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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: P28RP

Calculation Name: 3OMO-B-Xray11

Preferred Name: Estrogen receptor beta

Target Type: SINGLE PROTEIN

Ligand Name: 2-(trifluoroacetyl)-1,2,3,4-tetrahydroisoquinolin-6-ol

ligand 3-letter code: WV7

PDB ID: 3OMO

Chain ID: B

ChEMBL ID: CHEMBL242

UniProt ID: Q92731

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.2017021
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 233
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3022555.624103
FMO2-HF: Nuclear repulsion 2926739.647208
FMO2-HF: Total energy -95815.976895
FMO2-MP2: Total energy -96084.243994


3D Structure
Snapshot
 
Ligand structure

WV7

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-65.232-37.14843.706-21.634-50.158-0.006


Interactive mode: IFIE and PIEDA for fragment #233(D:1:WV7)


Summations of interaction energy for fragment #233(D:1:WV7)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-65.232-37.14843.706-21.634-50.1580.006
Interaction energy analysis for fragmet #233(D:1:WV7)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.007 / q_NPA : -0.024
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1D264SER10.7270.83826.8870.2230.2230.0000.0000.0000.000
2D265PRO00.1090.03625.461-0.016-0.0160.0000.0000.0000.000
3D266GLU-1-0.762-0.87423.958-0.340-0.3400.0000.0000.0000.000
4D267GLN00.0450.04124.202-0.014-0.0140.0000.0000.0000.000
5D268LEU00.0290.03720.805-0.022-0.0220.0000.0000.0000.000
6D269VAL00.006-0.00319.683-0.036-0.0360.0000.0000.0000.000
7D270LEU00.0010.00119.287-0.043-0.0430.0000.0000.0000.000
8D271THR0-0.002-0.01419.775-0.035-0.0350.0000.0000.0000.000
9D272LEU0-0.007-0.01415.645-0.042-0.0420.0000.0000.0000.000
10D273LEU0-0.048-0.02115.107-0.082-0.0820.0000.0000.0000.000
11D274GLU-1-0.910-0.96415.591-0.559-0.5590.0000.0000.0000.000
12D275ALA00.0050.00514.906-0.045-0.0450.0000.0000.0000.000
13D276GLU-1-0.761-0.83010.305-1.381-1.3810.0000.0000.0000.000
14D277PRO0-0.0020.0137.3510.1140.1140.0000.0000.0000.000
15D278PRO0-0.022-0.01410.0870.0790.0790.0000.0000.0000.000
16D279HIS0-0.027-0.0176.323-0.772-0.7720.0000.0000.0000.000
17D280VAL0-0.027-0.0075.4830.7790.7790.0000.0000.0000.000
18D281LEU0-0.012-0.0066.865-0.086-0.0860.0000.0000.0000.000
19D282ILE0-0.022-0.0176.1820.0540.0540.0000.0000.0000.000
20D283SER00.0190.0049.1310.0140.0140.0000.0000.0000.000
21D284ARG10.7920.85410.5280.0090.0090.0000.0000.0000.000
22D285PRO0-0.007-0.00111.347-0.021-0.0210.0000.0000.0000.000
23D286SER0-0.016-0.00514.3080.0130.0130.0000.0000.0000.000
24D287ALA0-0.029-0.01717.0500.0140.0140.0000.0000.0000.000
25D288PRO0-0.004-0.00616.4780.0030.0030.0000.0000.0000.000
26D289PHE00.0170.0169.9770.0380.0380.0000.0000.0000.000
27D290THR00.0230.01013.1400.0070.0070.0000.0000.0000.000
28D291GLU-1-0.724-0.8479.4791.9561.9560.0000.0000.0000.000
29D292ALA00.0600.0289.3790.3490.3490.0000.0000.0000.000
30D293SER0-0.023-0.02210.6350.0200.0200.0000.0000.0000.000
31D294MET00.0290.0216.739-0.127-0.1270.0000.0000.0000.000
32D295MET00.0550.0402.784-2.547-1.2770.317-0.498-1.0890.007
33D296MET00.0050.0486.624-0.321-0.3210.0000.0000.0000.000
34D297SER0-0.019-0.0247.368-0.553-0.5530.0000.0000.0000.000
35D298LEU00.002-0.0092.312-3.210-1.1891.324-0.737-2.6090.002
36D299THR0-0.003-0.0292.554-7.046-4.6100.884-1.293-2.027-0.020
37D300LYS10.8370.9095.142-0.397-0.331-0.001-0.006-0.0600.000
38D301LEU0-0.0120.0012.150-1.273-0.2312.502-0.721-2.8230.003
39D302ALA00.0240.0092.523-3.291-1.0171.329-1.062-2.5400.002
40D303ASP-1-0.742-0.8723.732-0.645-0.6220.0700.150-0.2430.001
41D304LYS10.7830.9006.5581.2931.2930.0000.0000.0000.000
42D305GLU-1-0.753-0.8471.686-30.592-34.86012.825-5.006-3.552-0.056
43D306LEU00.0170.0175.5000.7720.7720.0000.0000.0000.000
44D307VAL00.0100.0038.0680.3210.3210.0000.0000.0000.000
45D308HIS0-0.014-0.0248.0100.4570.4570.0000.0000.0000.000
46D309MET00.0030.0198.1340.1770.1770.0000.0000.0000.000
47D310ILE0-0.015-0.0109.9050.2450.2450.0000.0000.0000.000
48D311SER0-0.052-0.03212.5570.1720.1720.0000.0000.0000.000
49D312TRP0-0.0360.00110.7870.0570.0570.0000.0000.0000.000
50D313ALA00.0530.01012.9280.1040.1040.0000.0000.0000.000
51D314LYS10.8720.93015.4230.4750.4750.0000.0000.0000.000
52D315LYS10.8220.92914.1570.9670.9670.0000.0000.0000.000
53D316ILE0-0.040-0.00715.9080.0390.0390.0000.0000.0000.000
54D317PRO00.0290.00620.1110.0270.0270.0000.0000.0000.000
55D318GLY00.004-0.00923.149-0.006-0.0060.0000.0000.0000.000
56D319PHE00.015-0.00817.3960.0170.0170.0000.0000.0000.000
57D320VAL0-0.011-0.01021.1010.0200.0200.0000.0000.0000.000
58D321GLU-1-0.882-0.91323.025-0.205-0.2050.0000.0000.0000.000
59D322LEU0-0.0080.00923.2430.0260.0260.0000.0000.0000.000
60D323SER0-0.009-0.02725.607-0.007-0.0070.0000.0000.0000.000
61D324LEU00.013-0.00522.714-0.021-0.0210.0000.0000.0000.000
62D325PHE00.0550.01122.535-0.010-0.0100.0000.0000.0000.000
63D326ASP-1-0.791-0.87521.665-0.127-0.1270.0000.0000.0000.000
64D327GLN0-0.079-0.05119.642-0.060-0.0600.0000.0000.0000.000
65D328VAL0-0.0020.01517.778-0.062-0.0620.0000.0000.0000.000
66D329ARG10.8920.95816.964-0.038-0.0380.0000.0000.0000.000
67D330LEU0-0.013-0.01817.1150.0320.0320.0000.0000.0000.000
68D331LEU0-0.0050.00213.367-0.019-0.0190.0000.0000.0000.000
69D332GLU-1-0.868-0.95312.3900.0070.0070.0000.0000.0000.000
70D333SER0-0.060-0.02612.7550.0990.0990.0000.0000.0000.000
71D334CYS0-0.0210.01410.926-0.007-0.0070.0000.0000.0000.000
72D335TRP00.0690.0165.977-0.230-0.2300.0000.0000.0000.000
73D336MET00.0260.0322.985-3.104-1.5881.486-0.736-2.266-0.006
74D337GLU-1-0.794-0.8834.509-0.879-0.739-0.001-0.012-0.1270.000
75D338VAL0-0.030-0.0196.483-0.124-0.1240.0000.0000.0000.000
76D339LEU0-0.0120.0052.689-3.491-0.7641.852-1.123-3.4560.009
77D340MET0-0.034-0.0042.215-2.308-0.0405.541-1.832-5.978-0.005
78D341MET0-0.004-0.0053.4110.6050.6110.0080.182-0.1950.000
79D342GLY0-0.0060.0044.976-0.111-0.051-0.001-0.006-0.0530.000
80D343LEU00.0160.0152.401-4.323-2.0274.199-1.445-5.0510.008
81D344MET0-0.0300.0004.375-0.562-0.3530.002-0.052-0.1590.000
82D345TRP0-0.034-0.0157.2360.1120.1120.0000.0000.0000.000
83D346ARG10.7250.8142.3847.1578.3310.268-0.574-0.8670.001
84D347SER00.006-0.0077.5350.0340.0340.0000.0000.0000.000
85D348ILE00.0030.01410.1740.0820.0820.0000.0000.0000.000
86D349ASP-1-0.854-0.93512.949-0.379-0.3790.0000.0000.0000.000
87D350HIS0-0.043-0.01212.7610.0990.0990.0000.0000.0000.000
88D351PRO0-0.014-0.01014.3060.0220.0220.0000.0000.0000.000
89D352GLY0-0.0070.00212.5860.0410.0410.0000.0000.0000.000
90D353LYS10.8300.89510.8150.0670.0670.0000.0000.0000.000
91D354LEU0-0.0010.0074.372-0.225-0.084-0.001-0.006-0.1340.000
92D355ILE00.0110.0057.9940.0490.0490.0000.0000.0000.000
93D356PHE00.0310.0002.040-4.319-1.8705.134-1.552-6.0320.009
94D357ALA00.0210.0105.064-1.876-1.753-0.001-0.008-0.1130.000
95D358PRO0-0.031-0.0277.7640.3590.3590.0000.0000.0000.000
96D359ASP-1-0.867-0.89910.905-0.430-0.4300.0000.0000.0000.000
97D360LEU0-0.005-0.0085.9500.1910.1910.0000.0000.0000.000
98D361VAL00.0060.0108.486-0.094-0.0940.0000.0000.0000.000
99D362LEU0-0.028-0.0086.0210.1290.1290.0000.0000.0000.000
100D363ASP-1-0.841-0.9299.7200.0170.0170.0000.0000.0000.000
101D364ARG10.8050.8539.907-0.326-0.3260.0000.0000.0000.000
102D365ASP-1-0.797-0.89210.2160.6230.6230.0000.0000.0000.000
103D366GLU-1-0.747-0.83410.5060.3210.3210.0000.0000.0000.000
104D367GLY00.0280.0117.6520.1930.1930.0000.0000.0000.000
105D368LYS10.8150.8818.425-0.355-0.3550.0000.0000.0000.000
106D369CYS0-0.103-0.03710.792-0.092-0.0920.0000.0000.0000.000
107D370VAL00.000-0.0066.2460.0740.0740.0000.0000.0000.000
108D371GLU-1-0.794-0.8838.3521.8821.8820.0000.0000.0000.000
109D372GLY00.0390.0087.4200.5510.5510.0000.0000.0000.000
110D373ILE0-0.015-0.0032.533-2.348-0.4851.712-1.302-2.2720.014
111D374LEU0-0.012-0.0024.994-0.329-0.274-0.0010.000-0.0530.000
112D375GLU-1-0.824-0.9047.7920.8420.8420.0000.0000.0000.000
113D376ILE0-0.002-0.0012.691-3.400-0.6591.121-1.503-2.3590.014
114D377PHE00.007-0.0083.553-1.503-0.8890.005-0.123-0.4970.001
115D378ASP-1-0.755-0.8356.5490.1640.1640.0000.0000.0000.000
116D379MET0-0.0260.0108.057-0.202-0.2020.0000.0000.0000.000
117D380LEU00.0380.0252.955-1.049-0.2120.122-0.178-0.781-0.001
118D381LEU00.0320.0317.3170.0200.0200.0000.0000.0000.000
119D382ALA0-0.0070.01210.298-0.004-0.0040.0000.0000.0000.000
120D383THR0-0.023-0.0359.5280.0200.0200.0000.0000.0000.000
121D384THR0-0.017-0.0248.907-0.019-0.0190.0000.0000.0000.000
122D385SER0-0.037-0.02611.3760.0160.0160.0000.0000.0000.000
123D386ARG10.8030.90114.4850.1010.1010.0000.0000.0000.000
124D387PHE00.0450.00210.0860.0160.0160.0000.0000.0000.000
125D388ARG10.8430.91714.1810.2300.2300.0000.0000.0000.000
126D389GLU-1-0.872-0.92317.074-0.079-0.0790.0000.0000.0000.000
127D390LEU0-0.016-0.01917.5640.0110.0110.0000.0000.0000.000
128D391LYS10.8530.93419.3660.1810.1810.0000.0000.0000.000
129D392LEU0-0.0350.00813.532-0.001-0.0010.0000.0000.0000.000
130D393GLN0-0.013-0.02017.292-0.036-0.0360.0000.0000.0000.000
131D394HIS00.0840.03912.8070.0220.0220.0000.0000.0000.000
132D395LYS10.8460.90015.9590.3290.3290.0000.0000.0000.000
133D396GLU-1-0.767-0.86517.382-0.271-0.2710.0000.0000.0000.000
134D397TYR0-0.008-0.0288.871-0.011-0.0110.0000.0000.0000.000
135D398LEU0-0.0050.01213.121-0.017-0.0170.0000.0000.0000.000
136D399CYS0-0.048-0.02114.7520.0070.0070.0000.0000.0000.000
137D400VAL00.0300.00512.7950.0250.0250.0000.0000.0000.000
138D401LYS10.8460.9158.2671.2591.2590.0000.0000.0000.000
139D402ALA0-0.0030.00712.2190.0000.0000.0000.0000.0000.000
140D403MET0-0.039-0.03515.4910.0400.0400.0000.0000.0000.000
141D404ILE0-0.017-0.0069.6930.0400.0400.0000.0000.0000.000
142D405LEU0-0.0020.00213.4900.0470.0470.0000.0000.0000.000
143D406LEU0-0.023-0.00314.5730.0490.0490.0000.0000.0000.000
144D407ASN0-0.0400.00715.2250.0630.0630.0000.0000.0000.000
145D408SER00.0290.00516.0850.0410.0410.0000.0000.0000.000
146D409SER00.0030.00117.3260.0000.0000.0000.0000.0000.000
147D410MET0-0.016-0.00519.2730.0200.0200.0000.0000.0000.000
148D411TYR0-0.0080.00220.752-0.005-0.0050.0000.0000.0000.000
149D412PRO00.0180.01224.758-0.006-0.0060.0000.0000.0000.000
150D413LEU0-0.020-0.01823.8610.0170.0170.0000.0000.0000.000
151D414VAL00.0130.01028.144-0.010-0.0100.0000.0000.0000.000
152D415THR0-0.048-0.04028.6060.0060.0060.0000.0000.0000.000
153D416ALA00.0350.01531.2380.0050.0050.0000.0000.0000.000
154D417THR0-0.031-0.01532.378-0.006-0.0060.0000.0000.0000.000
155D418GLN0-0.017-0.01630.239-0.009-0.0090.0000.0000.0000.000
156D419ASP-1-0.795-0.83830.129-0.047-0.0470.0000.0000.0000.000
157D420ALA0-0.006-0.00926.345-0.014-0.0140.0000.0000.0000.000
158D421ASP-1-0.784-0.88727.664-0.050-0.0500.0000.0000.0000.000
159D422SER00.0580.01425.396-0.021-0.0210.0000.0000.0000.000
160D423SER0-0.007-0.00826.980-0.015-0.0150.0000.0000.0000.000
161D424ARG10.7060.82529.2690.0610.0610.0000.0000.0000.000
162D425LYS10.8410.90126.4680.1740.1740.0000.0000.0000.000
163D426LEU00.0220.03820.821-0.015-0.0150.0000.0000.0000.000
164D427ALA00.0350.01824.022-0.013-0.0130.0000.0000.0000.000
165D428HIS0-0.0080.00326.4430.0060.0060.0000.0000.0000.000
166D429LEU00.0140.00121.037-0.007-0.0070.0000.0000.0000.000
167D430LEU00.0220.01820.755-0.018-0.0180.0000.0000.0000.000
168D431ASN00.0160.01123.113-0.001-0.0010.0000.0000.0000.000
169D432ALA0-0.025-0.00424.668-0.004-0.0040.0000.0000.0000.000
170D433VAL00.023-0.00518.717-0.014-0.0140.0000.0000.0000.000
171D434THR0-0.019-0.01221.887-0.004-0.0040.0000.0000.0000.000
172D435ASP-1-0.812-0.90723.894-0.182-0.1820.0000.0000.0000.000
173D436ALA0-0.055-0.02422.1110.0020.0020.0000.0000.0000.000
174D437LEU00.0490.02118.952-0.003-0.0030.0000.0000.0000.000
175D438VAL00.0270.01422.0660.0070.0070.0000.0000.0000.000
176D439TRP00.0460.01925.4500.0040.0040.0000.0000.0000.000
177D440VAL0-0.038-0.01621.0560.0030.0030.0000.0000.0000.000
178D441ILE00.0100.00621.4320.0070.0070.0000.0000.0000.000
179D442ALA0-0.0220.00324.7800.0090.0090.0000.0000.0000.000
180D443LYS10.8260.92026.7780.2370.2370.0000.0000.0000.000
181D444SER0-0.036-0.01723.985-0.002-0.0020.0000.0000.0000.000
182D445GLY00.000-0.00425.8010.0020.0020.0000.0000.0000.000
183D446ILE0-0.038-0.00625.2060.0130.0130.0000.0000.0000.000
184D447SER00.0460.01829.188-0.003-0.0030.0000.0000.0000.000
185D448SER00.0640.02330.6040.0000.0000.0000.0000.0000.000
186D449GLN00.0610.04730.613-0.008-0.0080.0000.0000.0000.000
187D450GLN00.025-0.01027.873-0.004-0.0040.0000.0000.0000.000
188D451GLN0-0.043-0.01526.390-0.004-0.0040.0000.0000.0000.000
189D452SER00.017-0.00325.737-0.008-0.0080.0000.0000.0000.000
190D453MET0-0.024-0.00124.8550.0020.0020.0000.0000.0000.000
191D454ARG10.8470.91320.5170.2280.2280.0000.0000.0000.000
192D455LEU00.0230.01121.265-0.012-0.0120.0000.0000.0000.000
193D456ALA00.0260.01021.545-0.003-0.0030.0000.0000.0000.000
194D457ASN0-0.019-0.02319.4610.0170.0170.0000.0000.0000.000
195D458LEU00.0070.00416.175-0.007-0.0070.0000.0000.0000.000
196D459LEU0-0.010-0.01116.792-0.012-0.0120.0000.0000.0000.000
197D460MET0-0.028-0.00818.0890.0200.0200.0000.0000.0000.000
198D461LEU00.0100.01113.5400.0240.0240.0000.0000.0000.000
199D462LEU00.0070.01312.809-0.039-0.0390.0000.0000.0000.000
200D463SER0-0.026-0.02113.0330.0100.0100.0000.0000.0000.000
201D464HIS0-0.0060.00511.2980.0670.0670.0000.0000.0000.000
202D465VAL00.0000.0027.386-0.010-0.0100.0000.0000.0000.000
203D466ARG10.8020.8798.3850.0320.0320.0000.0000.0000.000
204D467HIS0-0.001-0.0159.6470.1640.1640.0000.0000.0000.000
205D468ALA00.0360.0155.7280.2430.2430.0000.0000.0000.000
206D469SER00.0430.0004.8480.4920.546-0.001-0.004-0.0500.000
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208D471LYS10.8200.9075.837-1.050-1.0500.0000.0000.0000.000
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