FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-06

All entries: 70436

Number of unique PDB entries: 28101

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FMODB ID: N8M2Q

Calculation Name: 7KV0-A-Xray547

Preferred Name:

Target Type:

Ligand Name: 1,2-ethanediol

Ligand 3-letter code: EDO

Ligand of Interest (LOI):

PDB ID: 7KV0

Chain ID: A

ChEMBL ID:

UniProt ID:

Base Structure: X-ray

Registration Date: 2025-10-05

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 186
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2012106.924337
FMO2-HF: Nuclear repulsion 1941342.986619
FMO2-HF: Total energy -70763.937718
FMO2-MP2: Total energy -70973.996504


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:26:HIS)


Summations of interaction energy for fragment #1(A:26:HIS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
6.0077.478-0.018-0.648-0.806-0.002
Interaction energy analysis for fragmet #1(A:26:HIS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.869 / q_NPA : 0.915
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A28HIS00.0140.0123.865-4.336-2.865-0.018-0.648-0.806-0.002
4A29ALA00.0510.0276.2504.0124.0120.0000.0000.0000.000
5A30THR0-0.046-0.0179.0490.5960.5960.0000.0000.0000.000
6A31ASP-1-0.831-0.90712.086-21.610-21.6100.0000.0000.0000.000
7A32TYR0-0.028-0.02513.7201.1831.1830.0000.0000.0000.000
8A33TRP0-0.017-0.02217.394-0.290-0.2900.0000.0000.0000.000
9A34GLN0-0.0010.01220.3560.1490.1490.0000.0000.0000.000
10A35ASN00.005-0.02223.1870.2620.2620.0000.0000.0000.000
11A36TRP00.0230.02326.7270.0750.0750.0000.0000.0000.000
12A37THR00.019-0.01029.9240.0320.0320.0000.0000.0000.000
13A38ASP-1-0.830-0.90033.532-8.325-8.3250.0000.0000.0000.000
14A39GLY0-0.0090.00136.6980.1980.1980.0000.0000.0000.000
15A40GLY0-0.0100.00238.2970.2140.2140.0000.0000.0000.000
16A41GLY00.0160.01438.847-0.186-0.1860.0000.0000.0000.000
17A42THR0-0.032-0.02037.7600.0230.0230.0000.0000.0000.000
18A43VAL00.0440.00531.433-0.051-0.0510.0000.0000.0000.000
19A44ASN0-0.042-0.00432.276-0.174-0.1740.0000.0000.0000.000
20A45ALA00.0100.00227.451-0.146-0.1460.0000.0000.0000.000
21A46VAL0-0.003-0.00425.0620.0310.0310.0000.0000.0000.000
22A47ASN00.0350.00920.406-0.980-0.9800.0000.0000.0000.000
23A48GLY00.0310.01821.7270.1240.1240.0000.0000.0000.000
24A49SER00.012-0.01218.345-0.398-0.3980.0000.0000.0000.000
25A50GLY00.0210.01514.807-0.493-0.4930.0000.0000.0000.000
26A51GLY00.0840.04614.4920.5030.5030.0000.0000.0000.000
27A52ASN0-0.090-0.05415.4111.0851.0850.0000.0000.0000.000
28A53TYR0-0.020-0.00318.9600.3390.3390.0000.0000.0000.000
29A54SER00.0030.00422.2360.0730.0730.0000.0000.0000.000
30A55VAL00.0300.01725.8820.0110.0110.0000.0000.0000.000
31A56THR0-0.020-0.00629.0750.0730.0730.0000.0000.0000.000
32A57TRP0-0.0050.00030.970-0.085-0.0850.0000.0000.0000.000
33A58GLN0-0.016-0.02135.2780.2430.2430.0000.0000.0000.000
34A59ASN00.002-0.01439.0910.0430.0430.0000.0000.0000.000
35A60THR0-0.028-0.00636.0730.1040.1040.0000.0000.0000.000
36A61GLY0-0.0010.01439.1230.1810.1810.0000.0000.0000.000
37A62ASN0-0.024-0.03234.182-0.235-0.2350.0000.0000.0000.000
38A63PHE0-0.004-0.00230.141-0.022-0.0220.0000.0000.0000.000
39A64VAL00.0220.01626.366-0.085-0.0850.0000.0000.0000.000
40A65VAL00.0000.00625.133-0.114-0.1140.0000.0000.0000.000
41A66GLY00.006-0.00522.5130.0260.0260.0000.0000.0000.000
42A67LYS10.8120.92417.14516.54616.5460.0000.0000.0000.000
43A68GLY00.0270.00015.5420.1120.1120.0000.0000.0000.000
44A69TRP0-0.080-0.03210.2370.6020.6020.0000.0000.0000.000
45A70ASN0-0.016-0.01915.3191.0981.0980.0000.0000.0000.000
46A71VAL00.0250.02515.1640.8500.8500.0000.0000.0000.000
47A72GLY00.0220.00215.024-1.510-1.5100.0000.0000.0000.000
48A73SER0-0.004-0.01913.2670.1000.1000.0000.0000.0000.000
49A74PRO00.0480.02415.845-0.021-0.0210.0000.0000.0000.000
50A75ASN0-0.007-0.01613.1560.8610.8610.0000.0000.0000.000
51A76ARG10.8130.93111.27221.85921.8590.0000.0000.0000.000
52A77THR00.0050.00011.8192.0712.0710.0000.0000.0000.000
53A78ILE0-0.049-0.01212.286-1.746-1.7460.0000.0000.0000.000
54A79ASN0-0.050-0.03710.8051.7881.7880.0000.0000.0000.000
55A80TYR0-0.027-0.05614.5040.1300.1300.0000.0000.0000.000
56A81ASN0-0.032-0.01617.2800.7490.7490.0000.0000.0000.000
57A82ALA00.0270.01819.831-0.078-0.0780.0000.0000.0000.000
58A83GLY00.0550.03123.3250.4030.4030.0000.0000.0000.000
59A84VAL0-0.017-0.01324.9440.5070.5070.0000.0000.0000.000
60A85PHE00.006-0.01227.193-0.375-0.3750.0000.0000.0000.000
61A86ALA0-0.0170.00329.4560.1820.1820.0000.0000.0000.000
62A87PRO0-0.0150.01432.2490.1780.1780.0000.0000.0000.000
63A88SER0-0.001-0.00334.9340.1980.1980.0000.0000.0000.000
64A89GLY00.0500.00438.6880.1860.1860.0000.0000.0000.000
65A90ASN00.0230.00736.428-0.304-0.3040.0000.0000.0000.000
66A91GLY00.0680.03933.610-0.001-0.0010.0000.0000.0000.000
67A92TYR0-0.059-0.02829.7080.1690.1690.0000.0000.0000.000
68A93LEU00.0080.02023.908-0.159-0.1590.0000.0000.0000.000
69A94THR00.000-0.04025.1790.2280.2280.0000.0000.0000.000
70A95LEU00.0000.02118.688-0.453-0.4530.0000.0000.0000.000
71A96TYR0-0.006-0.01922.2550.5030.5030.0000.0000.0000.000
72A97GLY00.0450.01822.143-0.833-0.8330.0000.0000.0000.000
73A98TRP00.0410.02222.9560.7380.7380.0000.0000.0000.000
74A99THR0-0.0200.00122.692-0.614-0.6140.0000.0000.0000.000
75A100ARG10.8600.88924.97111.55711.5570.0000.0000.0000.000
76A101ASN0-0.022-0.00726.5810.0480.0480.0000.0000.0000.000
77A102ALA00.0560.03128.205-0.216-0.2160.0000.0000.0000.000
78A103LEU0-0.013-0.01728.702-0.390-0.3900.0000.0000.0000.000
79A104ILE0-0.058-0.02027.7820.3140.3140.0000.0000.0000.000
80A105GLU-1-0.766-0.83327.486-10.570-10.5700.0000.0000.0000.000
81A106TYR0-0.023-0.03320.5190.0110.0110.0000.0000.0000.000
82A107TYR0-0.037-0.03925.589-0.408-0.4080.0000.0000.0000.000
83A108VAL0-0.043-0.02622.6640.1100.1100.0000.0000.0000.000
84A109VAL00.0310.02824.760-0.351-0.3510.0000.0000.0000.000
85A110ASP-1-0.692-0.80122.860-13.246-13.2460.0000.0000.0000.000
86A111SER0-0.024-0.02026.4310.4790.4790.0000.0000.0000.000
87A112TRP00.0720.02829.294-0.216-0.2160.0000.0000.0000.000
88A113GLY00.0390.03432.4480.0550.0550.0000.0000.0000.000
89A114THR0-0.045-0.04035.605-0.025-0.0250.0000.0000.0000.000
90A115TYR00.0000.00837.2200.1720.1720.0000.0000.0000.000
91A116ARG10.7850.89032.9888.9178.9170.0000.0000.0000.000
92A117PRO00.0320.02832.4510.2160.2160.0000.0000.0000.000
93A118THR0-0.037-0.03234.918-0.044-0.0440.0000.0000.0000.000
94A119GLY00.0500.01336.8890.0240.0240.0000.0000.0000.000
95A120THR0-0.060-0.01837.9710.2000.2000.0000.0000.0000.000
96A121PHE00.0030.00335.392-0.242-0.2420.0000.0000.0000.000
97A122LYS10.9430.97333.6028.7218.7210.0000.0000.0000.000
98A123GLY00.0090.01434.626-0.039-0.0390.0000.0000.0000.000
99A124THR0-0.033-0.02031.609-0.107-0.1070.0000.0000.0000.000
100A125VAL00.0200.01425.185-0.040-0.0400.0000.0000.0000.000
101A126THR0-0.031-0.01026.455-0.003-0.0030.0000.0000.0000.000
102A127SER00.047-0.01420.717-0.408-0.4080.0000.0000.0000.000
103A128ASP-1-0.811-0.84418.574-15.489-15.4890.0000.0000.0000.000
104A129GLY00.0400.02321.1370.0470.0470.0000.0000.0000.000
105A130GLY0-0.061-0.03924.3250.4770.4770.0000.0000.0000.000
106A131THR00.0140.01226.487-0.201-0.2010.0000.0000.0000.000
107A132TYR0-0.075-0.06324.2110.1120.1120.0000.0000.0000.000
108A133ASP-1-0.752-0.85529.576-9.007-9.0070.0000.0000.0000.000
109A134ILE0-0.026-0.00629.242-0.238-0.2380.0000.0000.0000.000
110A135TYR00.009-0.00631.7110.3730.3730.0000.0000.0000.000
111A136THR00.0210.00232.567-0.263-0.2630.0000.0000.0000.000
112A137THR00.003-0.01134.7080.2620.2620.0000.0000.0000.000
113A138MET0-0.0010.01535.641-0.250-0.2500.0000.0000.0000.000
114A139ARG10.9070.97434.6658.9078.9070.0000.0000.0000.000
115A140TYR00.0590.00837.815-0.035-0.0350.0000.0000.0000.000
116A141ASN0-0.020-0.00740.820-0.026-0.0260.0000.0000.0000.000
117A142ALA00.0220.02537.1270.0710.0710.0000.0000.0000.000
118A143PRO00.015-0.00534.586-0.070-0.0700.0000.0000.0000.000
119A144SER00.004-0.00331.831-0.196-0.1960.0000.0000.0000.000
120A145ILE0-0.027-0.01626.1980.0180.0180.0000.0000.0000.000
121A146ASP-1-0.817-0.87429.734-10.304-10.3040.0000.0000.0000.000
122A147GLY00.0260.02332.6800.3340.3340.0000.0000.0000.000
123A148THR0-0.037-0.01635.289-0.168-0.1680.0000.0000.0000.000
124A149GLN0-0.022-0.01134.7230.2270.2270.0000.0000.0000.000
125A150THR0-0.011-0.01237.6350.1500.1500.0000.0000.0000.000
126A151PHE0-0.047-0.01832.611-0.073-0.0730.0000.0000.0000.000
127A152ALA00.0470.01632.7810.1800.1800.0000.0000.0000.000
128A153GLN00.000-0.01131.294-0.031-0.0310.0000.0000.0000.000
129A154TYR0-0.053-0.05327.3630.4090.4090.0000.0000.0000.000
130A155TRP00.022-0.00628.843-0.424-0.4240.0000.0000.0000.000
131A156SER0-0.0190.00026.0270.3190.3190.0000.0000.0000.000
132A157VAL0-0.007-0.00328.179-0.304-0.3040.0000.0000.0000.000
133A158ARG10.8910.96925.65611.73711.7370.0000.0000.0000.000
134A159GLN0-0.043-0.04529.6760.2230.2230.0000.0000.0000.000
135A160SER0-0.036-0.01731.4620.3400.3400.0000.0000.0000.000
136A161LYS10.8210.92430.3268.7558.7550.0000.0000.0000.000
137A162ARG10.7820.87220.31414.20714.2070.0000.0000.0000.000
138A163ALA00.0010.00826.6290.2000.2000.0000.0000.0000.000
139A164THR0-0.016-0.01324.984-0.409-0.4090.0000.0000.0000.000
140A165GLY00.0110.01024.6510.2350.2350.0000.0000.0000.000
141A166VAL0-0.0120.00622.098-0.326-0.3260.0000.0000.0000.000
142A167ASN0-0.008-0.01815.5930.4760.4760.0000.0000.0000.000
143A168SER00.0000.01318.6200.5260.5260.0000.0000.0000.000
144A169ALA00.0220.00615.326-0.985-0.9850.0000.0000.0000.000
145A170ILE00.0050.00816.7751.1811.1810.0000.0000.0000.000
146A171THR00.023-0.02215.577-1.381-1.3810.0000.0000.0000.000
147A172PHE0-0.019-0.01616.7770.9850.9850.0000.0000.0000.000
148A173SER00.0690.04216.3150.9090.9090.0000.0000.0000.000
149A174ASN0-0.006-0.01318.5880.7190.7190.0000.0000.0000.000
150A175HIS00.0100.01521.0941.1361.1360.0000.0000.0000.000
151A176VAL00.0100.00720.7160.5770.5770.0000.0000.0000.000
152A177ASN00.0140.00520.5780.5670.5670.0000.0000.0000.000
153A178ALA0-0.0030.00824.0100.5500.5500.0000.0000.0000.000
154A179TRP00.020-0.00624.7740.3560.3560.0000.0000.0000.000
155A180ALA00.0560.03826.2320.4370.4370.0000.0000.0000.000
156A181SER0-0.096-0.06228.1030.4730.4730.0000.0000.0000.000
157A182LYS10.8780.93830.2029.8789.8780.0000.0000.0000.000
158A183GLY0-0.0020.00331.8570.2820.2820.0000.0000.0000.000
159A184MET0-0.090-0.02029.4920.1740.1740.0000.0000.0000.000
160A185ASN00.0140.00427.783-0.641-0.6410.0000.0000.0000.000
161A186LEU00.0050.01222.8010.2100.2100.0000.0000.0000.000
162A187GLY0-0.0050.00925.8960.1350.1350.0000.0000.0000.000
163A188SER00.006-0.00523.806-0.397-0.3970.0000.0000.0000.000
164A189SER0-0.066-0.01922.546-0.627-0.6270.0000.0000.0000.000
165A190TRP00.0200.00619.0970.0260.0260.0000.0000.0000.000
166A191SER00.0120.01720.395-0.373-0.3730.0000.0000.0000.000
167A192TYR00.0410.01919.314-0.656-0.6560.0000.0000.0000.000
168A193GLN0-0.0150.00316.032-0.559-0.5590.0000.0000.0000.000
169A194VAL0-0.020-0.01117.680-1.118-1.1180.0000.0000.0000.000
170A195LEU00.0030.01218.6760.5090.5090.0000.0000.0000.000
171A196ALA0-0.008-0.01620.512-0.099-0.0990.0000.0000.0000.000
172A197THR0-0.0120.00223.9220.2060.2060.0000.0000.0000.000
173A198GLU-1-0.822-0.89627.226-10.188-10.1880.0000.0000.0000.000
174A199GLY00.007-0.01030.1760.0610.0610.0000.0000.0000.000
175A200TYR0-0.015-0.01133.7640.0510.0510.0000.0000.0000.000
176A201GLN00.0000.00137.3000.0870.0870.0000.0000.0000.000
177A202SER0-0.026-0.00136.7900.1020.1020.0000.0000.0000.000
178A203SER00.0110.01438.0110.0640.0640.0000.0000.0000.000
179A204GLY00.0250.00835.0520.0010.0010.0000.0000.0000.000
180A205SER0-0.029-0.00731.414-0.063-0.0630.0000.0000.0000.000
181A206SER0-0.026-0.02727.0050.0140.0140.0000.0000.0000.000
182A207ASN0-0.009-0.00423.641-0.411-0.4110.0000.0000.0000.000
183A208VAL00.0160.00720.2810.0310.0310.0000.0000.0000.000
184A209THR0-0.0080.01015.832-0.098-0.0980.0000.0000.0000.000
185A210VAL0-0.012-0.01215.3070.1050.1050.0000.0000.0000.000
186A211TRP-1-0.785-0.8769.936-27.527-27.5270.0000.0000.0000.000