FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: N94LQ

Calculation Name: 4TVE-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4TVE

Chain ID: A

ChEMBL ID:

UniProt ID: G0W5T0

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 259
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3408601.136147
FMO2-HF: Nuclear repulsion 3302951.599653
FMO2-HF: Total energy -105649.536494
FMO2-MP2: Total energy -105954.651274


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:31:SER)


Summations of interaction energy for fragment #1(A:31:SER)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-29.57-30.62116.088-8.277-6.759-0.081
Interaction energy analysis for fragmet #1(A:31:SER)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.081 / q_NPA : -0.063
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A33GLU-1-0.942-0.9703.681-2.771-1.4670.002-0.570-0.7360.002
4A34GLY0-0.003-0.0076.2400.3450.3450.0000.0000.0000.000
5A35PHE0-0.035-0.0062.975-0.3750.1940.078-0.142-0.5050.000
6A36PRO0-0.0200.0065.1010.4830.523-0.0010.000-0.0390.000
7A37LYS10.9410.9586.8960.0740.0740.0000.0000.0000.000
8A38PRO0-0.012-0.0128.384-0.062-0.0620.0000.0000.0000.000
9A39LEU0-0.032-0.00711.0540.0560.0560.0000.0000.0000.000
10A40THR00.0290.01014.4830.0370.0370.0000.0000.0000.000
11A41GLY00.006-0.01617.364-0.021-0.0210.0000.0000.0000.000
12A42SER0-0.047-0.01519.6910.0060.0060.0000.0000.0000.000
13A43THR0-0.039-0.03616.0510.0030.0030.0000.0000.0000.000
14A44PHE00.0220.02017.676-0.026-0.0260.0000.0000.0000.000
15A45ASP-1-0.781-0.90319.452-0.179-0.1790.0000.0000.0000.000
16A46ASN0-0.028-0.02821.6650.0040.0040.0000.0000.0000.000
17A47GLU-1-0.791-0.86716.029-0.447-0.4470.0000.0000.0000.000
18A48MET0-0.063-0.02617.388-0.024-0.0240.0000.0000.0000.000
19A49LYS10.8570.93721.3220.1830.1830.0000.0000.0000.000
20A50ASN0-0.047-0.01320.5080.0350.0350.0000.0000.0000.000
21A51GLY00.0430.02620.961-0.027-0.0270.0000.0000.0000.000
22A52LEU0-0.024-0.01321.4180.0160.0160.0000.0000.0000.000
23A53HIS10.8100.88215.8720.3720.3720.0000.0000.0000.000
24A54ILE00.0090.01815.9870.0530.0530.0000.0000.0000.000
25A55VAL0-0.006-0.01014.999-0.092-0.0920.0000.0000.0000.000
26A56GLU-1-0.862-0.92410.345-0.661-0.6610.0000.0000.0000.000
27A57PHE00.0300.00313.435-0.020-0.0200.0000.0000.0000.000
28A58PHE00.017-0.00910.0310.0300.0300.0000.0000.0000.000
29A59SER00.0640.03114.4840.0390.0390.0000.0000.0000.000
30A60PRO00.013-0.00213.368-0.004-0.0040.0000.0000.0000.000
31A61TYR0-0.042-0.00814.6210.0310.0310.0000.0000.0000.000
32A62CYS00.1120.08812.763-0.063-0.0630.0000.0000.0000.000
33A63HIS00.0430.03116.5270.0140.0140.0000.0000.0000.000
34A64HIS10.8320.88516.4900.0230.0230.0000.0000.0000.000
35A66LYS11.0040.99610.505-0.379-0.3790.0000.0000.0000.000
36A67SER0-0.009-0.0079.907-0.022-0.0220.0000.0000.0000.000
37A68LEU0-0.018-0.00711.0330.0200.0200.0000.0000.0000.000
38A69ALA00.0680.0456.017-0.065-0.0650.0000.0000.0000.000
39A70PRO00.0510.0195.850-0.604-0.6040.0000.0000.0000.000
40A71ILE0-0.041-0.0156.905-0.101-0.1010.0000.0000.0000.000
41A72TRP00.0100.0237.8420.0940.0940.0000.0000.0000.000
42A73GLU-1-0.825-0.9011.742-25.698-28.66216.009-7.565-5.479-0.083
43A74LYS10.8760.9275.8080.5240.5240.0000.0000.0000.000
44A75THR0-0.032-0.0527.4150.2300.2300.0000.0000.0000.000
45A76TRP00.0310.0116.576-0.018-0.0180.0000.0000.0000.000
46A77GLU-1-0.930-0.9736.552-0.881-0.8810.0000.0000.0000.000
47A78SER0-0.123-0.0588.6270.2470.2470.0000.0000.0000.000
48A79PHE0-0.003-0.01311.8370.1130.1130.0000.0000.0000.000
49A80HIS0-0.0100.01010.6060.1440.1440.0000.0000.0000.000
50A81GLU-1-0.906-0.93913.077-0.493-0.4930.0000.0000.0000.000
51A82GLU-1-0.793-0.87915.687-0.288-0.2880.0000.0000.0000.000
52A83GLY00.0130.00216.5040.0470.0470.0000.0000.0000.000
53A84SER00.011-0.00615.8450.0430.0430.0000.0000.0000.000
54A85LYS10.8310.93718.2800.2820.2820.0000.0000.0000.000
55A86LEU0-0.055-0.02120.4440.0430.0430.0000.0000.0000.000
56A87ASN0-0.050-0.02320.8750.0050.0050.0000.0000.0000.000
57A88ILE0-0.037-0.01418.0630.0210.0210.0000.0000.0000.000
58A89THR00.0270.01413.643-0.055-0.0550.0000.0000.0000.000
59A90LEU0-0.030-0.00411.2240.0570.0570.0000.0000.0000.000
60A91SER00.013-0.00711.458-0.078-0.0780.0000.0000.0000.000
61A92GLN0-0.022-0.0267.363-0.009-0.0090.0000.0000.0000.000
62A93VAL00.0350.02012.0380.0370.0370.0000.0000.0000.000
63A94ASN0-0.002-0.00212.355-0.022-0.0220.0000.0000.0000.000
64A95CYS0-0.008-0.03714.157-0.005-0.0050.0000.0000.0000.000
65A96VAL0-0.064-0.02216.7060.0120.0120.0000.0000.0000.000
66A97GLU-1-0.916-0.94814.8360.1250.1250.0000.0000.0000.000
67A98ASP-1-0.810-0.90117.436-0.108-0.1080.0000.0000.0000.000
68A99GLY00.0150.01119.603-0.018-0.0180.0000.0000.0000.000
69A100ASP-1-0.896-0.94922.351-0.052-0.0520.0000.0000.0000.000
70A101LEU0-0.021-0.00918.997-0.006-0.0060.0000.0000.0000.000
71A103SER0-0.0100.01021.975-0.003-0.0030.0000.0000.0000.000
72A104LYS10.8260.91724.8010.1440.1440.0000.0000.0000.000
73A105GLU-1-0.851-0.89822.184-0.166-0.1660.0000.0000.0000.000
74A106ASN0-0.068-0.02924.6300.0000.0000.0000.0000.0000.000
75A107ILE0-0.051-0.03619.568-0.008-0.0080.0000.0000.0000.000
76A108GLU-1-0.940-0.96722.940-0.068-0.0680.0000.0000.0000.000
77A109TYR0-0.046-0.01821.1960.0100.0100.0000.0000.0000.000
78A110PHE00.0230.01117.065-0.017-0.0170.0000.0000.0000.000
79A111PRO0-0.009-0.03914.7840.0250.0250.0000.0000.0000.000
80A112TYR0-0.004-0.00116.8380.0100.0100.0000.0000.0000.000
81A113ILE0-0.054-0.02115.263-0.026-0.0260.0000.0000.0000.000
82A114LYS10.8700.95818.0370.2020.2020.0000.0000.0000.000
83A115LEU0-0.0150.00619.377-0.042-0.0420.0000.0000.0000.000
84A116TYR0-0.032-0.06520.6090.0270.0270.0000.0000.0000.000
85A117GLY00.0560.01922.243-0.023-0.0230.0000.0000.0000.000
86A118PRO0-0.0020.01124.4340.0080.0080.0000.0000.0000.000
87A119SER0-0.063-0.02926.2010.0110.0110.0000.0000.0000.000
88A120GLY00.0040.00925.8990.0140.0140.0000.0000.0000.000
89A121PHE0-0.016-0.01723.884-0.012-0.0120.0000.0000.0000.000
90A122ILE0-0.0170.00225.0660.0120.0120.0000.0000.0000.000
91A123LYS10.8200.88925.1040.2000.2000.0000.0000.0000.000
92A124ASN00.0560.03523.184-0.030-0.0300.0000.0000.0000.000
93A125TYR0-0.009-0.01118.5350.0070.0070.0000.0000.0000.000
94A126ASP-1-0.858-0.92921.205-0.163-0.1630.0000.0000.0000.000
95A127GLY0-0.0150.00322.4220.0170.0170.0000.0000.0000.000
96A128ALA00.0170.00420.598-0.007-0.0070.0000.0000.0000.000
97A129ARG10.8510.92015.4550.1950.1950.0000.0000.0000.000
98A130LYS10.9290.95215.3550.1300.1300.0000.0000.0000.000
99A131GLU-1-0.711-0.83012.195-0.444-0.4440.0000.0000.0000.000
100A132GLU-1-0.860-0.92514.351-0.190-0.1900.0000.0000.0000.000
101A133ALA0-0.035-0.01817.8140.0080.0080.0000.0000.0000.000
102A134PHE00.0180.00313.3260.0110.0110.0000.0000.0000.000
103A135ILE00.0420.03014.3040.0080.0080.0000.0000.0000.000
104A136LYS10.8720.92517.9070.2120.2120.0000.0000.0000.000
105A137PHE00.0080.00920.0370.0190.0190.0000.0000.0000.000
106A138ALA00.0300.01218.1440.0150.0150.0000.0000.0000.000
107A139ARG10.8080.86420.1590.3090.3090.0000.0000.0000.000
108A140LYS10.8180.90322.8210.1930.1930.0000.0000.0000.000
109A141GLU-1-0.746-0.85622.988-0.184-0.1840.0000.0000.0000.000
110A142ALA00.0080.01622.1820.0130.0130.0000.0000.0000.000
111A143LEU0-0.040-0.02224.2860.0110.0110.0000.0000.0000.000
112A144ASP-1-0.835-0.90227.618-0.143-0.1430.0000.0000.0000.000
113A145PRO0-0.016-0.03029.622-0.004-0.0040.0000.0000.0000.000
114A146LEU0-0.044-0.00632.0280.0060.0060.0000.0000.0000.000
115A147ASN0-0.082-0.05726.2170.0120.0120.0000.0000.0000.000
116A148VAL00.0000.00426.037-0.007-0.0070.0000.0000.0000.000
117A149ASP-1-0.790-0.86829.261-0.131-0.1310.0000.0000.0000.000
118A150ILE00.0820.02629.950-0.006-0.0060.0000.0000.0000.000
119A151SER0-0.088-0.05331.730-0.004-0.0040.0000.0000.0000.000
120A152HIS10.8030.88330.6350.1500.1500.0000.0000.0000.000
121A153VAL00.0330.05226.152-0.007-0.0070.0000.0000.0000.000
122A154GLU-1-0.865-0.93224.819-0.240-0.2400.0000.0000.0000.000
123A155SER00.002-0.01128.346-0.002-0.0020.0000.0000.0000.000
124A156GLN00.003-0.02224.365-0.026-0.0260.0000.0000.0000.000
125A157SER0-0.057-0.02627.2230.0000.0000.0000.0000.0000.000
126A158ILE0-0.004-0.01524.900-0.006-0.0060.0000.0000.0000.000
127A159LEU0-0.0160.00828.0090.0150.0150.0000.0000.0000.000
128A160LEU0-0.037-0.02228.619-0.005-0.0050.0000.0000.0000.000
129A161SER00.0850.03829.6330.0120.0120.0000.0000.0000.000
130A162LYS10.9800.96732.0960.0770.0770.0000.0000.0000.000
131A163LEU0-0.026-0.00327.9400.0050.0050.0000.0000.0000.000
132A164GLU-1-0.772-0.87325.695-0.141-0.1410.0000.0000.0000.000
133A165PHE00.0540.02129.1460.0020.0020.0000.0000.0000.000
134A166ALA00.0110.00132.3040.0040.0040.0000.0000.0000.000
135A167LYS10.8200.89124.4860.1390.1390.0000.0000.0000.000
136A168TYR00.0450.01625.3270.0040.0040.0000.0000.0000.000
137A169LEU0-0.0050.01330.3400.0050.0050.0000.0000.0000.000
138A170ALA0-0.041-0.01731.1890.0060.0060.0000.0000.0000.000
139A171GLY0-0.007-0.00331.0850.0070.0070.0000.0000.0000.000
140A172LYS10.8670.93026.2910.0550.0550.0000.0000.0000.000
141A173GLY00.0310.02825.319-0.009-0.0090.0000.0000.0000.000
142A174LYS10.9310.96017.9470.2820.2820.0000.0000.0000.000
143A175ASP-1-0.886-0.94223.887-0.174-0.1740.0000.0000.0000.000
144A176PRO0-0.020-0.01626.9010.0050.0050.0000.0000.0000.000
145A177ILE00.0020.02028.227-0.010-0.0100.0000.0000.0000.000
146A178LEU0-0.010-0.00430.9420.0120.0120.0000.0000.0000.000
147A179ILE0-0.002-0.01032.757-0.008-0.0080.0000.0000.0000.000
148A180SER00.0390.02335.0020.0080.0080.0000.0000.0000.000
149A181PHE0-0.034-0.03736.953-0.003-0.0030.0000.0000.0000.000
150A182TRP00.048-0.00637.0230.0050.0050.0000.0000.0000.000
151A183PRO0-0.035-0.01441.2370.0000.0000.0000.0000.0000.000
152A184THR00.0700.03339.644-0.001-0.0010.0000.0000.0000.000
153A185ASN0-0.025-0.02539.698-0.002-0.0020.0000.0000.0000.000
154A186GLU-1-0.907-0.95238.392-0.092-0.0920.0000.0000.0000.000
155A187MET0-0.0670.01034.631-0.006-0.0060.0000.0000.0000.000
156A188LYS10.9520.97630.8550.1440.1440.0000.0000.0000.000
157A189ASN00.0540.01728.060-0.016-0.0160.0000.0000.0000.000
158A190SER00.0570.01231.3380.0060.0060.0000.0000.0000.000
159A191ASP-1-0.886-0.94432.356-0.150-0.1500.0000.0000.0000.000
160A192ASP-1-0.781-0.86833.299-0.146-0.1460.0000.0000.0000.000
161A193ARG10.9190.95435.7980.1070.1070.0000.0000.0000.000
162A194ILE00.0230.02137.5970.0000.0000.0000.0000.0000.000
163A195ALA0-0.035-0.01441.3810.0020.0020.0000.0000.0000.000
164A196PHE00.016-0.00440.4160.0010.0010.0000.0000.0000.000
165A197GLU-1-0.890-0.93646.038-0.058-0.0580.0000.0000.0000.000
166A198ASN0-0.088-0.05749.225-0.001-0.0010.0000.0000.0000.000
167A199CYS0-0.045-0.01143.650-0.005-0.0050.0000.0000.0000.000
168A200ALA00.0070.00647.983-0.003-0.0030.0000.0000.0000.000
169A201ASP-1-0.867-0.93547.110-0.070-0.0700.0000.0000.0000.000
170A203THR00.0490.02042.334-0.004-0.0040.0000.0000.0000.000
171A204THR00.006-0.02042.059-0.006-0.0060.0000.0000.0000.000
172A205PHE00.0400.02040.048-0.004-0.0040.0000.0000.0000.000
173A206GLN0-0.016-0.02437.5080.0000.0000.0000.0000.0000.000
174A207ARG10.8700.95037.3930.0840.0840.0000.0000.0000.000
175A208ALA00.0170.01337.786-0.005-0.0050.0000.0000.0000.000
176A209TRP00.006-0.00933.3600.0000.0000.0000.0000.0000.000
177A210LYS10.8650.93731.8200.1500.1500.0000.0000.0000.000
178A211MET0-0.041-0.01032.826-0.008-0.0080.0000.0000.0000.000
179A212LEU00.0310.00933.884-0.004-0.0040.0000.0000.0000.000
180A213SER0-0.036-0.02130.201-0.008-0.0080.0000.0000.0000.000
181A214LYS10.8050.89628.6390.1610.1610.0000.0000.0000.000
182A215ASN00.008-0.00530.015-0.009-0.0090.0000.0000.0000.000
183A216LEU00.0180.01131.3740.0020.0020.0000.0000.0000.000
184A217LEU00.0030.02823.7910.0000.0000.0000.0000.0000.000
185A218ALA0-0.041-0.02626.617-0.010-0.0100.0000.0000.0000.000
186A219ASP-1-0.886-0.93628.236-0.118-0.1180.0000.0000.0000.000
187A220GLY0-0.060-0.01526.5390.0080.0080.0000.0000.0000.000
188A221VAL0-0.037-0.02127.6060.0070.0070.0000.0000.0000.000
189A222LEU00.0220.01324.048-0.009-0.0090.0000.0000.0000.000
190A223THR00.0370.00528.1320.0130.0130.0000.0000.0000.000
191A224GLY00.0170.01429.233-0.012-0.0120.0000.0000.0000.000
192A225HIS0-0.0280.01130.3420.0100.0100.0000.0000.0000.000
193A226MET0-0.044-0.01233.326-0.001-0.0010.0000.0000.0000.000
194A227ASN00.0420.02435.4730.0060.0060.0000.0000.0000.000
195A228CYS00.0270.00138.3850.0020.0020.0000.0000.0000.000
196A229GLU-1-0.913-0.96241.435-0.068-0.0680.0000.0000.0000.000
197A230GLU-1-0.910-0.94235.678-0.101-0.1010.0000.0000.0000.000
198A231ASN0-0.114-0.06836.3360.0060.0060.0000.0000.0000.000
199A232PRO00.0810.04440.1960.0010.0010.0000.0000.0000.000
200A233LEU0-0.023-0.00841.4490.0010.0010.0000.0000.0000.000
201A234ILE00.0570.02736.8410.0020.0020.0000.0000.0000.000
202A236ASN0-0.030-0.01842.9850.0000.0000.0000.0000.0000.000
203A237GLU-1-0.949-0.96743.283-0.043-0.0430.0000.0000.0000.000
204A238LEU0-0.055-0.00639.5630.0010.0010.0000.0000.0000.000
205A239GLY0-0.0140.00444.2490.0000.0000.0000.0000.0000.000
206A240PHE0-0.060-0.05240.9320.0010.0010.0000.0000.0000.000
207A241GLY00.0610.02346.343-0.001-0.0010.0000.0000.0000.000
208A242GLU-1-0.875-0.95248.399-0.052-0.0520.0000.0000.0000.000
209A243LEU0-0.035-0.01743.6420.0000.0000.0000.0000.0000.000
210A244SER0-0.028-0.02145.200-0.004-0.0040.0000.0000.0000.000
211A245LYS10.9610.97246.2200.0480.0480.0000.0000.0000.000
212A246ILE00.0060.02849.5030.0020.0020.0000.0000.0000.000
213A247LYS10.9050.95351.9890.0480.0480.0000.0000.0000.000
214A248ASN00.002-0.01355.1330.0020.0020.0000.0000.0000.000
215A249HIS00.0880.04854.396-0.002-0.0020.0000.0000.0000.000
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