FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: P2K8R

Calculation Name: 3BUU-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3BUU

Chain ID: A

ChEMBL ID:

UniProt ID: Q82SR2

Base Structure: X-ray

Registration Date: 2018-03-01

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 225
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2876430.968157
FMO2-HF: Nuclear repulsion 2786240.788669
FMO2-HF: Total energy -90190.179488
FMO2-MP2: Total energy -90454.622423


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:33:ACE)


Summations of interaction energy for fragment #1(A:33:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.5831.499-0.012-0.419-0.485-0.001
Interaction energy analysis for fragmet #1(A:33:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.003 / q_NPA : -0.013
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A35VAL00.0160.0303.8400.8191.735-0.012-0.419-0.485-0.001
4A36THR00.0190.0156.897-0.004-0.0040.0000.0000.0000.000
5A37ALA00.0550.0119.2650.0740.0740.0000.0000.0000.000
6A38GLN00.0360.00711.681-0.012-0.0120.0000.0000.0000.000
7A39SER00.0010.0148.882-0.013-0.0130.0000.0000.0000.000
8A40ILE0-0.022-0.00910.9780.0380.0380.0000.0000.0000.000
9A41LEU0-0.011-0.01012.8690.0370.0370.0000.0000.0000.000
10A42GLU-1-0.912-0.95512.3330.0300.0300.0000.0000.0000.000
11A43LYS10.9470.9778.9350.0470.0470.0000.0000.0000.000
12A44ALA00.0290.01614.6560.0150.0150.0000.0000.0000.000
13A45ASP-1-0.757-0.88017.818-0.039-0.0390.0000.0000.0000.000
14A46GLU-1-0.953-0.97514.7650.0450.0450.0000.0000.0000.000
15A47ILE00.0090.02517.0030.0070.0070.0000.0000.0000.000
16A48ARG10.8650.93320.3040.0390.0390.0000.0000.0000.000
17A49PHE0-0.058-0.04322.6670.0030.0030.0000.0000.0000.000
18A50PRO00.0350.01722.4380.0020.0020.0000.0000.0000.000
19A51GLN0-0.057-0.02919.003-0.003-0.0030.0000.0000.0000.000
20A52ASP-1-0.865-0.93822.3120.0600.0600.0000.0000.0000.000
21A53SER0-0.067-0.02425.518-0.009-0.0090.0000.0000.0000.000
22A54PHE0-0.006-0.01227.0610.0020.0020.0000.0000.0000.000
23A55GLN0-0.0120.00330.913-0.001-0.0010.0000.0000.0000.000
24A56VAL0-0.012-0.00331.9800.0000.0000.0000.0000.0000.000
25A57ASN0-0.0100.00534.3300.0000.0000.0000.0000.0000.000
26A58VAL00.0240.00934.555-0.002-0.0020.0000.0000.0000.000
27A59ALA0-0.036-0.01337.1030.0010.0010.0000.0000.0000.000
28A60ILE00.0220.00037.777-0.002-0.0020.0000.0000.0000.000
29A61ARG10.9400.97240.0420.0190.0190.0000.0000.0000.000
30A62THR00.0920.05541.329-0.003-0.0030.0000.0000.0000.000
31A63ALA0-0.0010.01343.1110.0020.0020.0000.0000.0000.000
32A64ALA00.0360.01844.131-0.002-0.0020.0000.0000.0000.000
33A65PRO0-0.079-0.05546.1630.0010.0010.0000.0000.0000.000
34A66ASP-1-0.907-0.92549.015-0.023-0.0230.0000.0000.0000.000
35A67HIS0-0.086-0.05949.1840.0010.0010.0000.0000.0000.000
36A68ALA0-0.0020.00548.055-0.002-0.0020.0000.0000.0000.000
37A69GLU-1-0.900-0.93845.607-0.019-0.0190.0000.0000.0000.000
38A70ASP-1-0.910-0.94847.962-0.013-0.0130.0000.0000.0000.000
39A71LEU0-0.115-0.06943.152-0.001-0.0010.0000.0000.0000.000
40A72TYR00.0370.01842.8290.0010.0010.0000.0000.0000.000
41A73ARG10.8240.91441.6170.0090.0090.0000.0000.0000.000
42A74TYR00.0660.03238.6940.0010.0010.0000.0000.0000.000
43A75GLN0-0.0050.00238.5290.0010.0010.0000.0000.0000.000
44A76VAL0-0.008-0.00733.3430.0000.0000.0000.0000.0000.000
45A77LEU0-0.053-0.02234.7310.0020.0020.0000.0000.0000.000
46A78SER00.0410.00628.941-0.001-0.0010.0000.0000.0000.000
47A79LYS10.9100.95629.434-0.026-0.0260.0000.0000.0000.000
48A80GLY00.0910.04126.1580.0010.0010.0000.0000.0000.000
49A81ASN00.014-0.01124.885-0.002-0.0020.0000.0000.0000.000
50A82GLU-1-0.961-0.96927.7180.0270.0270.0000.0000.0000.000
51A83ASN0-0.010-0.01229.742-0.004-0.0040.0000.0000.0000.000
52A84SER00.005-0.00332.0060.0010.0010.0000.0000.0000.000
53A85ILE0-0.019-0.01234.3170.0000.0000.0000.0000.0000.000
54A86VAL00.0120.02136.1780.0000.0000.0000.0000.0000.000
55A87MET0-0.019-0.01738.7060.0000.0000.0000.0000.0000.000
56A88ILE00.0000.02442.0040.0000.0000.0000.0000.0000.000
57A89THR00.018-0.01343.5820.0010.0010.0000.0000.0000.000
58A90GLU-1-0.914-0.94145.606-0.007-0.0070.0000.0000.0000.000
59A91PRO00.1560.07345.877-0.001-0.0010.0000.0000.0000.000
60A92ALA0-0.019-0.02749.4730.0010.0010.0000.0000.0000.000
61A93SER0-0.018-0.00351.8240.0010.0010.0000.0000.0000.000
62A94GLU-1-0.881-0.94647.852-0.012-0.0120.0000.0000.0000.000
63A95ARG10.8530.91148.2580.0050.0050.0000.0000.0000.000
64A96GLY00.0340.02547.7370.0000.0000.0000.0000.0000.000
65A97GLN0-0.052-0.01546.1600.0010.0010.0000.0000.0000.000
66A98ALA00.006-0.00643.2040.0000.0000.0000.0000.0000.000
67A99ILE00.0040.00038.8550.0000.0000.0000.0000.0000.000
68A100LEU0-0.0390.00138.4010.0010.0010.0000.0000.0000.000
69A101MET00.0060.02730.808-0.004-0.0040.0000.0000.0000.000
70A102LYS10.9460.97734.889-0.002-0.0020.0000.0000.0000.000
71A103GLY00.0370.01731.456-0.002-0.0020.0000.0000.0000.000
72A104ARG10.8720.91526.5530.0180.0180.0000.0000.0000.000
73A105ASP-1-0.916-0.92433.206-0.009-0.0090.0000.0000.0000.000
74A106LEU00.0130.00635.8000.0020.0020.0000.0000.0000.000
75A107TRP0-0.046-0.04338.9810.0000.0000.0000.0000.0000.000
76A108VAL00.0400.01342.2860.0010.0010.0000.0000.0000.000
77A109PHE0-0.011-0.01943.3150.0010.0010.0000.0000.0000.000
78A110MET00.0660.02947.372-0.001-0.0010.0000.0000.0000.000
79A111PRO00.0780.03650.2600.0010.0010.0000.0000.0000.000
80A112SER0-0.035-0.00553.7990.0000.0000.0000.0000.0000.000
81A113VAL0-0.035-0.01851.2120.0000.0000.0000.0000.0000.000
82A114SER00.0100.00153.3790.0010.0010.0000.0000.0000.000
83A115GLN0-0.069-0.03350.4570.0010.0010.0000.0000.0000.000
84A116PRO0-0.0050.01645.818-0.001-0.0010.0000.0000.0000.000
85A117ILE00.0100.00245.7900.0000.0000.0000.0000.0000.000
86A118ARG10.8340.89739.2300.0080.0080.0000.0000.0000.000
87A119LEU00.0390.03841.799-0.001-0.0010.0000.0000.0000.000
88A120SER0-0.009-0.01837.6940.0010.0010.0000.0000.0000.000
89A121LEU00.0690.02731.6530.0000.0000.0000.0000.0000.000
90A122SER00.0080.01235.0810.0000.0000.0000.0000.0000.000
91A123GLN0-0.0280.00136.0780.0000.0000.0000.0000.0000.000
92A124ARG10.9470.97538.6020.0300.0300.0000.0000.0000.000
93A125LEU0-0.0200.01137.8590.0020.0020.0000.0000.0000.000
94A126THR00.007-0.00640.3710.0010.0010.0000.0000.0000.000
95A127GLY00.0410.04140.431-0.002-0.0020.0000.0000.0000.000
96A128GLN0-0.060-0.05337.458-0.003-0.0030.0000.0000.0000.000
97A129VAL0-0.0190.00235.225-0.003-0.0030.0000.0000.0000.000
98A130ALA0-0.014-0.01134.4620.0020.0020.0000.0000.0000.000
99A131ASN00.016-0.01535.5610.0010.0010.0000.0000.0000.000
100A132GLY0-0.010-0.02432.5840.0020.0020.0000.0000.0000.000
101A133ASP-1-0.776-0.86131.050-0.041-0.0410.0000.0000.0000.000
102A134ILE0-0.045-0.02231.4930.0000.0000.0000.0000.0000.000
103A135ALA0-0.022-0.00832.7930.0030.0030.0000.0000.0000.000
104A136ARG10.7380.82727.8920.0210.0210.0000.0000.0000.000
105A137ALA0-0.0040.01325.914-0.001-0.0010.0000.0000.0000.000
106A138ASN00.0180.00721.884-0.007-0.0070.0000.0000.0000.000
107A139PHE00.001-0.00221.1930.0010.0010.0000.0000.0000.000
108A140THR00.003-0.02517.640-0.008-0.0080.0000.0000.0000.000
109A141GLY0-0.035-0.01120.1480.0120.0120.0000.0000.0000.000
110A142ASP-1-0.791-0.86422.056-0.022-0.0220.0000.0000.0000.000
111A143TYR0-0.009-0.00822.0570.0000.0000.0000.0000.0000.000
112A144HIS0-0.0090.00417.6480.0120.0120.0000.0000.0000.000
113A145PRO0-0.0180.00015.743-0.001-0.0010.0000.0000.0000.000
114A146GLN0-0.007-0.01116.457-0.008-0.0080.0000.0000.0000.000
115A147LEU0-0.021-0.00314.3610.0120.0120.0000.0000.0000.000
116A148LEU0-0.051-0.01217.1070.0050.0050.0000.0000.0000.000
117A149ARG10.8150.86719.9130.1530.1530.0000.0000.0000.000
118A150ASN00.0610.02615.421-0.007-0.0070.0000.0000.0000.000
119A151GLU-1-0.792-0.87419.486-0.123-0.1230.0000.0000.0000.000
120A152SER00.0410.02921.746-0.011-0.0110.0000.0000.0000.000
121A153ILE0-0.105-0.05123.7010.0130.0130.0000.0000.0000.000
122A154ASP-1-0.936-0.98026.000-0.089-0.0890.0000.0000.0000.000
123A155ASP-1-0.977-0.97824.787-0.113-0.1130.0000.0000.0000.000
124A156GLU-1-0.879-0.92021.850-0.144-0.1440.0000.0000.0000.000
125A157ASP-1-0.892-0.94418.174-0.229-0.2290.0000.0000.0000.000
126A158TYR0-0.058-0.03718.816-0.003-0.0030.0000.0000.0000.000
127A159TYR00.0500.01611.304-0.056-0.0560.0000.0000.0000.000
128A160VAL0-0.026-0.00617.4470.0300.0300.0000.0000.0000.000
129A161LEU0-0.001-0.01015.521-0.019-0.0190.0000.0000.0000.000
130A162GLU-1-0.914-0.97119.536-0.105-0.1050.0000.0000.0000.000
131A163LEU0-0.035-0.01719.858-0.007-0.0070.0000.0000.0000.000
132A164THR0-0.002-0.00722.5410.0110.0110.0000.0000.0000.000
133A165GLY0-0.010-0.00724.2320.0020.0020.0000.0000.0000.000
134A166ILE0-0.009-0.00622.5530.0000.0000.0000.0000.0000.000
135A167ASP-1-0.823-0.91926.375-0.024-0.0240.0000.0000.0000.000
136A168ARG10.9310.94530.2260.0260.0260.0000.0000.0000.000
137A169SER0-0.093-0.03232.3340.0020.0020.0000.0000.0000.000
138A170VAL00.0020.02927.7610.0030.0030.0000.0000.0000.000
139A171THR0-0.018-0.02230.2870.0010.0010.0000.0000.0000.000
140A172TYR0-0.011-0.03529.2240.0010.0010.0000.0000.0000.000
141A173GLN0-0.053-0.04429.395-0.001-0.0010.0000.0000.0000.000
142A174LYS10.9811.00526.7690.0940.0940.0000.0000.0000.000
143A175VAL0-0.0110.00725.2370.0070.0070.0000.0000.0000.000
144A176LEU0-0.055-0.00324.040-0.010-0.0100.0000.0000.0000.000
145A177LEU00.0260.00819.8500.0130.0130.0000.0000.0000.000
146A178TRP0-0.071-0.03820.896-0.019-0.0190.0000.0000.0000.000
147A179VAL0-0.014-0.01216.1400.0190.0190.0000.0000.0000.000
148A180ASN00.0040.01317.879-0.045-0.0450.0000.0000.0000.000
149A181GLN00.005-0.01714.468-0.011-0.0110.0000.0000.0000.000
150A182SER0-0.030-0.00713.906-0.025-0.0250.0000.0000.0000.000
151A183ASN00.003-0.02614.986-0.002-0.0020.0000.0000.0000.000
152A184PHE00.019-0.0019.8810.0130.0130.0000.0000.0000.000
153A185ARG10.9701.00215.8400.0830.0830.0000.0000.0000.000
154A186PRO0-0.0150.01019.567-0.017-0.0170.0000.0000.0000.000
155A187TYR00.0240.00621.6040.0090.0090.0000.0000.0000.000
156A188LYS10.9550.97024.0440.1170.1170.0000.0000.0000.000
157A189ALA0-0.040-0.01324.809-0.012-0.0120.0000.0000.0000.000
158A190GLU-1-0.852-0.90426.911-0.089-0.0890.0000.0000.0000.000
159A191PHE0-0.008-0.00328.423-0.005-0.0050.0000.0000.0000.000
160A192TYR0-0.013-0.03628.9930.0050.0050.0000.0000.0000.000
161A193SER00.002-0.00532.3470.0020.0020.0000.0000.0000.000
162A194VAL00.018-0.00533.666-0.003-0.0030.0000.0000.0000.000
163A195SER0-0.047-0.02034.925-0.001-0.0010.0000.0000.0000.000
164A196GLY00.0280.00832.910-0.001-0.0010.0000.0000.0000.000
165A197ARG10.8760.94633.9020.0480.0480.0000.0000.0000.000
166A198LEU00.0540.03032.2140.0010.0010.0000.0000.0000.000
167A199LEU0-0.068-0.04434.4860.0040.0040.0000.0000.0000.000
168A200LYS10.8850.94933.2140.0460.0460.0000.0000.0000.000
169A201THR0-0.0020.01131.545-0.004-0.0040.0000.0000.0000.000
170A202SER0-0.006-0.00128.6420.0030.0030.0000.0000.0000.000
171A203ARG10.9480.97528.7900.0470.0470.0000.0000.0000.000
172A204TYR00.0000.00125.3210.0090.0090.0000.0000.0000.000
173A205GLU-1-0.850-0.94427.853-0.055-0.0550.0000.0000.0000.000
174A206ASN0-0.012-0.01629.7520.0010.0010.0000.0000.0000.000
175A207PHE0-0.006-0.00923.2030.0030.0030.0000.0000.0000.000
176A208ASP-1-0.882-0.94227.755-0.009-0.0090.0000.0000.0000.000
177A209ASN0-0.015-0.00825.6890.0010.0010.0000.0000.0000.000
178A210ILE00.0150.00326.1660.0040.0040.0000.0000.0000.000
179A211LEU0-0.048-0.02925.5700.0000.0000.0000.0000.0000.000
180A212GLY00.0230.01422.5000.0030.0030.0000.0000.0000.000
181A213GLU-1-0.886-0.91918.4190.0120.0120.0000.0000.0000.000
182A214MET0-0.071-0.02221.9000.0010.0010.0000.0000.0000.000
183A215ARG10.8350.89622.055-0.012-0.0120.0000.0000.0000.000
184A216PRO0-0.058-0.00424.2370.0010.0010.0000.0000.0000.000
185A217THR0-0.016-0.01927.3120.0040.0040.0000.0000.0000.000
186A218ARG10.8630.91330.7300.0320.0320.0000.0000.0000.000
187A219ILE0-0.042-0.01528.375-0.005-0.0050.0000.0000.0000.000
188A220ILE0-0.064-0.01731.7730.0040.0040.0000.0000.0000.000
189A221MET0-0.018-0.01231.333-0.004-0.0040.0000.0000.0000.000
190A222GLU-1-0.931-0.95834.859-0.048-0.0480.0000.0000.0000.000
191A223ASP-1-0.748-0.85736.394-0.042-0.0420.0000.0000.0000.000
192A224ALA0-0.026-0.00636.190-0.001-0.0010.0000.0000.0000.000
193A225LEU0-0.101-0.05238.2980.0000.0000.0000.0000.0000.000
194A226LYS10.9220.93741.6860.0350.0350.0000.0000.0000.000
195A227SER0-0.049-0.03643.1250.0020.0020.0000.0000.0000.000
196A228GLY00.0360.02043.9130.0010.0010.0000.0000.0000.000
197A229GLU-1-0.904-0.94242.397-0.028-0.0280.0000.0000.0000.000
198A230VAL00.006-0.00238.115-0.003-0.0030.0000.0000.0000.000
199A231SER0-0.030-0.02837.8330.0030.0030.0000.0000.0000.000
200A232VAL0-0.026-0.01536.695-0.003-0.0030.0000.0000.0000.000
201A233LEU0-0.030-0.01533.5050.0030.0030.0000.0000.0000.000
202A234ASP-1-0.800-0.88434.400-0.027-0.0270.0000.0000.0000.000
203A235TYR00.0030.00231.8580.0030.0030.0000.0000.0000.000
204A236SER0-0.011-0.01934.0150.0010.0010.0000.0000.0000.000
205A237ASP-1-0.832-0.93035.5390.0070.0070.0000.0000.0000.000
206A238MET0-0.0130.01428.0710.0020.0020.0000.0000.0000.000
207A239LYS10.8400.92731.870-0.008-0.0080.0000.0000.0000.000
208A240LEU00.0520.02326.887-0.002-0.0020.0000.0000.0000.000
209A241ARG10.8720.92630.949-0.016-0.0160.0000.0000.0000.000
210A242ASP-1-0.864-0.92832.4100.0360.0360.0000.0000.0000.000
211A243LEU0-0.033-0.00932.237-0.004-0.0040.0000.0000.0000.000
212A244PRO00.0420.01134.1390.0010.0010.0000.0000.0000.000
213A245ASP-1-0.891-0.96234.9570.0200.0200.0000.0000.0000.000
214A246LYS10.9450.95936.319-0.026-0.0260.0000.0000.0000.000
215A247ILE00.0040.01637.184-0.001-0.0010.0000.0000.0000.000
216A248PHE00.0020.01634.511-0.003-0.0030.0000.0000.0000.000
217A249THR0-0.043-0.02939.085-0.001-0.0010.0000.0000.0000.000
218A250LYS10.9290.95142.486-0.002-0.0020.0000.0000.0000.000
219A251ASP-1-0.901-0.94045.4890.0070.0070.0000.0000.0000.000
220A252TYR0-0.031-0.00741.6330.0000.0000.0000.0000.0000.000
221A253LEU00.002-0.01041.8030.0000.0000.0000.0000.0000.000
222A254LYS10.9270.98046.090-0.004-0.0040.0000.0000.0000.000
223A255ARG10.8900.94244.256-0.005-0.0050.0000.0000.0000.000
224A256LEU0-0.027-0.02551.051-0.001-0.0010.0000.0000.0000.000
225A257GLU-2-1.914-1.92749.8970.0030.0030.0000.0000.0000.000