FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: NN84Q

Calculation Name: 1ZTP-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1ZTP

Chain ID: A

ChEMBL ID:

UniProt ID: Q9H3H3

Base Structure: X-ray

Registration Date: 2023-09-23

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 234
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2670963.115411
FMO2-HF: Nuclear repulsion 2581574.970752
FMO2-HF: Total energy -89388.144658
FMO2-MP2: Total energy -89650.689882


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:17:GLU)


Summations of interaction energy for fragment #1(A:17:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
20.14523.0490.995-1.251-2.6490.002
Interaction energy analysis for fragmet #1(A:17:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.963 / q_NPA : -1.000
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A19GLY00.0150.0173.880-4.509-3.072-0.007-0.625-0.8060.002
4A20PHE0-0.040-0.0282.270-2.956-1.6521.003-0.604-1.7030.000
5A21THR0-0.053-0.0304.728-2.095-1.932-0.001-0.022-0.1400.000
6A22ALA00.0080.0016.909-1.321-1.3210.0000.0000.0000.000
7A23GLU-1-0.919-0.97310.30321.91121.9110.0000.0000.0000.000
8A24HIS0-0.051-0.0248.044-0.935-0.9350.0000.0000.0000.000
9A25LEU0-0.011-0.0107.666-1.657-1.6570.0000.0000.0000.000
10A26ALA0-0.041-0.01510.772-1.391-1.3910.0000.0000.0000.000
11A27ALA0-0.036-0.02013.548-1.268-1.2680.0000.0000.0000.000
12A28GLU-1-0.896-0.94011.24620.78820.7880.0000.0000.0000.000
13A29ALA0-0.022-0.00513.753-0.675-0.6750.0000.0000.0000.000
14A30MET0-0.060-0.01716.059-1.112-1.1120.0000.0000.0000.000
15A31ALA00.000-0.01719.235-0.053-0.0530.0000.0000.0000.000
16A32ALA0-0.047-0.03522.532-0.223-0.2230.0000.0000.0000.000
17A33ASP-1-0.857-0.93226.1199.5919.5910.0000.0000.0000.000
18A34MET00.0080.01920.3150.2190.2190.0000.0000.0000.000
19A35ASP-1-0.786-0.84825.80110.39310.3930.0000.0000.0000.000
20A36PRO00.0130.00628.944-0.004-0.0040.0000.0000.0000.000
21A37TRP0-0.047-0.04630.510-0.340-0.3400.0000.0000.0000.000
22A38LEU00.0110.01833.806-0.011-0.0110.0000.0000.0000.000
23A39VAL0-0.017-0.02034.875-0.100-0.1000.0000.0000.0000.000
24A40PHE00.0320.02538.156-0.074-0.0740.0000.0000.0000.000
25A41ASP-1-0.744-0.85038.1868.2758.2750.0000.0000.0000.000
26A42ALA00.0420.02240.639-0.054-0.0540.0000.0000.0000.000
27A43ARG10.7170.83435.505-8.625-8.6250.0000.0000.0000.000
28A44THR0-0.049-0.03538.3600.0220.0220.0000.0000.0000.000
29A45THR0-0.018-0.01041.4770.0270.0270.0000.0000.0000.000
30A46PRO00.0220.01744.132-0.071-0.0710.0000.0000.0000.000
31A47ALA00.0470.01147.990-0.005-0.0050.0000.0000.0000.000
32A48THR0-0.021-0.01449.368-0.030-0.0300.0000.0000.0000.000
33A49GLU-1-0.914-0.95947.4266.6606.6600.0000.0000.0000.000
34A50LEU0-0.0200.00946.1460.0590.0590.0000.0000.0000.000
35A51ASP-1-0.779-0.87948.2826.0826.0820.0000.0000.0000.000
36A52ALA00.0010.00849.588-0.038-0.0380.0000.0000.0000.000
37A53TRP0-0.018-0.01340.626-0.039-0.0390.0000.0000.0000.000
38A54LEU0-0.024-0.02146.0180.0760.0760.0000.0000.0000.000
39A55ALA0-0.031-0.01147.8120.0000.0000.0000.0000.0000.000
40A56LYS10.8900.95842.784-7.304-7.3040.0000.0000.0000.000
41A57TYR00.0060.00241.2560.0970.0970.0000.0000.0000.000
42A58PRO00.0440.03744.6500.0700.0700.0000.0000.0000.000
43A59PRO00.0340.00643.7140.0720.0720.0000.0000.0000.000
44A60SER0-0.105-0.07644.5110.0950.0950.0000.0000.0000.000
45A61GLN0-0.029-0.01645.949-0.030-0.0300.0000.0000.0000.000
46A62VAL00.0390.02839.8260.0760.0760.0000.0000.0000.000
47A63THR0-0.024-0.01540.1870.0860.0860.0000.0000.0000.000
48A64ARG10.7340.83330.368-9.406-9.4060.0000.0000.0000.000
49A65TYR0-0.025-0.03332.4620.1660.1660.0000.0000.0000.000
50A66GLY00.0730.06835.9440.0930.0930.0000.0000.0000.000
51A67ASP-1-0.813-0.88638.1257.7857.7850.0000.0000.0000.000
52A68PRO00.0190.00140.680-0.111-0.1110.0000.0000.0000.000
53A69GLY00.0060.00743.440-0.140-0.1400.0000.0000.0000.000
54A70SER0-0.0340.00141.543-0.104-0.1040.0000.0000.0000.000
55A71PRO0-0.056-0.01542.8780.0200.0200.0000.0000.0000.000
56A72ASN0-0.068-0.06537.414-0.141-0.1410.0000.0000.0000.000
57A73SER00.004-0.02136.507-0.154-0.1540.0000.0000.0000.000
58A74GLU-1-0.853-0.90032.7319.2909.2900.0000.0000.0000.000
59A75PRO00.0060.00231.478-0.284-0.2840.0000.0000.0000.000
60A76VAL0-0.029-0.00833.1520.1080.1080.0000.0000.0000.000
61A77GLY00.0130.01231.955-0.160-0.1600.0000.0000.0000.000
62A78TRP0-0.081-0.06032.730-0.434-0.4340.0000.0000.0000.000
63A79ILE00.0280.02535.7030.0620.0620.0000.0000.0000.000
64A80ALA0-0.047-0.03736.786-0.036-0.0360.0000.0000.0000.000
65A81VAL00.0040.00038.843-0.060-0.0600.0000.0000.0000.000
66A82TYR0-0.006-0.00134.3140.0650.0650.0000.0000.0000.000
67A83GLY00.0960.04140.506-0.113-0.1130.0000.0000.0000.000
68A84GLN0-0.009-0.02242.0680.1970.1970.0000.0000.0000.000
69A85GLY00.0310.01742.271-0.090-0.0900.0000.0000.0000.000
70A86TYR0-0.022-0.00533.7220.1230.1230.0000.0000.0000.000
71A87SER00.008-0.00135.5370.1310.1310.0000.0000.0000.000
72A88PRO0-0.029-0.00231.061-0.133-0.1330.0000.0000.0000.000
73A89ASN00.025-0.00132.8120.2080.2080.0000.0000.0000.000
74A90SER0-0.033-0.00630.198-0.311-0.3110.0000.0000.0000.000
75A91GLY00.0430.02432.306-0.013-0.0130.0000.0000.0000.000
76A92ASP-1-0.823-0.91827.53111.43211.4320.0000.0000.0000.000
77A93VAL0-0.032-0.03526.607-0.171-0.1710.0000.0000.0000.000
78A94GLN00.0320.02722.1990.4910.4910.0000.0000.0000.000
79A95GLY00.0320.01525.514-0.004-0.0040.0000.0000.0000.000
80A96LEU0-0.072-0.04228.305-0.270-0.2700.0000.0000.0000.000
81A97GLN0-0.041-0.04224.9870.0300.0300.0000.0000.0000.000
82A98ALA00.0650.04425.385-0.109-0.1090.0000.0000.0000.000
83A99ALA0-0.021-0.02026.906-0.242-0.2420.0000.0000.0000.000
84A100TRP0-0.021-0.01629.434-0.502-0.5020.0000.0000.0000.000
85A101GLU-1-0.889-0.94924.50311.54011.5400.0000.0000.0000.000
86A102ALA00.0350.02928.975-0.183-0.1830.0000.0000.0000.000
87A103LEU0-0.029-0.00930.720-0.351-0.3510.0000.0000.0000.000
88A104GLN0-0.037-0.03031.226-0.090-0.0900.0000.0000.0000.000
89A105THR0-0.026-0.01029.804-0.127-0.1270.0000.0000.0000.000
90A106SER0-0.070-0.04632.222-0.192-0.1920.0000.0000.0000.000
91A107GLY0-0.0130.00435.511-0.241-0.2410.0000.0000.0000.000
92A108ARG10.9230.96637.663-7.518-7.5180.0000.0000.0000.000
93A109PRO0-0.018-0.00839.3360.0670.0670.0000.0000.0000.000
94A110ILE00.0220.02135.528-0.031-0.0310.0000.0000.0000.000
95A111THR0-0.004-0.00739.852-0.155-0.1550.0000.0000.0000.000
96A112PRO00.0660.02140.9510.1590.1590.0000.0000.0000.000
97A113GLY00.0160.02242.2250.0580.0580.0000.0000.0000.000
98A114THR00.015-0.00238.8380.0980.0980.0000.0000.0000.000
99A115LEU00.0160.01236.1240.1690.1690.0000.0000.0000.000
100A116ARG10.9050.96138.364-6.658-6.6580.0000.0000.0000.000
101A117GLN00.0140.00240.2890.0910.0910.0000.0000.0000.000
102A118LEU00.0040.01833.6270.0820.0820.0000.0000.0000.000
103A119ALA00.013-0.00135.8450.1850.1850.0000.0000.0000.000
104A120ILE00.010-0.00137.2360.0690.0690.0000.0000.0000.000
105A121THR0-0.052-0.02835.2860.0060.0060.0000.0000.0000.000
106A122HIS00.0080.00731.5640.1380.1380.0000.0000.0000.000
107A123HIS00.001-0.00233.6040.1300.1300.0000.0000.0000.000
108A124VAL0-0.058-0.00931.7740.0370.0370.0000.0000.0000.000
109A125LEU0-0.012-0.01934.934-0.088-0.0880.0000.0000.0000.000
110A126SER00.0370.02035.915-0.157-0.1570.0000.0000.0000.000
111A127GLY0-0.004-0.01938.1180.0650.0650.0000.0000.0000.000
112A128LYS10.7530.88536.039-8.383-8.3830.0000.0000.0000.000
113A129TRP0-0.011-0.00141.248-0.041-0.0410.0000.0000.0000.000
114A130LEU0-0.043-0.01139.7790.1570.1570.0000.0000.0000.000
115A131MET00.0050.01443.950-0.251-0.2510.0000.0000.0000.000
116A132HIS00.0550.03145.0060.1510.1510.0000.0000.0000.000
117A133LEU0-0.038-0.01846.720-0.204-0.2040.0000.0000.0000.000
118A134ALA00.0140.01547.2070.1340.1340.0000.0000.0000.000
119A135PRO00.0260.02246.566-0.088-0.0880.0000.0000.0000.000
120A136GLY00.0410.01148.421-0.116-0.1160.0000.0000.0000.000
121A137PHE00.0490.02351.2610.0560.0560.0000.0000.0000.000
122A138LYS10.9440.96453.334-5.489-5.4890.0000.0000.0000.000
123A139LEU00.0150.02145.457-0.011-0.0110.0000.0000.0000.000
124A140ASP-1-0.754-0.85448.6456.4646.4640.0000.0000.0000.000
125A141HIS0-0.028-0.00749.9770.0270.0270.0000.0000.0000.000
126A142ALA0-0.011-0.01349.9440.0040.0040.0000.0000.0000.000
127A143TRP00.0130.00741.7150.0220.0220.0000.0000.0000.000
128A144ALA00.0330.01447.8530.0510.0510.0000.0000.0000.000
129A145GLY0-0.011-0.00750.047-0.024-0.0240.0000.0000.0000.000
130A146ILE0-0.017-0.02045.950-0.005-0.0050.0000.0000.0000.000
131A147ALA00.0100.01045.9080.0730.0730.0000.0000.0000.000
132A148ARG10.8480.88546.889-5.942-5.9420.0000.0000.0000.000
133A149ALA00.0110.00449.483-0.008-0.0080.0000.0000.0000.000
134A150VAL0-0.060-0.02243.0910.0050.0050.0000.0000.0000.000
135A151VAL0-0.023-0.00745.7000.0550.0550.0000.0000.0000.000
136A152GLU-1-0.868-0.91647.5125.9135.9130.0000.0000.0000.000
137A153GLY0-0.0120.00947.562-0.080-0.0800.0000.0000.0000.000
138A154ARG10.7890.87148.651-5.976-5.9760.0000.0000.0000.000
139A155LEU0-0.036-0.01245.7940.0030.0030.0000.0000.0000.000
140A156GLN00.009-0.00741.4050.1640.1640.0000.0000.0000.000
141A157VAL00.009-0.00437.6160.1520.1520.0000.0000.0000.000
142A158ALA0-0.0110.00441.046-0.118-0.1180.0000.0000.0000.000
143A159LYS10.8850.95033.710-8.831-8.8310.0000.0000.0000.000
144A160VAL00.0070.00540.128-0.195-0.1950.0000.0000.0000.000
145A161SER00.0160.02438.3460.1320.1320.0000.0000.0000.000
146A162PRO00.0260.02737.161-0.271-0.2710.0000.0000.0000.000
147A163ARG10.8900.94039.870-6.616-6.6160.0000.0000.0000.000
148A164ALA00.0310.02039.8850.1740.1740.0000.0000.0000.000
149A165LYS10.8190.89837.288-8.254-8.2540.0000.0000.0000.000
150A166GLU-1-0.891-0.94941.1507.3357.3350.0000.0000.0000.000
151A167GLY0-0.039-0.01344.450-0.148-0.1480.0000.0000.0000.000
152A168GLY00.0000.00043.8970.0720.0720.0000.0000.0000.000
153A169ARG10.8040.87143.883-6.551-6.5510.0000.0000.0000.000
154A170GLN0-0.028-0.02142.1250.0510.0510.0000.0000.0000.000
155A171VAL0-0.013-0.01939.577-0.201-0.2010.0000.0000.0000.000
156A172ILE00.0290.00642.2430.0700.0700.0000.0000.0000.000
157A173CYS0-0.064-0.03638.460-0.083-0.0830.0000.0000.0000.000
158A174VAL00.0370.01141.7730.0160.0160.0000.0000.0000.000
159A175TYR00.010-0.00935.261-0.005-0.0050.0000.0000.0000.000
160A176THR0-0.045-0.01841.241-0.160-0.1600.0000.0000.0000.000
161A177ASP-1-0.759-0.87639.8267.4957.4950.0000.0000.0000.000
162A178ASP-1-0.762-0.85540.1407.4737.4730.0000.0000.0000.000
163A179PHE0-0.0340.00038.968-0.170-0.1700.0000.0000.0000.000
164A180THR0-0.127-0.09442.643-0.216-0.2160.0000.0000.0000.000
165A181ASP-1-0.747-0.86545.3486.1996.1990.0000.0000.0000.000
166A182ARG10.9330.95648.080-5.668-5.6680.0000.0000.0000.000
167A183LEU0-0.036-0.00950.528-0.067-0.0670.0000.0000.0000.000
168A184GLY00.1160.05148.319-0.042-0.0420.0000.0000.0000.000
169A185VAL0-0.032-0.00946.1170.0220.0220.0000.0000.0000.000
170A186LEU00.004-0.00448.655-0.034-0.0340.0000.0000.0000.000
171A187GLU-1-0.900-0.93951.3095.9205.9200.0000.0000.0000.000
172A188ALA00.0400.01247.545-0.026-0.0260.0000.0000.0000.000
173A189ASP-1-0.805-0.84149.5745.8765.8760.0000.0000.0000.000
174A190SER00.001-0.01651.697-0.107-0.1070.0000.0000.0000.000
175A191ALA0-0.0020.00450.654-0.092-0.0920.0000.0000.0000.000
176A192ILE0-0.007-0.00347.515-0.019-0.0190.0000.0000.0000.000
177A193ARG10.7300.82351.682-5.927-5.9270.0000.0000.0000.000
178A194ALA0-0.0090.00355.368-0.088-0.0880.0000.0000.0000.000
179A195ALA0-0.0020.02152.613-0.058-0.0580.0000.0000.0000.000
180A196GLY0-0.006-0.00654.546-0.020-0.0200.0000.0000.0000.000
181A197ILE0-0.046-0.01350.677-0.064-0.0640.0000.0000.0000.000
182A198LYS10.9320.96654.064-5.286-5.2860.0000.0000.0000.000
183A199CYS0-0.059-0.02150.772-0.054-0.0540.0000.0000.0000.000
184A200LEU0-0.025-0.00949.486-0.034-0.0340.0000.0000.0000.000
185A201LEU00.0240.02748.5080.0890.0890.0000.0000.0000.000
186A202THR0-0.030-0.03244.986-0.079-0.0790.0000.0000.0000.000
187A203TYR00.0760.01642.0520.1370.1370.0000.0000.0000.000
188A204LYS10.8260.90836.533-8.118-8.1180.0000.0000.0000.000
189A205PRO00.0320.02538.5660.1270.1270.0000.0000.0000.000
190A206ASP-1-0.772-0.86133.9268.7368.7360.0000.0000.0000.000
191A207VAL00.0430.03733.6690.2520.2520.0000.0000.0000.000
192A208TYR0-0.019-0.02433.7650.1450.1450.0000.0000.0000.000
193A209THR0-0.053-0.03131.497-0.096-0.0960.0000.0000.0000.000
194A210TYR00.0630.01328.4170.2600.2600.0000.0000.0000.000
195A211LEU00.0110.02328.8310.3250.3250.0000.0000.0000.000
196A212GLY00.0240.02530.748-0.039-0.0390.0000.0000.0000.000
197A213ILE0-0.0160.02431.398-0.229-0.2290.0000.0000.0000.000
198A214TYR0-0.011-0.01929.840-0.304-0.3040.0000.0000.0000.000
199A215ARG10.9810.97535.942-8.255-8.2550.0000.0000.0000.000
200A216ALA00.0050.01036.916-0.180-0.1800.0000.0000.0000.000
201A217ASN00.0040.00236.8720.1890.1890.0000.0000.0000.000
202A218ARG11.0291.02031.339-9.225-9.2250.0000.0000.0000.000
203A219TRP00.0090.00431.596-0.184-0.1840.0000.0000.0000.000
204A220HIS0-0.057-0.03138.479-0.274-0.2740.0000.0000.0000.000
205A221LEU00.0000.01337.947-0.197-0.1970.0000.0000.0000.000
206A222CYS0-0.0100.00241.2750.0290.0290.0000.0000.0000.000
207A223PRO0-0.028-0.01139.5510.0570.0570.0000.0000.0000.000
208A224THR0-0.031-0.02840.5370.2070.2070.0000.0000.0000.000
209A225LEU00.0180.02843.041-0.080-0.0800.0000.0000.0000.000
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