FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: P26RP

Calculation Name: 1WBT-A-Xray12

Preferred Name: MAP kinase p38 alpha

Target Type: SINGLE PROTEIN

Ligand Name: 3-fluoro-5-morpholin-4-yl-n-[1-(2-pyridin-4-ylethyl)-1h-indol-6-yl]benzamide

ligand 3-letter code: WBT

PDB ID: 1WBT

Chain ID: A

ChEMBL ID: CHEMBL260

UniProt ID: Q16539

Base Structure: X-ray

Registration Date: 2017-08-22

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 347
LigandResidueName WBT
LigandFragmentNumber 347
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5759437.263982
FMO2-HF: Nuclear repulsion 5619015.742708
FMO2-HF: Total energy -140421.521274
FMO2-MP2: Total energy -140831.478461


3D Structure
Snapshot
 
Ligand structure

WBT

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-118.195-76.04297.394-38.029-101.519-0.033


Interactive mode: IFIE and PIEDA for fragment #347(A:1355:WBT)


Summations of interaction energy for fragment #347(A:1355:WBT)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-118.195-76.04297.394-38.029-101.5190.033
Interaction energy analysis for fragmet #347(A:1355:WBT)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.032 / q_NPA : 0.029
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A6PRO10.8510.90215.531-0.129-0.1290.0000.0000.0000.000
2A7THR00.0970.06818.741-0.032-0.0320.0000.0000.0000.000
3A8PHE00.0080.02014.0490.0340.0340.0000.0000.0000.000
4A9TYR0-0.039-0.04914.233-0.033-0.0330.0000.0000.0000.000
5A10ARG10.9360.96616.150-0.149-0.1490.0000.0000.0000.000
6A11GLN00.0270.00714.8050.0100.0100.0000.0000.0000.000
7A12GLU-1-0.948-0.95816.1630.1890.1890.0000.0000.0000.000
8A13LEU00.011-0.00712.1310.0110.0110.0000.0000.0000.000
9A14ASN00.008-0.00112.8810.0000.0000.0000.0000.0000.000
10A15LYS10.9120.94815.720-0.154-0.1540.0000.0000.0000.000
11A16THR00.0090.03612.151-0.043-0.0430.0000.0000.0000.000
12A17ILE0-0.006-0.01215.4140.0340.0340.0000.0000.0000.000
13A18TRP00.0370.0056.945-0.011-0.0110.0000.0000.0000.000
14A19GLU-1-0.894-0.96213.4260.1620.1620.0000.0000.0000.000
15A20VAL0-0.0070.0049.8700.0040.0040.0000.0000.0000.000
16A21PRO0-0.008-0.00811.579-0.029-0.0290.0000.0000.0000.000
17A22GLU-1-0.886-0.96013.9170.3400.3400.0000.0000.0000.000
18A23ARG10.7860.89412.286-0.372-0.3720.0000.0000.0000.000
19A24TYR0-0.038-0.0579.1470.0970.0970.0000.0000.0000.000
20A25GLN00.0130.03412.094-0.077-0.0770.0000.0000.0000.000
21A26ASN0-0.003-0.01912.5920.0830.0830.0000.0000.0000.000
22A27LEU0-0.0160.0039.9430.1410.1410.0000.0000.0000.000
23A28SER00.0200.00110.146-0.218-0.2180.0000.0000.0000.000
24A29PRO0-0.022-0.0088.8390.2430.2430.0000.0000.0000.000
25A30VAL00.0030.0223.715-0.2540.0670.002-0.035-0.2890.000
26A31GLY00.019-0.0036.816-0.215-0.2150.0000.0000.0000.000
27A32SER0-0.073-0.0366.8900.1920.1920.0000.0000.0000.000
28A33GLY00.0470.0278.411-0.151-0.1510.0000.0000.0000.000
29A34ALA0-0.027-0.01510.0920.1260.1260.0000.0000.0000.000
30A35TYR0-0.035-0.0558.1470.0940.0940.0000.0000.0000.000
31A36GLY00.0440.0207.2030.1050.1050.0000.0000.0000.000
32A37SER0-0.0120.0007.876-0.388-0.3880.0000.0000.0000.000
33A38VAL00.0140.0012.475-1.1040.5611.369-0.638-2.3970.002
34A39CYS0-0.052-0.0055.091-0.604-0.475-0.001-0.010-0.1190.000
35A40ALA00.0290.0145.2950.5850.5850.0000.0000.0000.000
36A41ALA00.017-0.0017.058-0.662-0.6620.0000.0000.0000.000
37A42PHE0-0.030-0.0089.3940.3900.3900.0000.0000.0000.000
38A43ASP-1-0.704-0.80510.1170.4580.4580.0000.0000.0000.000
39A44THR0-0.031-0.02311.991-0.052-0.0520.0000.0000.0000.000
40A45LYS10.8610.93214.649-0.368-0.3680.0000.0000.0000.000
41A46THR00.033-0.01812.1030.0100.0100.0000.0000.0000.000
42A47GLY0-0.0040.00614.413-0.010-0.0100.0000.0000.0000.000
43A48LEU0-0.0030.0158.9910.1140.1140.0000.0000.0000.000
44A49ARG10.9560.9748.235-2.532-2.5320.0000.0000.0000.000
45A50VAL00.004-0.0045.5490.3850.3850.0000.0000.0000.000
46A51ALA00.001-0.0012.079-1.359-0.9046.135-2.162-4.4280.014
47A52VAL00.0180.0102.665-4.699-2.9550.855-0.931-1.668-0.015
48A53LYS10.8660.9242.432-8.553-2.2995.448-3.037-8.6650.039
49A54LYS10.8690.9524.368-1.618-1.3270.008-0.096-0.2020.001
50A55LEU00.0190.0035.992-0.006-0.0060.0000.0000.0000.000
51A56SER0-0.015-0.0039.695-0.001-0.0010.0000.0000.0000.000
52A57ARG10.9010.95612.5640.0080.0080.0000.0000.0000.000
53A58PRO00.0640.04511.336-0.043-0.0430.0000.0000.0000.000
54A59PHE00.0560.01012.818-0.052-0.0520.0000.0000.0000.000
55A60GLN0-0.040-0.01715.6210.0150.0150.0000.0000.0000.000
56A61SER0-0.021-0.04615.728-0.001-0.0010.0000.0000.0000.000
57A62ILE00.1140.05215.807-0.009-0.0090.0000.0000.0000.000
58A63ILE0-0.011-0.00312.226-0.028-0.0280.0000.0000.0000.000
59A64HIS0-0.0110.01911.445-0.034-0.0340.0000.0000.0000.000
60A65ALA00.0690.04910.806-0.023-0.0230.0000.0000.0000.000
61A66LYS10.8500.94610.7430.4880.4880.0000.0000.0000.000
62A67ARG10.8990.9506.2060.3600.3600.0000.0000.0000.000
63A68THR0-0.012-0.0156.3200.0880.0880.0000.0000.0000.000
64A69TYR00.0420.0267.709-0.192-0.1920.0000.0000.0000.000
65A70ARG10.8210.9025.0060.3930.513-0.001-0.004-0.1150.000
66A71GLU-1-0.825-0.9012.332-18.729-12.6483.658-3.838-5.901-0.032
67A72LEU0-0.0080.0024.067-1.445-1.1360.000-0.028-0.2820.000
68A73ARG10.8820.9407.3970.8120.8120.0000.0000.0000.000
69A74LEU0-0.001-0.0132.597-2.873-0.2400.600-0.875-2.3570.006
70A75LEU0-0.025-0.0172.032-2.753-1.5846.520-1.510-6.1790.010
71A76LYS10.7720.8855.8710.9810.9810.0000.0000.0000.000
72A77HIS0-0.032-0.0047.4750.1840.1840.0000.0000.0000.000
73A78MET0-0.069-0.0193.163-2.052-0.4741.039-0.628-1.989-0.002
74A79LYS10.9450.9686.1330.6580.6580.0000.0000.0000.000
75A80HIS00.0920.0336.7910.0530.0530.0000.0000.0000.000
76A81GLU-1-0.831-0.9187.954-0.073-0.0730.0000.0000.0000.000
77A82ASN0-0.031-0.0127.6050.1380.1380.0000.0000.0000.000
78A83VAL0-0.023-0.0112.132-1.296-1.0001.509-0.370-1.436-0.002
79A84ILE0-0.052-0.0182.386-2.7600.0045.383-1.562-6.5850.014
80A85GLY00.0630.0375.081-0.801-0.668-0.001-0.007-0.1260.000
81A86LEU0-0.0470.0083.528-0.0370.3970.005-0.051-0.3870.000
82A87LEU0-0.005-0.0075.5110.1640.1640.0000.0000.0000.000
83A88ASP-1-0.831-0.8966.1500.2000.2000.0000.0000.0000.000
84A89VAL0-0.0090.0105.848-0.296-0.2960.0000.0000.0000.000
85A90PHE0-0.029-0.0107.8080.0990.0990.0000.0000.0000.000
86A91THR00.003-0.02810.3700.0470.0470.0000.0000.0000.000
87A92PRO0-0.002-0.01113.251-0.005-0.0050.0000.0000.0000.000
88A93ALA0-0.0560.00516.289-0.005-0.0050.0000.0000.0000.000
89A94ARG10.9210.93618.500-0.072-0.0720.0000.0000.0000.000
90A95SER0-0.023-0.01021.070-0.008-0.0080.0000.0000.0000.000
91A96LEU00.0670.02819.4540.0010.0010.0000.0000.0000.000
92A97GLU-1-0.913-0.95321.457-0.077-0.0770.0000.0000.0000.000
93A98GLU-1-0.900-0.93521.2260.0170.0170.0000.0000.0000.000
94A99PHE0-0.047-0.01413.3010.0170.0170.0000.0000.0000.000
95A100ASN0-0.039-0.04117.253-0.047-0.0470.0000.0000.0000.000
96A101ASP-1-0.935-0.95813.2490.1390.1390.0000.0000.0000.000
97A102VAL00.019-0.0028.094-0.052-0.0520.0000.0000.0000.000
98A103TYR00.0190.0097.3470.2350.2350.0000.0000.0000.000
99A104LEU00.0030.0032.715-2.286-0.4720.898-0.701-2.0100.005
100A105VAL00.0080.0073.367-0.9300.6240.093-0.518-1.129-0.004
101A106THR0-0.001-0.0352.507-3.045-1.5434.854-1.249-5.1070.000
102A107HIS00.1040.0434.2920.2790.8890.001-0.142-0.4690.000
103A108LEU0-0.094-0.0462.118-8.728-6.5136.019-3.208-5.026-0.015
104A109MET00.0250.0131.876-10.372-17.39819.867-4.845-7.9950.035
105A110GLY0-0.059-0.0283.179-3.182-2.9300.0640.306-0.6220.004
106A111ALA0-0.0010.0055.232-0.796-0.764-0.001-0.001-0.0290.000
107A112ASP-1-0.793-0.9047.3140.5650.5650.0000.0000.0000.000
108A113LEU00.0480.0078.904-0.095-0.0950.0000.0000.0000.000
109A114ASN0-0.014-0.00211.445-0.083-0.0830.0000.0000.0000.000
110A115ASN0-0.003-0.0239.9740.0200.0200.0000.0000.0000.000
111A116ILE0-0.0330.01212.699-0.026-0.0260.0000.0000.0000.000
112A117VAL0-0.017-0.00714.992-0.041-0.0410.0000.0000.0000.000
113A118LYS10.8890.94316.591-0.114-0.1140.0000.0000.0000.000
114A119CYS0-0.092-0.04516.129-0.044-0.0440.0000.0000.0000.000
115A120GLN00.0450.01716.2370.1030.1030.0000.0000.0000.000
116A121LYS10.9050.96120.240-0.229-0.2290.0000.0000.0000.000
117A122LEU00.0450.03518.8030.0250.0250.0000.0000.0000.000
118A123THR0-0.020-0.01022.911-0.034-0.0340.0000.0000.0000.000
119A124ASP-1-0.733-0.86623.0070.0430.0430.0000.0000.0000.000
120A125ASP-1-0.822-0.88822.3730.1330.1330.0000.0000.0000.000
121A126HIS00.0620.03220.217-0.006-0.0060.0000.0000.0000.000
122A127VAL0-0.016-0.00718.4410.0070.0070.0000.0000.0000.000
123A128GLN0-0.046-0.02617.635-0.017-0.0170.0000.0000.0000.000
124A129PHE00.0710.03916.426-0.035-0.0350.0000.0000.0000.000
125A130LEU00.000-0.00214.080-0.011-0.0110.0000.0000.0000.000
126A131ILE0-0.016-0.02712.685-0.046-0.0460.0000.0000.0000.000
127A132TYR0-0.047-0.03112.923-0.038-0.0380.0000.0000.0000.000
128A133GLN00.0280.01010.736-0.008-0.0080.0000.0000.0000.000
129A134ILE0-0.045-0.0117.866-0.082-0.0820.0000.0000.0000.000
130A135LEU0-0.008-0.0128.330-0.018-0.0180.0000.0000.0000.000
131A136ARG10.8270.92310.4670.0340.0340.0000.0000.0000.000
132A137GLY00.0200.0076.236-0.045-0.0450.0000.0000.0000.000
133A138LEU0-0.045-0.0435.4520.2530.2530.0000.0000.0000.000
134A139LYS10.8930.9467.2510.1420.1420.0000.0000.0000.000
135A140TYR00.0530.0556.099-0.164-0.1640.0000.0000.0000.000
136A141ILE0-0.0140.0252.591-3.547-1.5931.946-1.028-2.8730.011
137A142HIS0-0.075-0.0615.742-0.522-0.433-0.001-0.001-0.0870.000
138A143SER0-0.081-0.0507.796-0.085-0.0850.0000.0000.0000.000
139A144ALA00.0050.0097.2090.0020.0020.0000.0000.0000.000
140A145ASP-1-0.933-0.9728.584-0.905-0.9050.0000.0000.0000.000
141A146ILE0-0.052-0.0162.330-1.334-0.9331.189-0.307-1.283-0.003
142A147ILE0-0.020-0.0234.7790.4170.547-0.001-0.017-0.1120.000
143A148HIS0-0.026-0.0321.942-3.715-3.9126.346-1.880-4.269-0.011
144A149ARG10.8400.9153.2153.1532.7960.0230.633-0.2990.000
145A150ASP-1-0.908-0.9665.698-0.553-0.5530.0000.0000.0000.000
146A151LEU00.0230.0264.9720.1360.1360.0000.0000.0000.000
147A152LYS10.9370.9647.4710.7790.7790.0000.0000.0000.000
148A153PRO00.0600.0239.3320.0220.0220.0000.0000.0000.000
149A154SER0-0.004-0.0067.6740.2070.2070.0000.0000.0000.000
150A155ASN0-0.084-0.0315.725-0.370-0.3700.0000.0000.0000.000
151A156LEU00.0070.0026.1160.0440.0440.0000.0000.0000.000
152A157ALA00.0170.0065.8020.1540.1540.0000.0000.0000.000
153A158VAL0-0.034-0.0217.897-0.395-0.3950.0000.0000.0000.000
154A159ASN0-0.043-0.01410.0500.1410.1410.0000.0000.0000.000
155A160GLU-1-0.934-0.99111.3141.0741.0740.0000.0000.0000.000
156A161ASP-1-0.906-0.93214.6070.5950.5950.0000.0000.0000.000
157A162CYS0-0.117-0.07114.935-0.117-0.1170.0000.0000.0000.000
158A163GLU-1-0.842-0.89112.5170.5020.5020.0000.0000.0000.000
159A164LEU0-0.036-0.0238.1370.1970.1970.0000.0000.0000.000
160A165LYS10.8600.9376.759-0.334-0.3340.0000.0000.0000.000
161A166ILE00.0090.0142.1010.186-0.3052.714-0.457-1.766-0.003
162A167LEU0-0.045-0.0322.383-7.760-2.8142.542-2.174-5.3140.002
163A168ASP-1-0.864-0.9411.996-10.821-9.5979.650-3.478-7.3960.026
164A169PHE0-0.030-0.0132.568-13.773-6.9478.629-3.643-11.813-0.049
165A170GLY00.0550.0363.2830.4960.3170.0280.505-0.3530.000
166A171LEU0-0.031-0.0093.638-0.2820.1960.006-0.042-0.4420.000
167A172ALA0-0.025-0.0136.7130.3230.3230.0000.0000.0000.000
168A173ARG10.9260.96310.2660.3920.3920.0000.0000.0000.000
169A174HIS00.0840.03710.7860.0260.0260.0000.0000.0000.000
170A175THR0-0.072-0.03712.7400.0170.0170.0000.0000.0000.000
171A176ASP-1-0.843-0.92816.407-0.348-0.3480.0000.0000.0000.000
172A177ASP-1-0.963-0.97019.723-0.263-0.2630.0000.0000.0000.000
173A178GLU-1-0.895-0.94113.316-0.660-0.6600.0000.0000.0000.000
174A179MET0-0.039-0.00815.246-0.028-0.0280.0000.0000.0000.000
175A180THR0-0.043-0.03518.5370.0290.0290.0000.0000.0000.000
176A181GLY00.0250.01621.4850.0030.0030.0000.0000.0000.000
177A182TYR0-0.026-0.01522.324-0.014-0.0140.0000.0000.0000.000
178A183VAL00.0080.01417.1700.0080.0080.0000.0000.0000.000
179A184ALA00.0580.01014.350-0.016-0.0160.0000.0000.0000.000
180A185THR0-0.059-0.02213.976-0.030-0.0300.0000.0000.0000.000
181A186ARG10.8440.90114.1330.2410.2410.0000.0000.0000.000
182A187TRP0-0.059-0.01016.324-0.002-0.0020.0000.0000.0000.000
183A188TYR0-0.038-0.05012.4530.0120.0120.0000.0000.0000.000
184A189ARG10.9080.98410.1090.7360.7360.0000.0000.0000.000
185A190ALA00.0440.02812.9920.0580.0580.0000.0000.0000.000
186A191PRO00.0250.00314.905-0.025-0.0250.0000.0000.0000.000
187A192GLU-1-0.763-0.87015.371-0.440-0.4400.0000.0000.0000.000
188A193ILE00.0060.00811.310-0.002-0.0020.0000.0000.0000.000
189A194MET0-0.065-0.01515.4640.0100.0100.0000.0000.0000.000
190A195LEU0-0.050-0.03217.3320.0240.0240.0000.0000.0000.000
191A196ASN0-0.055-0.02118.3020.0340.0340.0000.0000.0000.000
192A197TRP00.021-0.00619.5630.0300.0300.0000.0000.0000.000
193A198MET0-0.010-0.01718.4560.0310.0310.0000.0000.0000.000
194A199HIS00.0150.01517.279-0.028-0.0280.0000.0000.0000.000
195A200TYR00.0140.01310.157-0.032-0.0320.0000.0000.0000.000
196A201ASN00.0950.07712.659-0.072-0.0720.0000.0000.0000.000
197A202GLN00.1030.0318.639-0.105-0.1050.0000.0000.0000.000
198A203THR0-0.028-0.0429.7390.0210.0210.0000.0000.0000.000
199A204VAL0-0.047-0.0268.7390.0680.0680.0000.0000.0000.000
200A205ASP-1-0.701-0.8435.901-1.269-1.2690.0000.0000.0000.000
201A206ILE0-0.024-0.0048.9090.0840.0840.0000.0000.0000.000
202A207TRP0-0.0060.00812.1440.0630.0630.0000.0000.0000.000
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