1.8740.0000.0000.0000.000
165A169GLN0-0.043-0.0095.362-0.863-0.8630.0000.0000.0000.000
166A170ASN0-0.036-0.02110.6990.5720.5720.0000.0000.0000.000
167A171VAL00.0030.0078.840-0.954-0.9540.0000.0000.0000.000
168A172THR0-0.039-0.04012.2141.1401.1400.0000.0000.0000.000
169A173GLU-1-0.906-0.97313.532-16.107-16.1070.0000.0000.0000.000
170A174GLU-1-0.868-0.94814.187-16.805-16.8050.0000.0000.0000.000
171A175GLU-1-0.781-0.85911.155-21.396-21.3960.0000.0000.0000.000
172A176CYS0-0.104-0.0489.701-3.254-3.2540.0000.0000.0000.000
173A177LEU00.0350.0069.899-1.666-1.6660.0000.0000.0000.000
174A178GLU-1-0.924-0.95610.529-24.226-24.2260.0000.0000.0000.000
175A179LYS10.8910.9465.86528.89128.8910.0000.0000.0000.000
176A180ILE0-0.020-0.0037.012-2.341-2.3410.0000.0000.0000.000
177A181ARG10.8240.8769.27416.91516.9150.0000.0000.0000.000
178A182LEU0-0.0020.0025.6440.2700.2700.0000.0000.0000.000
179A183PHE0-0.041-0.0266.091-0.143-0.1430.0000.0000.0000.000
180A184LEU0-0.007-0.0077.7501.2201.2200.0000.0000.0000.000
181A185VAL00.0060.03211.0371.6961.6960.0000.0000.0000.000
182A186ASN00.010-0.0149.0683.3353.3350.0000.0000.0000.000
183A187TYR0-0.0220.00910.4151.2561.2560.0000.0000.0000.000
184A188THR00.001-0.01612.3381.4721.4720.0000.0000.0000.000
185A189ALA00.0370.02715.3320.9880.9880.0000.0000.0000.000
186A190THR0-0.021-0.03013.8460.8090.8090.0000.0000.0000.000
187A191ILE0-0.026-0.01315.1081.0501.0500.0000.0000.0000.000
188A192ASP-1-0.829-0.89918.203-13.803-13.8030.0000.0000.0000.000
189A193VAL00.0190.00919.8240.7890.7890.0000.0000.0000.000
190A194ILE00.0010.01218.2330.6040.6040.0000.0000.0000.000
191A195TYR0-0.037-0.04521.2690.9440.9440.0000.0000.0000.000
192A196GLU-1-0.856-0.89624.383-11.899-11.8990.0000.0000.0000.000
193A197MET0-0.0050.01223.6820.4530.4530.0000.0000.0000.000
194A198TYR0-0.014-0.05824.5940.3050.3050.0000.0000.0000.000
195A199THR0-0.056-0.02327.9820.5310.5310.0000.0000.0000.000
196A200GLN0-0.001-0.00529.5300.5700.5700.0000.0000.0000.000
197A201MET0-0.0260.01229.5400.4060.4060.0000.0000.0000.000
198A202ASN0-0.089-0.04232.0490.4040.4040.0000.0000.0000.000
199A203ALA00.0260.01229.5640.1680.1680.0000.0000.0000.000
200A204GLU-1-0.788-0.85828.449-11.324-11.3240.0000.0000.0000.000
201A205LEU00.002-0.01331.0380.4250.4250.0000.0000.0000.000
202A206ASN0-0.024-0.02631.705-0.483-0.4830.0000.0000.0000.000
203A207TYR00.0050.01132.0960.1600.1600.0000.0000.0000.000
204A208LYS10.8940.94232.8558.5398.5390.0000.0000.0000.000
205A209VAL-1-0.825-0.89830.155-9.239-9.2390.0000.0000.0000.000