FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: N91YQ

Calculation Name: 3QLL-A-Xray372

Preferred Name:
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Target Type:
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Ligand Name:
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ligand 3-letter code:
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PDB ID: 3QLL

Chain ID: A

ChEMBL ID:
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UniProt ID: Q9ZC38

Base Structure: X-ray

Registration Date: 2023-06-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 217
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2401152.459875
FMO2-HF: Nuclear repulsion 2320490.836256
FMO2-HF: Total energy -80661.62362
FMO2-MP2: Total energy -80897.598235


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:5:ASP)


Summations of interaction energy for fragment #1(A:5:ASP)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
69.83480.1713.392-5.957-7.7720.035
Interaction energy analysis for fragmet #1(A:5:ASP)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.907 / q_NPA : -0.975
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A7TYR0-0.0160.0052.529-23.884-18.0941.411-3.246-3.9550.034
4A8GLN0-0.022-0.0062.525-21.131-16.9011.982-2.645-3.5670.001
5A9THR0-0.067-0.0054.710-9.739-9.5500.000-0.053-0.1350.000
6A10ARG10.8660.9046.991-24.997-24.9970.0000.0000.0000.000
7A11SER0-0.012-0.04210.795-1.674-1.6740.0000.0000.0000.000
8A12TRP00.0090.0027.748-0.603-0.6030.0000.0000.0000.000
9A13LEU0-0.019-0.02013.023-1.281-1.2810.0000.0000.0000.000
10A14PHE00.0140.02416.0320.2580.2580.0000.0000.0000.000
11A15THR0-0.043-0.03218.472-0.749-0.7490.0000.0000.0000.000
12A16PRO00.0890.05620.5900.3160.3160.0000.0000.0000.000
13A17ALA00.0340.04322.777-0.021-0.0210.0000.0000.0000.000
14A18THR0-0.026-0.00723.695-0.197-0.1970.0000.0000.0000.000
15A19ARG10.8410.90819.572-13.309-13.3090.0000.0000.0000.000
16A30GLY0-0.021-0.02715.553-0.157-0.1570.0000.0000.0000.000
17A31ALA0-0.031-0.02313.5320.5990.5990.0000.0000.0000.000
18A32ASP-1-0.755-0.8428.03526.12726.1270.0000.0000.0000.000
19A33VAL00.0210.0187.4331.0591.0590.0000.0000.0000.000
20A34ALA0-0.044-0.00810.110-1.409-1.4090.0000.0000.0000.000
21A35ILE00.022-0.01013.2390.7220.7220.0000.0000.0000.000
22A36ILE0-0.022-0.00615.306-1.170-1.1700.0000.0000.0000.000
23A37ASP-1-0.778-0.85618.28214.08214.0820.0000.0000.0000.000
24A38LEU0-0.007-0.00920.807-0.644-0.6440.0000.0000.0000.000
25A39GLU-1-0.896-0.96923.19812.50912.5090.0000.0000.0000.000
26A40ASP-1-0.859-0.93124.92911.22611.2260.0000.0000.0000.000
27A41SER0-0.131-0.07123.829-0.461-0.4610.0000.0000.0000.000
28A42VAL0-0.072-0.02125.409-0.400-0.4000.0000.0000.0000.000
29A43SER00.0180.00728.111-0.114-0.1140.0000.0000.0000.000
30A44GLN00.0600.00231.2450.3020.3020.0000.0000.0000.000
31A45ALA0-0.053-0.03133.150-0.024-0.0240.0000.0000.0000.000
32A46ASP-1-0.887-0.94730.5009.2339.2330.0000.0000.0000.000
33A47LYS10.7880.92327.385-10.844-10.8440.0000.0000.0000.000
34A48GLU-1-0.886-0.94628.6569.9749.9740.0000.0000.0000.000
35A49GLN0-0.005-0.01029.7510.2840.2840.0000.0000.0000.000
36A50ALA0-0.065-0.04925.8430.1960.1960.0000.0000.0000.000
37A51ARG10.8480.91725.132-10.227-10.2270.0000.0000.0000.000
38A52GLN00.0260.00124.7370.3120.3120.0000.0000.0000.000
39A53LYS10.9100.95325.170-10.091-10.0910.0000.0000.0000.000
40A54ALA00.0100.02020.6070.2010.2010.0000.0000.0000.000
41A55ILE0-0.034-0.00720.8850.4230.4230.0000.0000.0000.000
42A56SER0-0.077-0.01921.2490.0620.0620.0000.0000.0000.000
43A66LEU0-0.023-0.0359.3220.0580.0580.0000.0000.0000.000
44A67PRO0-0.0180.0195.974-1.047-1.0470.0000.0000.0000.000
45A68LEU0-0.025-0.0238.545-1.159-1.1590.0000.0000.0000.000
46A69ALA00.003-0.00911.2441.0311.0310.0000.0000.0000.000
47A70LEU0-0.030-0.02012.751-1.303-1.3030.0000.0000.0000.000
48A71ARG10.8720.92216.268-13.931-13.9310.0000.0000.0000.000
49A72ILE0-0.0090.00018.362-0.801-0.8010.0000.0000.0000.000
50A73ASN00.016-0.01921.186-0.103-0.1030.0000.0000.0000.000
51A74GLY00.0950.05123.4880.3230.3230.0000.0000.0000.000
52A75LEU00.0440.00622.733-0.411-0.4110.0000.0000.0000.000
53A76ASP-1-0.963-0.95725.43510.92910.9290.0000.0000.0000.000
54A77THR0-0.020-0.02627.364-0.479-0.4790.0000.0000.0000.000
55A78ARG10.9110.94029.061-8.615-8.6150.0000.0000.0000.000
56A79ALA00.0080.00228.3320.0100.0100.0000.0000.0000.000
57A80GLY00.0660.05125.3050.1580.1580.0000.0000.0000.000
58A81ILE0-0.017-0.01425.3430.2760.2760.0000.0000.0000.000
59A82GLU-1-0.865-0.94927.3139.7589.7580.0000.0000.0000.000
60A83ASP-1-0.750-0.84623.47811.98711.9870.0000.0000.0000.000
61A84ILE0-0.0110.00222.0150.3420.3420.0000.0000.0000.000
62A85HIS0-0.034-0.01723.9690.3250.3250.0000.0000.0000.000
63A86ALA00.012-0.00325.618-0.033-0.0330.0000.0000.0000.000
64A87LEU0-0.045-0.02719.1800.1060.1060.0000.0000.0000.000
65A88LEU0-0.063-0.02921.7930.1540.1540.0000.0000.0000.000
66A89GLU-1-0.963-0.95323.9379.8299.8290.0000.0000.0000.000
67A90CYS0-0.077-0.04724.468-0.218-0.2180.0000.0000.0000.000
68A91GLY00.0080.00222.5910.1720.1720.0000.0000.0000.000
69A92SER0-0.054-0.01919.1220.6570.6570.0000.0000.0000.000
70A93LEU00.003-0.00715.780-0.238-0.2380.0000.0000.0000.000
71A94PRO0-0.0380.00313.3450.3080.3080.0000.0000.0000.000
72A95ASP-1-0.769-0.8908.08725.03525.0350.0000.0000.0000.000
73A96TYR0-0.047-0.0274.2811.1981.326-0.001-0.013-0.1150.000
74A97LEU00.0170.01210.892-1.712-1.7120.0000.0000.0000.000
75A98VAL0-0.036-0.03613.2870.6880.6880.0000.0000.0000.000
76A99LEU00.006-0.00815.359-1.176-1.1760.0000.0000.0000.000
77A100PRO00.0260.01918.2830.5630.5630.0000.0000.0000.000
78A101LYS10.9300.94020.985-11.797-11.7970.0000.0000.0000.000
79A102THR0-0.036-0.00118.4070.0070.0070.0000.0000.0000.000
80A103GLU-1-0.809-0.91821.18111.68311.6830.0000.0000.0000.000
81A104SER0-0.064-0.02622.509-0.298-0.2980.0000.0000.0000.000
82A105ALA00.1020.04520.3630.4940.4940.0000.0000.0000.000
83A106ALA00.005-0.00320.5910.4350.4350.0000.0000.0000.000
84A107HIS0-0.025-0.02121.016-0.177-0.1770.0000.0000.0000.000
85A108LEU00.0570.02915.3970.0570.0570.0000.0000.0000.000
86A109GLN0-0.062-0.04918.013-0.454-0.4540.0000.0000.0000.000
87A110ILE0-0.054-0.02219.902-0.135-0.1350.0000.0000.0000.000
88A111LEU00.0750.03117.284-0.278-0.2780.0000.0000.0000.000
89A112ASP-1-0.852-0.90916.37018.81618.8160.0000.0000.0000.000
90A113ARG10.9150.93617.484-13.608-13.6080.0000.0000.0000.000
91A114LEU0-0.034-0.01020.813-0.401-0.4010.0000.0000.0000.000
92A115MET0-0.0070.02215.311-0.348-0.3480.0000.0000.0000.000
93A116MET0-0.049-0.02117.0530.6980.6980.0000.0000.0000.000
94A117PHE0-0.047-0.02219.150-0.267-0.2670.0000.0000.0000.000
95A118ALA00.0430.01520.0180.0340.0340.0000.0000.0000.000
96A119GLY00.0370.00816.2210.4930.4930.0000.0000.0000.000
97A120SER0-0.024-0.00514.6710.4510.4510.0000.0000.0000.000
98A121ASP-1-0.946-0.97710.79022.78622.7860.0000.0000.0000.000
99A122THR0-0.0270.00510.0751.8881.8880.0000.0000.0000.000
100A123ARG10.8860.9335.725-38.603-38.6030.0000.0000.0000.000
101A124LEU0-0.013-0.0119.783-1.576-1.5760.0000.0000.0000.000
102A125ILE00.0030.0108.5662.5782.5780.0000.0000.0000.000
103A126GLY00.0280.01912.342-1.675-1.6750.0000.0000.0000.000
104A127ILE0-0.011-0.00215.5250.9610.9610.0000.0000.0000.000
105A128ILE0-0.025-0.01418.142-0.868-0.8680.0000.0000.0000.000
106A129GLU-1-0.765-0.88320.46814.00014.0000.0000.0000.0000.000
107A130SER0-0.038-0.03623.563-0.381-0.3810.0000.0000.0000.000
108A131VAL00.0370.00325.8080.4360.4360.0000.0000.0000.000
109A132ARG10.8560.93527.539-10.403-10.4030.0000.0000.0000.000
110A133GLY00.0630.03523.7310.1540.1540.0000.0000.0000.000
111A134LEU0-0.028-0.01022.5970.5080.5080.0000.0000.0000.000
112A135ASN0-0.047-0.03823.8670.3640.3640.0000.0000.0000.000
113A136ALA00.0000.01624.063-0.178-0.1780.0000.0000.0000.000
114A137VAL00.0360.01318.3920.5610.5610.0000.0000.0000.000
115A138GLU-1-0.785-0.87318.84315.34415.3440.0000.0000.0000.000
116A139SER0-0.087-0.04219.0170.4070.4070.0000.0000.0000.000
117A140ILE0-0.021-0.01817.1660.2560.2560.0000.0000.0000.000
118A141ALA00.0120.00114.5320.7930.7930.0000.0000.0000.000
119A142ALA00.0220.03014.1291.3671.3670.0000.0000.0000.000
120A143ALA0-0.087-0.02716.407-0.531-0.5310.0000.0000.0000.000
121A144THR0-0.015-0.03914.205-0.510-0.5100.0000.0000.0000.000
122A145PRO00.0370.02011.8251.2071.2070.0000.0000.0000.000
123A146LYS10.9040.96210.175-16.943-16.9430.0000.0000.0000.000
124A147LEU0-0.0610.00410.0381.1451.1450.0000.0000.0000.000
125A148ALA0-0.038-0.0215.8762.8332.8330.0000.0000.0000.000
126A149GLY00.0750.0357.2934.6924.6920.0000.0000.0000.000
127A150LEU0-0.042-0.0069.988-2.389-2.3890.0000.0000.0000.000
128A151ILE00.0270.02713.6110.5110.5110.0000.0000.0000.000
129A152PHE0-0.001-0.01015.563-1.063-1.0630.0000.0000.0000.000
130A153GLY00.0420.01319.0710.0350.0350.0000.0000.0000.000
131A154ALA0-0.024-0.02721.837-0.629-0.6290.0000.0000.0000.000
132A155ALA0-0.011-0.00924.508-0.500-0.5000.0000.0000.0000.000
133A156ASP-1-0.814-0.90125.53511.47811.4780.0000.0000.0000.000
134A157MET0-0.062-0.00623.725-0.529-0.5290.0000.0000.0000.000
135A158ALA0-0.046-0.03227.172-0.355-0.3550.0000.0000.0000.000
136A159ALA00.0180.01930.034-0.446-0.4460.0000.0000.0000.000
137A160ASP-1-0.872-0.93829.63010.39710.3970.0000.0000.0000.000
138A161ILE0-0.085-0.03928.574-0.252-0.2520.0000.0000.0000.000
139A162GLY0-0.0170.00032.687-0.341-0.3410.0000.0000.0000.000
140A163ALA0-0.081-0.03631.958-0.264-0.2640.0000.0000.0000.000
141A164ALA00.002-0.00433.2920.0470.0470.0000.0000.0000.000
142A165SER00.036-0.01128.7330.1190.1190.0000.0000.0000.000
143A166THR0-0.0080.00328.0640.3750.3750.0000.0000.0000.000
144A167TRP00.0440.00820.743-0.096-0.0960.0000.0000.0000.000
145A168GLU-1-0.904-0.95627.21210.73610.7360.0000.0000.0000.000
146A169PRO0-0.054-0.02829.6230.0730.0730.0000.0000.0000.000
147A170LEU00.0150.01725.5560.0740.0740.0000.0000.0000.000
148A171ALA0-0.0060.01024.9450.6050.6050.0000.0000.0000.000
149A172LEU00.010-0.00324.4420.4960.4960.0000.0000.0000.000
150A173ALA00.009-0.00324.2640.3580.3580.0000.0000.0000.000
151A174ARG10.9050.95220.583-14.139-14.1390.0000.0000.0000.000
152A175ALA00.0300.01919.7220.9110.9110.0000.0000.0000.000
153A176ARG10.7670.86520.162-12.700-12.7000.0000.0000.0000.000
154A177LEU00.0220.01216.3740.3200.3200.0000.0000.0000.000
155A178VAL00.0250.01114.8571.1341.1340.0000.0000.0000.000
156A179SER0-0.040-0.01915.2471.4261.4260.0000.0000.0000.000
157A180ALA00.0200.01616.5490.5090.5090.0000.0000.0000.000
158A181CYS0-0.044-0.01411.8110.5020.5020.0000.0000.0000.000
159A182ALA00.0390.01711.7581.9941.9940.0000.0000.0000.000
160A183MET0-0.062-0.02312.7650.5640.5640.0000.0000.0000.000
161A184ASN0-0.062-0.04512.469-1.073-1.0730.0000.0000.0000.000
162A185GLY0-0.0230.0139.0201.2311.2310.0000.0000.0000.000
163A186ILE0-0.035-0.0087.0386.2916.2910.0000.0000.0000.000
164A187PRO00.0250.0116.083-3.907-3.9070.0000.0000.0000.000
165A188ALA00.0180.0058.914-2.070-2.0700.0000.0000.0000.000
166A189ILE0-0.030-0.0279.9100.4800.4800.0000.0000.0000.000
167A190ASP-1-0.746-0.88213.58314.94314.9430.0000.0000.0000.000
168A191ALA00.0060.00316.9530.3440.3440.0000.0000.0000.000
169A192PRO0-0.0120.01519.4950.1910.1910.0000.0000.0000.000
170A193PHE0-0.0130.00520.893-0.482-0.4820.0000.0000.0000.000
171A194PHE00.012-0.00123.892-0.014-0.0140.0000.0000.0000.000
172A195ASP-1-0.857-0.93426.7389.9649.9640.0000.0000.0000.000
173A196VAL0-0.045-0.03325.6860.2740.2740.0000.0000.0000.000
174A197HIS0-0.019-0.01027.6040.1670.1670.0000.0000.0000.000
175A198ASP-1-0.857-0.90629.91510.43310.4330.0000.0000.0000.000
176A199VAL00.018-0.00225.9450.3920.3920.0000.0000.0000.000
177A200SER00.005-0.00426.5940.4430.4430.0000.0000.0000.000
178A201GLY00.0060.00127.2390.3000.3000.0000.0000.0000.000
179A202LEU0-0.0150.00721.1210.4290.4290.0000.0000.0000.000
180A203GLN0-0.0080.00822.6050.5250.5250.0000.0000.0000.000
181A204SER00.0020.00922.7100.5690.5690.0000.0000.0000.000
182A205GLU-1-0.869-0.92021.75714.10314.1030.0000.0000.0000.000
183A206THR0-0.033-0.05817.5440.7090.7090.0000.0000.0000.000
184A207LEU00.0080.00818.4550.8210.8210.0000.0000.0000.000
185A208ARG10.9520.99319.930-11.784-11.7840.0000.0000.0000.000
186A209ALA0-0.017-0.00617.4100.2280.2280.0000.0000.0000.000
187A210SER00.012-0.00115.4071.2601.2600.0000.0000.0000.000
188A211ASP-1-0.956-0.97016.23815.84915.8490.0000.0000.0000.000
189A212PHE0-0.125-0.07818.711-0.422-0.4220.0000.0000.0000.000
190A213GLY0-0.0060.01214.762-0.105-0.1050.0000.0000.0000.000
191A214PHE0-0.069-0.03813.1161.3461.3460.0000.0000.0000.000
192A215SER0-0.027-0.0108.3680.5270.5270.0000.0000.0000.000
193A216ALA00.0100.00910.0480.9010.9010.0000.0000.0000.000
194A217LYS10.7730.87411.925-17.161-17.1610.0000.0000.0000.000
195A218ALA00.0070.00514.9950.3400.3400.0000.0000.0000.000
196A219ALA0-0.005-0.01316.425-0.797-0.7970.0000.0000.0000.000
197A220ILE00.0120.00418.8140.2350.2350.0000.0000.0000.000
198A221HIS00.0470.02321.195-0.289-0.2890.0000.0000.0000.000
199A222PRO00.0400.00519.8430.4440.4440.0000.0000.0000.000
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