FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: N961Q

Calculation Name: 1O0X-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1O0X

Chain ID: A

ChEMBL ID:

UniProt ID: Q9X1I7

Base Structure: X-ray

Registration Date: 2023-06-26

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 249
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3283424.204266
FMO2-HF: Nuclear repulsion 3187515.84328
FMO2-HF: Total energy -95908.360986
FMO2-MP2: Total energy -96189.505639


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:6:MET)


Summations of interaction energy for fragment #1(A:6:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-15.06-9.2281.52-2.351-50
Interaction energy analysis for fragmet #1(A:6:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.006 / q_NPA : 0.008
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A8ARG10.7800.8522.6600.4064.5351.478-1.595-4.0120.005
4A9ILE0-0.044-0.0054.891-1.413-1.3000.004-0.025-0.0920.000
5A10LYS10.7500.8736.7000.1030.1030.0000.0000.0000.000
6A11THR00.006-0.01410.357-0.099-0.0990.0000.0000.0000.000
7A12PRO00.032-0.00412.897-0.096-0.0960.0000.0000.0000.000
8A13SER00.0060.00915.002-0.066-0.0660.0000.0000.0000.000
9A14GLU-1-0.766-0.8658.6500.5690.5690.0000.0000.0000.000
10A15ILE00.0400.01913.062-0.092-0.0920.0000.0000.0000.000
11A16GLU-1-0.814-0.89015.0630.0220.0220.0000.0000.0000.000
12A17LYS10.7600.87014.876-0.113-0.1130.0000.0000.0000.000
13A18MET00.0380.02811.8440.0100.0100.0000.0000.0000.000
14A19LYS10.8310.91315.488-0.066-0.0660.0000.0000.0000.000
15A20LYS10.8220.93219.0620.0820.0820.0000.0000.0000.000
16A21ALA0-0.001-0.01216.741-0.005-0.0050.0000.0000.0000.000
17A22GLY00.0590.02118.516-0.019-0.0190.0000.0000.0000.000
18A23LYS10.9530.97619.6400.0740.0740.0000.0000.0000.000
19A24ALA0-0.042-0.03622.2540.0040.0040.0000.0000.0000.000
20A25VAL00.0490.03119.5770.0070.0070.0000.0000.0000.000
21A26ALA00.0070.01722.8460.0050.0050.0000.0000.0000.000
22A27VAL0-0.092-0.04925.1450.0090.0090.0000.0000.0000.000
23A28ALA00.005-0.00225.7290.0070.0070.0000.0000.0000.000
24A29LEU00.0900.04323.9100.0090.0090.0000.0000.0000.000
25A30ARG10.8410.93027.7680.1130.1130.0000.0000.0000.000
26A31GLU-1-0.837-0.91030.672-0.092-0.0920.0000.0000.0000.000
27A32VAL00.0310.02329.6030.0080.0080.0000.0000.0000.000
28A33ARG10.9881.00732.4610.1130.1130.0000.0000.0000.000
29A34LYS10.7830.87434.3880.1010.1010.0000.0000.0000.000
30A35VAL0-0.040-0.01934.5500.0060.0060.0000.0000.0000.000
31A36ILE0-0.0280.00632.403-0.002-0.0020.0000.0000.0000.000
32A37VAL00.0040.00237.0110.0050.0050.0000.0000.0000.000
33A38PRO00.0670.01740.715-0.005-0.0050.0000.0000.0000.000
34A39GLY0-0.039-0.00642.7580.0040.0040.0000.0000.0000.000
35A40LYS10.8140.92338.7040.1120.1120.0000.0000.0000.000
36A41THR00.001-0.02637.618-0.005-0.0050.0000.0000.0000.000
37A42ALA00.0660.02832.337-0.002-0.0020.0000.0000.0000.000
38A43TRP00.0280.03031.772-0.009-0.0090.0000.0000.0000.000
39A44ASP-1-0.836-0.88833.773-0.128-0.1280.0000.0000.0000.000
40A45VAL00.0300.01529.7170.0040.0040.0000.0000.0000.000
41A46GLU-1-0.692-0.84327.474-0.258-0.2580.0000.0000.0000.000
42A47THR0-0.068-0.05129.718-0.001-0.0010.0000.0000.0000.000
43A48LEU00.0150.00931.8380.0040.0040.0000.0000.0000.000
44A49VAL00.0320.01525.6540.0060.0060.0000.0000.0000.000
45A50LEU0-0.037-0.02026.398-0.001-0.0010.0000.0000.0000.000
46A51GLU-1-0.881-0.92528.433-0.108-0.1080.0000.0000.0000.000
47A52ILE0-0.033-0.01327.2720.0120.0120.0000.0000.0000.000
48A53PHE00.0360.01022.4460.0140.0140.0000.0000.0000.000
49A54LYS10.9951.00725.9660.1320.1320.0000.0000.0000.000
50A55LYS10.8450.91527.9800.1210.1210.0000.0000.0000.000
51A56LEU0-0.035-0.00925.6390.0170.0170.0000.0000.0000.000
52A57ARG10.8170.90624.8840.0870.0870.0000.0000.0000.000
53A58VAL0-0.0040.01719.9720.0080.0080.0000.0000.0000.000
54A59LYS10.9150.95118.0890.2850.2850.0000.0000.0000.000
55A60PRO00.0270.02019.769-0.015-0.0150.0000.0000.0000.000
56A61ALA0-0.023-0.02415.901-0.002-0.0020.0000.0000.0000.000
57A62PHE00.0550.03917.292-0.043-0.0430.0000.0000.0000.000
58A63LYS10.7880.90319.4910.2460.2460.0000.0000.0000.000
59A64GLY0-0.017-0.01520.6830.0030.0030.0000.0000.0000.000
60A65TYR0-0.064-0.03712.431-0.040-0.0400.0000.0000.0000.000
61A66GLY00.0530.02917.3940.0050.0050.0000.0000.0000.000
62A67GLY0-0.013-0.00718.2800.0350.0350.0000.0000.0000.000
63A68TYR00.020-0.00620.8630.0570.0570.0000.0000.0000.000
64A69LYS10.9020.95022.6080.3180.3180.0000.0000.0000.000
65A70TYR0-0.055-0.01924.7010.0280.0280.0000.0000.0000.000
66A71ALA0-0.043-0.04723.213-0.029-0.0290.0000.0000.0000.000
67A72THR0-0.043-0.01823.137-0.007-0.0070.0000.0000.0000.000
68A73CYS00.0280.05823.408-0.009-0.0090.0000.0000.0000.000
69A74VAL0-0.027-0.03025.6800.0120.0120.0000.0000.0000.000
70A75SER0-0.008-0.00726.8120.0010.0010.0000.0000.0000.000
71A76VAL0-0.008-0.01729.8310.0060.0060.0000.0000.0000.000
72A77ASN00.012-0.01133.2420.0000.0000.0000.0000.0000.000
73A78GLU-1-0.820-0.90532.666-0.194-0.1940.0000.0000.0000.000
74A79GLU-1-0.823-0.88530.024-0.234-0.2340.0000.0000.0000.000
75A80VAL0-0.012-0.02225.0350.0020.0020.0000.0000.0000.000
76A81VAL0-0.002-0.01322.139-0.004-0.0040.0000.0000.0000.000
77A82HIS00.020-0.01719.6260.0340.0340.0000.0000.0000.000
78A83GLY00.0590.05024.5590.0100.0100.0000.0000.0000.000
79A84LEU00.0040.00527.023-0.003-0.0030.0000.0000.0000.000
80A85PRO0-0.038-0.01127.8990.0200.0200.0000.0000.0000.000
81A86LEU00.005-0.01530.9080.0100.0100.0000.0000.0000.000
82A87LYS10.9570.97734.0510.1480.1480.0000.0000.0000.000
83A88GLU-1-0.893-0.95637.457-0.149-0.1490.0000.0000.0000.000
84A89LYS10.7860.88631.1980.2250.2250.0000.0000.0000.000
85A90VAL0-0.018-0.01037.068-0.001-0.0010.0000.0000.0000.000
86A91PHE00.0150.02034.134-0.002-0.0020.0000.0000.0000.000
87A92LYS10.8620.90939.5080.1380.1380.0000.0000.0000.000
88A93GLU-1-0.832-0.93641.147-0.098-0.0980.0000.0000.0000.000
89A94GLY00.0240.00841.7300.0000.0000.0000.0000.0000.000
90A95ASP-1-0.836-0.89537.249-0.143-0.1430.0000.0000.0000.000
91A96ILE0-0.0060.00532.9020.0030.0030.0000.0000.0000.000
92A97VAL0-0.021-0.01731.943-0.008-0.0080.0000.0000.0000.000
93A98SER00.017-0.00827.3320.0070.0070.0000.0000.0000.000
94A99VAL0-0.072-0.03926.647-0.002-0.0020.0000.0000.0000.000
95A100ASP-1-0.818-0.90720.979-0.432-0.4320.0000.0000.0000.000
96A101VAL0-0.066-0.04521.9460.0150.0150.0000.0000.0000.000
97A102GLY00.1910.11018.042-0.010-0.0100.0000.0000.0000.000
98A103ALA0-0.131-0.06217.8100.0320.0320.0000.0000.0000.000
99A104VAL0-0.0080.00213.946-0.017-0.0170.0000.0000.0000.000
100A105TYR0-0.012-0.01915.9490.0440.0440.0000.0000.0000.000
101A106GLN0-0.053-0.04115.7940.0240.0240.0000.0000.0000.000
102A107GLY00.0150.00812.6120.0400.0400.0000.0000.0000.000
103A108LEU0-0.043-0.00910.006-0.059-0.0590.0000.0000.0000.000
104A109TYR0-0.004-0.02210.6420.0580.0580.0000.0000.0000.000
105A110GLY0-0.024-0.00413.3580.0490.0490.0000.0000.0000.000
106A111ASP-1-0.788-0.91615.369-0.619-0.6190.0000.0000.0000.000
107A112ALA0-0.020-0.00517.4130.0250.0250.0000.0000.0000.000
108A113ALA00.0710.04020.703-0.007-0.0070.0000.0000.0000.000
109A114VAL0-0.065-0.02623.6730.0180.0180.0000.0000.0000.000
110A115THR00.0500.03427.287-0.010-0.0100.0000.0000.0000.000
111A116TYR0-0.092-0.07830.1750.0160.0160.0000.0000.0000.000
112A117ILE00.0270.01633.666-0.007-0.0070.0000.0000.0000.000
113A118VAL0-0.055-0.01637.0280.0050.0050.0000.0000.0000.000
114A119GLY00.0080.01639.5410.0030.0030.0000.0000.0000.000
115A120GLU-1-0.895-0.93642.000-0.087-0.0870.0000.0000.0000.000
116A121THR0-0.026-0.02238.985-0.002-0.0020.0000.0000.0000.000
117A122ASP-1-0.809-0.86041.048-0.107-0.1070.0000.0000.0000.000
118A123GLU-1-0.804-0.91541.170-0.088-0.0880.0000.0000.0000.000
119A124ARG10.8810.95735.4020.1220.1220.0000.0000.0000.000
120A125GLY00.0560.01837.077-0.007-0.0070.0000.0000.0000.000
121A126LYS10.7820.85036.3680.0780.0780.0000.0000.0000.000
122A127GLU-1-0.923-0.95335.623-0.102-0.1020.0000.0000.0000.000
123A128LEU00.0230.02531.225-0.003-0.0030.0000.0000.0000.000
124A129VAL00.0070.00331.768-0.011-0.0110.0000.0000.0000.000
125A130ARG10.7650.87731.5330.0940.0940.0000.0000.0000.000
126A131VAL00.0280.01129.8670.0000.0000.0000.0000.0000.000
127A132THR0-0.023-0.01626.426-0.009-0.0090.0000.0000.0000.000
128A133ARG10.8320.90626.9890.1130.1130.0000.0000.0000.000
129A134GLU-1-0.796-0.89327.749-0.104-0.1040.0000.0000.0000.000
130A135VAL0-0.0040.01224.5030.0060.0060.0000.0000.0000.000
131A136LEU0-0.0010.02121.400-0.004-0.0040.0000.0000.0000.000
132A137GLU-1-0.910-0.95523.579-0.082-0.0820.0000.0000.0000.000
133A138LYS10.7770.86325.3010.1200.1200.0000.0000.0000.000
134A139ALA00.0400.00520.5470.0150.0150.0000.0000.0000.000
135A140ILE0-0.008-0.01520.3690.0110.0110.0000.0000.0000.000
136A141LYS10.8240.91121.4900.0920.0920.0000.0000.0000.000
137A142MET0-0.083-0.01419.8360.0160.0160.0000.0000.0000.000
138A143ILE00.0240.02116.0370.0150.0150.0000.0000.0000.000
139A144LYS10.9560.97017.517-0.039-0.0390.0000.0000.0000.000
140A145PRO0-0.052-0.02514.805-0.003-0.0030.0000.0000.0000.000
141A146GLY0-0.050-0.03414.285-0.008-0.0080.0000.0000.0000.000
142A147ILE0-0.0110.01815.7600.0030.0030.0000.0000.0000.000
143A148ARG10.8570.91312.446-0.069-0.0690.0000.0000.0000.000
144A149LEU00.0550.02110.1510.0050.0050.0000.0000.0000.000
145A150GLY00.0250.02213.700-0.021-0.0210.0000.0000.0000.000
146A151ASP-1-0.807-0.91416.083-0.034-0.0340.0000.0000.0000.000
147A152VAL0-0.009-0.00916.1470.0130.0130.0000.0000.0000.000
148A153SER0-0.034-0.02116.1460.0050.0050.0000.0000.0000.000
149A154HIS0-0.019-0.01118.3990.0280.0280.0000.0000.0000.000
150A155CYS00.0260.02221.1660.0200.0200.0000.0000.0000.000
151A156ILE0-0.0180.00319.2560.0130.0130.0000.0000.0000.000
152A157GLN0-0.016-0.02122.380-0.007-0.0070.0000.0000.0000.000
153A158GLU-1-0.858-0.92424.121-0.093-0.0930.0000.0000.0000.000
154A159THR00.002-0.00826.1590.0140.0140.0000.0000.0000.000
155A160VAL0-0.012-0.00425.9590.0090.0090.0000.0000.0000.000
156A161GLU-1-0.832-0.91526.797-0.172-0.1720.0000.0000.0000.000
157A162SER0-0.114-0.03930.0100.0130.0130.0000.0000.0000.000
158A163VAL0-0.036-0.03032.0110.0100.0100.0000.0000.0000.000
159A164GLY0-0.0070.00833.4600.0020.0020.0000.0000.0000.000
160A165PHE0-0.040-0.00730.766-0.002-0.0020.0000.0000.0000.000
161A166ASN0-0.008-0.01428.3030.0020.0020.0000.0000.0000.000
162A167VAL0-0.017-0.00923.055-0.005-0.0050.0000.0000.0000.000
163A168ILE00.001-0.00922.4050.0060.0060.0000.0000.0000.000
164A169ARG10.8540.91220.7780.2350.2350.0000.0000.0000.000
165A170ASP-1-0.883-0.94119.482-0.397-0.3970.0000.0000.0000.000
166A171TYR00.0140.01118.335-0.035-0.0350.0000.0000.0000.000
167A172VAL0-0.073-0.03613.5990.0480.0480.0000.0000.0000.000
168A173GLY00.1230.06015.106-0.024-0.0240.0000.0000.0000.000
169A174HIS0-0.032-0.02010.342-0.253-0.2530.0000.0000.0000.000
170A175GLY00.0520.0388.6470.3000.3000.0000.0000.0000.000
171A176VAL00.0110.0139.611-0.130-0.1300.0000.0000.0000.000
172A177GLY00.010-0.0387.8600.2420.2420.0000.0000.0000.000
173A178ARG10.8230.8955.8210.2080.2080.0000.0000.0000.000
174A179GLU-1-0.843-0.8924.644-3.922-3.878-0.001-0.007-0.0350.000
175A180LEU0-0.020-0.0118.2930.0690.0690.0000.0000.0000.000
176A181HIS00.0680.0489.8480.0450.0450.0000.0000.0000.000
177A182GLU-1-0.730-0.8255.091-1.349-1.3490.0000.0000.0000.000
178A183ASP-1-0.859-0.9113.390-8.686-7.1400.039-0.724-0.861-0.005
179A184PRO0-0.103-0.0745.6680.5930.5930.0000.0000.0000.000
180A185GLN00.0430.0046.9470.2990.2990.0000.0000.0000.000
181A186ILE0-0.081-0.05110.1000.1280.1280.0000.0000.0000.000
182A187PRO00.0560.04713.1330.0480.0480.0000.0000.0000.000
183A188ASN0-0.005-0.00816.1000.0430.0430.0000.0000.0000.000
184A189TYR00.0310.01518.1490.0510.0510.0000.0000.0000.000
185A190GLY00.008-0.00218.126-0.050-0.0500.0000.0000.0000.000
186A191THR0-0.0250.00118.3020.0350.0350.0000.0000.0000.000
187A192PRO00.0650.04018.527-0.007-0.0070.0000.0000.0000.000
188A193GLY0-0.017-0.01618.4260.0090.0090.0000.0000.0000.000
189A194THR0-0.074-0.04115.6250.0150.0150.0000.0000.0000.000
190A195GLY00.0740.03511.500-0.040-0.0400.0000.0000.0000.000
191A196VAL00.0130.0026.3630.1770.1770.0000.0000.0000.000
192A197VAL0-0.038-0.0069.510-0.031-0.0310.0000.0000.0000.000
193A198LEU00.0240.0199.5780.0570.0570.0000.0000.0000.000
194A199ARG10.9310.9409.286-0.509-0.5090.0000.0000.0000.000
195A200LYS10.9020.93211.724-0.412-0.4120.0000.0000.0000.000
196A201GLY00.009-0.00812.0230.1420.1420.0000.0000.0000.000
197A202MET0-0.0040.0446.6540.0160.0160.0000.0000.0000.000
198A203THR0-0.077-0.05210.191-0.015-0.0150.0000.0000.0000.000
199A204LEU00.000-0.00610.071-0.169-0.1690.0000.0000.0000.000
200A205ALA00.0500.04913.0790.1290.1290.0000.0000.0000.000
201A206ILE0-0.044-0.02615.242-0.060-0.0600.0000.0000.0000.000
202A207GLU-1-0.756-0.89017.309-0.548-0.5480.0000.0000.0000.000
203A208PRO00.0070.02519.786-0.013-0.0130.0000.0000.0000.000
204A209MET0-0.0050.01719.2600.0190.0190.0000.0000.0000.000
205A210VAL0-0.032-0.02424.1000.0000.0000.0000.0000.0000.000
206A211SER00.1030.03027.3230.0090.0090.0000.0000.0000.000
207A212GLU-1-0.852-0.90830.137-0.132-0.1320.0000.0000.0000.000
208A213GLY00.007-0.00332.7580.0130.0130.0000.0000.0000.000
209A214ASP-1-0.816-0.89230.888-0.198-0.1980.0000.0000.0000.000
210A215TRP0-0.0140.00124.833-0.011-0.0110.0000.0000.0000.000
211A216ARG10.8350.90726.6740.1650.1650.0000.0000.0000.000
212A217VAL00.0290.00924.8520.0110.0110.0000.0000.0000.000
213A218VAL0-0.034-0.01227.673-0.003-0.0030.0000.0000.0000.000
214A219VAL0-0.024-0.00325.082-0.001-0.0010.0000.0000.0000.000
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