FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: NNQGQ

Calculation Name: 4AE7-A-Xray372

Preferred Name:
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Target Type:
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Ligand Name:
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ligand 3-letter code:
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PDB ID: 4AE7

Chain ID: A

ChEMBL ID:
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UniProt ID: Q8N1Q8

Base Structure: X-ray

Registration Date: 2023-09-23

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 186
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2046618.517382
FMO2-HF: Nuclear repulsion 1971838.043537
FMO2-HF: Total energy -74780.473845
FMO2-MP2: Total energy -74994.947956


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:52:LEU)


Summations of interaction energy for fragment #1(A:52:LEU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-5.965-2.8781.715-1.742-3.061-0.009
Interaction energy analysis for fragmet #1(A:52:LEU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.014 / q_NPA : -0.004
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A54ASP-1-0.716-0.8453.7770.7202.2070.002-0.560-0.9290.002
4A55TYR0-0.003-0.0135.917-0.271-0.2710.0000.0000.0000.000
5A56ALA00.0110.0209.211-0.028-0.0280.0000.0000.0000.000
6A57LEU0-0.062-0.0328.962-0.138-0.1380.0000.0000.0000.000
7A58PRO00.0070.00612.4510.0560.0560.0000.0000.0000.000
8A59ASN0-0.044-0.00913.426-0.044-0.0440.0000.0000.0000.000
9A60ALA00.0080.00415.311-0.008-0.0080.0000.0000.0000.000
10A61SER0-0.015-0.00817.5200.0050.0050.0000.0000.0000.000
11A62TRP0-0.050-0.02814.449-0.032-0.0320.0000.0000.0000.000
12A63CYS00.0170.01720.343-0.023-0.0230.0000.0000.0000.000
13A64SER00.028-0.01423.786-0.006-0.0060.0000.0000.0000.000
14A65ASP-1-0.824-0.90825.7910.0070.0070.0000.0000.0000.000
15A66MET00.0040.01317.825-0.006-0.0060.0000.0000.0000.000
16A67LEU00.0050.00619.557-0.012-0.0120.0000.0000.0000.000
17A68SER0-0.033-0.00721.953-0.016-0.0160.0000.0000.0000.000
18A69LEU00.0210.00423.318-0.011-0.0110.0000.0000.0000.000
19A70TYR00.0420.00514.972-0.012-0.0120.0000.0000.0000.000
20A71GLN00.0160.00420.179-0.029-0.0290.0000.0000.0000.000
21A72GLU-1-0.806-0.88221.941-0.030-0.0300.0000.0000.0000.000
22A73PHE00.0130.00020.3360.0000.0000.0000.0000.0000.000
23A74LEU00.0050.01116.020-0.015-0.0150.0000.0000.0000.000
24A75GLU-1-0.808-0.86819.912-0.150-0.1500.0000.0000.0000.000
25A76LYS10.8190.90723.0210.0370.0370.0000.0000.0000.000
26A77THR0-0.105-0.07717.436-0.008-0.0080.0000.0000.0000.000
27A78LYS10.7670.87820.1330.1500.1500.0000.0000.0000.000
28A79SER00.0180.01222.946-0.001-0.0010.0000.0000.0000.000
29A80SER0-0.061-0.03224.5110.0130.0130.0000.0000.0000.000
30A81GLY00.0180.01522.7690.0100.0100.0000.0000.0000.000
31A82TRP0-0.0070.00020.2530.0070.0070.0000.0000.0000.000
32A83ILE0-0.009-0.00614.966-0.025-0.0250.0000.0000.0000.000
33A84LYS10.7940.8799.8330.2750.2750.0000.0000.0000.000
34A85LEU00.0000.00011.918-0.068-0.0680.0000.0000.0000.000
35A86PRO0-0.0160.0066.333-0.006-0.0060.0000.0000.0000.000
36A87SER0-0.026-0.0107.6600.1740.1740.0000.0000.0000.000
37A88PHE00.0490.0162.573-2.105-0.6141.714-1.173-2.033-0.011
38A89LYS10.8830.9355.213-2.742-2.7420.0000.0000.0000.000
39A90SER00.0230.0086.880-0.631-0.6310.0000.0000.0000.000
40A91ASN00.1070.0487.5120.3190.3190.0000.0000.0000.000
41A92ARG10.8950.9558.759-0.992-0.9920.0000.0000.0000.000
42A93ASP-1-0.893-0.9557.1620.9850.9850.0000.0000.0000.000
43A94HIS10.7900.8884.171-2.037-1.928-0.001-0.009-0.0990.000
44A95ILE00.0400.0308.776-0.059-0.0590.0000.0000.0000.000
45A96ARG10.9460.96612.6130.1010.1010.0000.0000.0000.000
46A97GLY00.0570.02913.974-0.021-0.0210.0000.0000.0000.000
47A98LEU0-0.0210.00115.605-0.001-0.0010.0000.0000.0000.000
48A99LYS10.8300.90617.675-0.059-0.0590.0000.0000.0000.000
49A100LEU0-0.006-0.00517.6290.0110.0110.0000.0000.0000.000
50A101PRO0-0.041-0.01621.687-0.004-0.0040.0000.0000.0000.000
51A112ASP-1-0.796-0.88010.5831.1771.1770.0000.0000.0000.000
52A113CYS0-0.015-0.01611.340-0.135-0.1350.0000.0000.0000.000
53A114ARG10.8420.91110.383-0.564-0.5640.0000.0000.0000.000
54A115ILE00.0000.00410.632-0.134-0.1340.0000.0000.0000.000
55A116PHE00.0590.02712.7870.0070.0070.0000.0000.0000.000
56A117THR00.0550.02413.8440.0160.0160.0000.0000.0000.000
57A118ARG10.8550.91410.128-0.570-0.5700.0000.0000.0000.000
58A119CYS0-0.057-0.02712.4350.0930.0930.0000.0000.0000.000
59A120ILE00.0030.01214.9400.0070.0070.0000.0000.0000.000
60A121GLN00.001-0.0118.0680.0440.0440.0000.0000.0000.000
61A122VAL0-0.0090.00712.364-0.027-0.0270.0000.0000.0000.000
62A123GLU-1-0.817-0.92414.2430.1090.1090.0000.0000.0000.000
63A124GLY00.0380.00115.880-0.028-0.0280.0000.0000.0000.000
64A125GLN0-0.051-0.00618.368-0.023-0.0230.0000.0000.0000.000
65A126GLY00.0310.01117.0760.0020.0020.0000.0000.0000.000
66A127PHE0-0.023-0.02016.257-0.042-0.0420.0000.0000.0000.000
67A128GLU-1-0.760-0.83915.6720.3320.3320.0000.0000.0000.000
68A129TYR0-0.040-0.04912.4750.0160.0160.0000.0000.0000.000
69A130VAL00.0090.00413.8640.0250.0250.0000.0000.0000.000
70A131ILE00.0190.01414.1970.0010.0010.0000.0000.0000.000
71A132PHE00.0070.01415.051-0.038-0.0380.0000.0000.0000.000
72A133PHE00.0590.00917.2540.0250.0250.0000.0000.0000.000
73A134GLN00.0440.02519.037-0.020-0.0200.0000.0000.0000.000
74A135PRO00.0320.00219.4460.0130.0130.0000.0000.0000.000
75A136THR0-0.039-0.01722.1070.0060.0060.0000.0000.0000.000
76A137GLN0-0.021-0.02025.6990.0110.0110.0000.0000.0000.000
77A138LYS10.8500.93823.7300.0080.0080.0000.0000.0000.000
78A139LYS10.8770.92923.836-0.007-0.0070.0000.0000.0000.000
79A140SER0-0.041-0.05019.675-0.012-0.0120.0000.0000.0000.000
80A141VAL00.0060.01420.4920.0030.0030.0000.0000.0000.000
81A142CYS0-0.056-0.00718.614-0.002-0.0020.0000.0000.0000.000
82A143LEU0-0.0140.00118.673-0.011-0.0110.0000.0000.0000.000
83A144PHE00.048-0.01118.5280.0240.0240.0000.0000.0000.000
84A145GLN00.0570.03020.027-0.036-0.0360.0000.0000.0000.000
85A146PRO0-0.063-0.02320.6800.0290.0290.0000.0000.0000.000
86A147GLY00.1090.05421.233-0.021-0.0210.0000.0000.0000.000
87A148SER00.039-0.00122.2600.0090.0090.0000.0000.0000.000
88A149TYR0-0.068-0.03819.7160.0080.0080.0000.0000.0000.000
89A150LEU0-0.061-0.02220.0920.0150.0150.0000.0000.0000.000
90A151GLU-1-0.824-0.90224.1740.1130.1130.0000.0000.0000.000
91A152GLY0-0.033-0.02827.9380.0110.0110.0000.0000.0000.000
92A153PRO0-0.072-0.01330.909-0.004-0.0040.0000.0000.0000.000
93A154PRO00.027-0.00632.8220.0010.0010.0000.0000.0000.000
94A155GLY00.0110.01831.851-0.008-0.0080.0000.0000.0000.000
95A156PHE0-0.039-0.03230.621-0.004-0.0040.0000.0000.0000.000
96A157ALA00.0300.02326.1280.0070.0070.0000.0000.0000.000
97A158HIS00.0230.01227.003-0.011-0.0110.0000.0000.0000.000
98A159GLY00.0400.02527.1030.0080.0080.0000.0000.0000.000
99A160GLY00.002-0.01426.7530.0020.0020.0000.0000.0000.000
100A161SER0-0.032-0.02022.8230.0170.0170.0000.0000.0000.000
101A162LEU00.0580.01822.4520.0140.0140.0000.0000.0000.000
102A163ALA0-0.008-0.01323.7740.0010.0010.0000.0000.0000.000
103A164ALA00.0110.00620.2470.0030.0030.0000.0000.0000.000
104A165MET0-0.0060.01016.0590.0290.0290.0000.0000.0000.000
105A166MET0-0.0310.03119.805-0.009-0.0090.0000.0000.0000.000
106A167ASP-1-0.822-0.88521.0620.2230.2230.0000.0000.0000.000
107A168GLU-1-0.748-0.85213.2000.4830.4830.0000.0000.0000.000
108A169THR0-0.022-0.03517.130-0.011-0.0110.0000.0000.0000.000
109A170PHE0-0.0190.00118.762-0.023-0.0230.0000.0000.0000.000
110A171SER00.0000.00817.617-0.011-0.0110.0000.0000.0000.000
111A172LYS10.7840.87011.424-0.505-0.5050.0000.0000.0000.000
112A173THR0-0.001-0.00316.307-0.040-0.0400.0000.0000.0000.000
113A174ALA00.017-0.00319.354-0.023-0.0230.0000.0000.0000.000
114A175PHE0-0.0100.00914.259-0.013-0.0130.0000.0000.0000.000
115A176LEU0-0.003-0.00814.258-0.025-0.0250.0000.0000.0000.000
116A177ALA0-0.041-0.00918.290-0.021-0.0210.0000.0000.0000.000
117A178GLY00.007-0.00121.725-0.013-0.0130.0000.0000.0000.000
118A179GLU-1-0.884-0.93220.0820.0420.0420.0000.0000.0000.000
119A180GLY0-0.002-0.00521.1720.0090.0090.0000.0000.0000.000
120A181LEU0-0.046-0.02916.2130.0160.0160.0000.0000.0000.000
121A182PHE00.0150.00720.2600.0230.0230.0000.0000.0000.000
122A183THR00.003-0.02222.868-0.019-0.0190.0000.0000.0000.000
123A184LEU0-0.0190.00324.7030.0000.0000.0000.0000.0000.000
124A185SER0-0.045-0.02928.120-0.006-0.0060.0000.0000.0000.000
125A186LEU00.0380.01824.8610.0000.0000.0000.0000.0000.000
126A187ASN0-0.0330.00028.641-0.002-0.0020.0000.0000.0000.000
127A188ILE00.0470.00727.025-0.003-0.0030.0000.0000.0000.000
128A189ARG10.8530.92631.241-0.079-0.0790.0000.0000.0000.000
129A190PHE00.0430.00729.174-0.005-0.0050.0000.0000.0000.000
130A191LYS10.8070.90233.738-0.071-0.0710.0000.0000.0000.000
131A192ASN00.0110.00834.043-0.005-0.0050.0000.0000.0000.000
132A193LEU00.0200.01732.4660.0060.0060.0000.0000.0000.000
133A194ILE00.0210.00926.509-0.006-0.0060.0000.0000.0000.000
134A195PRO00.0110.01129.6640.0080.0080.0000.0000.0000.000
135A196VAL00.0190.02425.8160.0040.0040.0000.0000.0000.000
136A197ASP-1-0.868-0.93123.5870.1180.1180.0000.0000.0000.000
137A198SER0-0.096-0.05025.725-0.014-0.0140.0000.0000.0000.000
138A199LEU0-0.016-0.01923.2100.0120.0120.0000.0000.0000.000
139A200VAL0-0.045-0.02623.836-0.006-0.0060.0000.0000.0000.000
140A201VAL00.0180.01323.3710.0060.0060.0000.0000.0000.000
141A202MET0-0.039-0.02822.2930.0060.0060.0000.0000.0000.000
142A203ASP-1-0.766-0.85523.0380.0410.0410.0000.0000.0000.000
143A204VAL00.000-0.01122.7080.0090.0090.0000.0000.0000.000
144A205GLU-1-0.868-0.91724.6900.0190.0190.0000.0000.0000.000
145A206VAL00.004-0.00524.7050.0090.0090.0000.0000.0000.000
146A207ASP-1-0.867-0.90527.4000.0430.0430.0000.0000.0000.000
147A208LYS10.7890.88130.370-0.051-0.0510.0000.0000.0000.000
148A209ILE00.002-0.01026.7300.0070.0070.0000.0000.0000.000
149A210GLU-1-0.766-0.83930.4100.0390.0390.0000.0000.0000.000
150A211ASP-1-0.907-0.95232.3010.0480.0480.0000.0000.0000.000
151A212GLN00.0150.00929.4820.0060.0060.0000.0000.0000.000
152A213LYS10.8720.94528.024-0.053-0.0530.0000.0000.0000.000
153A214LEU00.0030.02223.658-0.009-0.0090.0000.0000.0000.000
154A215TYR0-0.081-0.07427.4290.0120.0120.0000.0000.0000.000
155A216MET0-0.0260.00323.136-0.006-0.0060.0000.0000.0000.000
156A217SER0-0.042-0.03327.9760.0060.0060.0000.0000.0000.000
157A218CYS0-0.014-0.01425.6400.0040.0040.0000.0000.0000.000
158A219ILE0-0.062-0.03327.831-0.002-0.0020.0000.0000.0000.000
159A220ALA00.0350.02626.8690.0000.0000.0000.0000.0000.000
160A221HIS10.7730.84927.885-0.045-0.0450.0000.0000.0000.000
161A222SER00.0710.02228.1880.0050.0050.0000.0000.0000.000
162A223ARG10.8510.88827.4750.0020.0020.0000.0000.0000.000
163A224ASP-1-0.811-0.88129.6790.0270.0270.0000.0000.0000.000
164A225GLN0-0.063-0.03532.0060.0000.0000.0000.0000.0000.000
165A226GLN0-0.041-0.01233.8460.0010.0010.0000.0000.0000.000
166A227THR0-0.015-0.00333.2400.0030.0030.0000.0000.0000.000
167A228VAL0-0.0060.00432.5090.0030.0030.0000.0000.0000.000
168A229TYR00.0240.01728.4820.0000.0000.0000.0000.0000.000
169A230ALA0-0.007-0.01329.5890.0030.0030.0000.0000.0000.000
170A231LYS10.9640.99430.756-0.055-0.0550.0000.0000.0000.000
171A232SER0-0.029-0.05427.0910.0020.0020.0000.0000.0000.000
172A233SER00.0320.00729.150-0.009-0.0090.0000.0000.0000.000
173A234GLY00.0090.01427.2860.0080.0080.0000.0000.0000.000
174A235VAL0-0.040-0.00528.145-0.009-0.0090.0000.0000.0000.000
175A236PHE00.007-0.00421.3760.0060.0060.0000.0000.0000.000
176A237LEU00.0150.00925.502-0.014-0.0140.0000.0000.0000.000
177A238GLN0-0.027-0.03024.0310.0110.0110.0000.0000.0000.000
178A239LEU0-0.028-0.01518.7870.0070.0070.0000.0000.0000.000
179A240GLN00.0060.00423.473-0.015-0.0150.0000.0000.0000.000
180A241LEU0-0.0100.00822.7920.0050.0050.0000.0000.0000.000
181A242GLU-1-0.883-0.94125.2150.0800.0800.0000.0000.0000.000
182A243GLU-1-0.960-0.97326.0510.0070.0070.0000.0000.0000.000
183A244GLU-1-0.889-0.93024.7470.0740.0740.0000.0000.0000.000
184A245SER0-0.022-0.01527.847-0.008-0.0080.0000.0000.0000.000
185A246PRO0-0.037-0.01126.9370.0050.0050.0000.0000.0000.000
186A247GLN00.0040.00222.2250.0040.0040.0000.0000.0000.000