FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: P2QRX

Calculation Name: 4AAC-A-Xray12

Preferred Name: MAP kinase p38 alpha

Target Type: SINGLE PROTEIN

Ligand Name: n-isoxazol-3-yl-4-methyl-3-[6-(4-methylpiperazin-1-yl)-4-oxo-quinazolin-3-yl]benzamide

ligand 3-letter code: AAV

PDB ID: 4AAC

Chain ID: A

ChEMBL ID: CHEMBL260

UniProt ID: Q16539

Base Structure: X-ray

Registration Date: 2017-08-22

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 347
LigandResidueName AAV
LigandFragmentNumber 347
LigandCharge AAV=1
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5815851.645603
FMO2-HF: Nuclear repulsion 5675422.016474
FMO2-HF: Total energy -140429.629129
FMO2-MP2: Total energy -140839.918517


3D Structure
Snapshot
 
Ligand structure

AAV

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-253.683-230.15799.137-38.779-83.8890.083


Interactive mode: IFIE and PIEDA for fragment #347(A:1360:AAV)


Summations of interaction energy for fragment #347(A:1360:AAV)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-253.683-230.15799.137-38.779-83.889-0.083
Interaction energy analysis for fragmet #347(A:1360:AAV)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.916 / q_NPA : 0.963
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A6PRO10.8510.90016.04412.54612.5460.0000.0000.0000.000
2A7THR00.0980.06918.7710.2480.2480.0000.0000.0000.000
3A8PHE00.0100.01713.538-0.473-0.4730.0000.0000.0000.000
4A9TYR0-0.045-0.02714.4620.7180.7180.0000.0000.0000.000
5A10ARG10.9010.91416.06312.73312.7330.0000.0000.0000.000
6A11GLN00.0190.00914.7420.1070.1070.0000.0000.0000.000
7A12GLU-1-0.947-0.97015.975-16.144-16.1440.0000.0000.0000.000
8A13LEU0-0.024-0.01911.726-0.249-0.2490.0000.0000.0000.000
9A14ASN0-0.011-0.00610.505-0.444-0.4440.0000.0000.0000.000
10A15LYS10.9720.96912.87916.13816.1380.0000.0000.0000.000
11A16THR0-0.0090.02111.7311.2051.2050.0000.0000.0000.000
12A17ILE00.0730.04015.0270.2150.2150.0000.0000.0000.000
13A18TRP0-0.0100.0056.510-0.371-0.3710.0000.0000.0000.000
14A19GLU-1-0.859-0.90913.064-12.842-12.8420.0000.0000.0000.000
15A20VAL00.017-0.0049.838-0.549-0.5490.0000.0000.0000.000
16A21PRO0-0.014-0.00611.6700.8670.8670.0000.0000.0000.000
17A22GLU-1-0.886-0.95914.179-12.662-12.6620.0000.0000.0000.000
18A23ARG10.8450.92112.52216.19716.1970.0000.0000.0000.000
19A24TYR0-0.049-0.02810.210-0.419-0.4190.0000.0000.0000.000
20A25GLN00.0090.00412.5990.3640.3640.0000.0000.0000.000
21A26ASN0-0.046-0.04612.861-1.036-1.0360.0000.0000.0000.000
22A27LEU00.0280.0249.932-1.269-1.2690.0000.0000.0000.000
23A28SER0-0.018-0.0049.3060.9500.9500.0000.0000.0000.000
24A29PRO0-0.014-0.0177.246-2.652-2.6520.0000.0000.0000.000
25A30VAL00.0470.0322.843-1.7281.2020.616-0.909-2.6370.004
26A31GLY0-0.0030.0032.129-25.518-27.08311.057-4.186-5.307-0.061
27A32SER0-0.055-0.0442.9663.0353.4080.6250.536-1.534-0.005
28A33GLY00.1010.0542.187-21.370-19.1095.215-2.801-4.675-0.026
29A34ALA00.0000.0033.654-0.5160.1530.022-0.011-0.6800.001
30A35TYR00.0010.0045.0100.2000.2000.0000.0000.0000.000
31A36GLY00.0330.0067.2652.0932.0930.0000.0000.0000.000
32A37SER0-0.040-0.0046.021-2.196-2.1960.0000.0000.0000.000
33A38VAL00.0480.0232.448-2.4281.7493.728-1.749-6.1560.021
34A39CYS0-0.071-0.0204.864-2.014-1.742-0.001-0.016-0.2550.000
35A40ALA00.0360.0286.0270.2980.2980.0000.0000.0000.000
36A41ALA00.0020.0027.3021.5511.5510.0000.0000.0000.000
37A42PHE0-0.022-0.0039.568-0.574-0.5740.0000.0000.0000.000
38A43ASP-1-0.736-0.86210.698-16.558-16.5580.0000.0000.0000.000
39A44THR0-0.024-0.03512.5760.8360.8360.0000.0000.0000.000
40A45LYS10.8850.96015.29013.22713.2270.0000.0000.0000.000
41A46THR00.021-0.01412.9940.5150.5150.0000.0000.0000.000
42A47GLY0-0.0080.01915.7190.3350.3350.0000.0000.0000.000
43A48LEU00.0200.01310.414-0.437-0.4370.0000.0000.0000.000
44A49ARG10.9370.9708.35023.19823.1980.0000.0000.0000.000
45A50VAL00.0240.0076.268-0.084-0.0840.0000.0000.0000.000
46A51ALA0-0.014-0.0042.354-2.270-0.5241.866-1.027-2.5860.005
47A52VAL0-0.003-0.0073.248-1.712-0.5560.164-0.405-0.914-0.003
48A53LYS10.8090.8632.38128.32332.7013.829-2.345-5.8630.017
49A54LYS10.8410.9253.64120.19620.3430.0150.059-0.2200.000
50A55LEU0-0.006-0.0035.691-0.629-0.6290.0000.0000.0000.000
51A56SER0-0.036-0.0218.4921.7951.7950.0000.0000.0000.000
52A57ARG10.9610.97111.89117.03717.0370.0000.0000.0000.000
53A58PRO00.0550.05910.6350.3640.3640.0000.0000.0000.000
54A59PHE00.0770.01611.8770.2090.2090.0000.0000.0000.000
55A60GLN0-0.0060.00214.7991.1131.1130.0000.0000.0000.000
56A61SER00.002-0.00815.4690.4000.4000.0000.0000.0000.000
57A62ILE00.1070.05414.958-0.560-0.5600.0000.0000.0000.000
58A63ILE0-0.0020.01512.292-0.418-0.4180.0000.0000.0000.000
59A64HIS0-0.135-0.08610.941-0.893-0.8930.0000.0000.0000.000
60A65ALA00.0430.02610.250-0.884-0.8840.0000.0000.0000.000
61A66LYS10.8570.93210.68012.65812.6580.0000.0000.0000.000
62A67ARG10.8410.9396.54019.56019.5600.0000.0000.0000.000
63A68THR0-0.025-0.0135.845-2.280-2.2800.0000.0000.0000.000
64A69TYR00.0050.0136.837-0.840-0.8400.0000.0000.0000.000
65A70ARG10.8200.8864.14717.31317.472-0.001-0.017-0.1410.000
66A71GLU-1-0.798-0.8621.740-57.559-64.23121.822-6.671-8.478-0.055
67A72LEU00.0130.0003.4770.5500.5630.0030.352-0.3690.000
68A73ARG10.9040.9576.53114.72114.7210.0000.0000.0000.000
69A74LEU0-0.037-0.0142.222-0.653-0.2692.297-0.704-1.978-0.005
70A75LEU0-0.008-0.0192.195-2.079-0.2175.355-1.300-5.9170.004
71A76LYS10.7880.8765.58514.87214.917-0.001-0.002-0.0430.000
72A77HIS0-0.068-0.0158.3040.5120.5120.0000.0000.0000.000
73A78MET0-0.080-0.0165.8560.6450.6450.0000.0000.0000.000
74A79LYS10.9300.9618.63812.17612.1760.0000.0000.0000.000
75A80HIS00.1170.05611.0240.0970.0970.0000.0000.0000.000
76A81GLU-1-0.867-0.92911.319-13.770-13.7700.0000.0000.0000.000
77A82ASN0-0.0010.00911.594-0.304-0.3040.0000.0000.0000.000
78A83VAL0-0.031-0.0056.356-0.381-0.3810.0000.0000.0000.000
79A84ILE0-0.083-0.0162.654-3.682-1.1720.941-0.942-2.5090.011
80A85GLY00.0810.0335.7731.8842.127-0.001-0.007-0.2350.000
81A86LEU0-0.104-0.0505.155-2.824-2.8240.0000.0000.0000.000
82A87LEU0-0.003-0.0037.0431.3321.3320.0000.0000.0000.000
83A88ASP-1-0.840-0.9167.517-15.758-15.7580.0000.0000.0000.000
84A89VAL0-0.0170.0077.040-2.323-2.3230.0000.0000.0000.000
85A90PHE0-0.017-0.0038.4421.4381.4380.0000.0000.0000.000
86A91THR0-0.009-0.03610.493-0.698-0.6980.0000.0000.0000.000
87A92PRO0-0.0030.00513.3060.3830.3830.0000.0000.0000.000
88A93ALA0-0.0090.01116.3140.6310.6310.0000.0000.0000.000
89A94ARG10.9530.96518.46010.75410.7540.0000.0000.0000.000
90A95SER00.0130.00920.8980.3270.3270.0000.0000.0000.000
91A96LEU00.0570.02419.270-0.391-0.3910.0000.0000.0000.000
92A97GLU-1-0.953-0.97621.050-9.796-9.7960.0000.0000.0000.000
93A98GLU-1-0.967-0.97821.428-11.065-11.0650.0000.0000.0000.000
94A99PHE0-0.072-0.02213.116-0.600-0.6000.0000.0000.0000.000
95A100ASN0-0.030-0.04716.561-0.192-0.1920.0000.0000.0000.000
96A101ASP-1-0.956-0.95812.278-17.525-17.5250.0000.0000.0000.000
97A102VAL00.0230.0067.6950.6240.6240.0000.0000.0000.000
98A103TYR00.0240.0156.819-1.061-1.0610.0000.0000.0000.000
99A104LEU00.0010.0022.525-0.0631.1490.351-0.267-1.296-0.001
100A105VAL00.0120.0173.142-4.994-3.5590.093-0.694-0.835-0.006
101A106THR00.0410.0122.375-9.340-5.4843.978-2.175-5.659-0.022
102A107HIS00.0940.0364.521-0.423-0.093-0.001-0.013-0.3160.000
103A108LEU0-0.044-0.0172.541-4.037-2.5360.345-0.418-1.4280.001
104A109MET00.0050.0103.5091.2311.7870.003-0.125-0.4340.000
105A110GLY00.0170.0093.864-5.105-4.5860.002-0.159-0.363-0.001
106A111ALA0-0.037-0.0134.864-4.538-4.5380.0000.0000.0000.000
107A112ASP-1-0.812-0.9233.235-58.372-57.1340.047-0.523-0.762-0.004
108A113LEU00.014-0.0036.3041.2141.2140.0000.0000.0000.000
109A114ASN0-0.056-0.0236.0606.2116.2110.0000.0000.0000.000
110A115ASN0-0.081-0.0373.870-1.185-1.0010.000-0.022-0.1620.000
111A116ILE0-0.0040.0027.5262.8622.8620.0000.0000.0000.000
112A117VAL00.0450.02010.6722.0602.0600.0000.0000.0000.000
113A118LYS10.8590.93010.82422.76822.7680.0000.0000.0000.000
114A119CYS0-0.050-0.01611.9710.7480.7480.0000.0000.0000.000
115A120GLN00.0330.02113.5901.6011.6010.0000.0000.0000.000
116A121LYS10.8800.94116.26814.32414.3240.0000.0000.0000.000
117A122LEU00.0090.02415.7500.2170.2170.0000.0000.0000.000
118A123THR00.0100.00719.4970.5540.5540.0000.0000.0000.000
119A124ASP-1-0.758-0.88222.206-11.750-11.7500.0000.0000.0000.000
120A125ASP-1-0.869-0.90823.342-12.251-12.2510.0000.0000.0000.000
121A126HIS00.0680.02717.9990.0770.0770.0000.0000.0000.000
122A127VAL0-0.046-0.02319.150-0.634-0.6340.0000.0000.0000.000
123A128GLN0-0.036-0.04020.290-0.146-0.1460.0000.0000.0000.000
124A129PHE00.0770.05016.757-0.108-0.1080.0000.0000.0000.000
125A130LEU00.002-0.00413.844-0.368-0.3680.0000.0000.0000.000
126A131ILE0-0.008-0.01816.383-0.291-0.2910.0000.0000.0000.000
127A132TYR0-0.027-0.03117.610-0.040-0.0400.0000.0000.0000.000
128A133GLN00.006-0.00914.678-0.217-0.2170.0000.0000.0000.000
129A134ILE0-0.025-0.01012.2600.0640.0640.0000.0000.0000.000
130A135LEU0-0.003-0.00713.5450.3000.3000.0000.0000.0000.000
131A136ARG10.8510.92115.96012.76412.7640.0000.0000.0000.000
132A137GLY00.012-0.01111.8200.2430.2430.0000.0000.0000.000
133A138LEU0-0.074-0.04410.3160.2410.2410.0000.0000.0000.000
134A139LYS10.9190.97212.24010.65610.6560.0000.0000.0000.000
135A140TYR00.0410.0409.6910.3090.3090.0000.0000.0000.000
136A141ILE0-0.0030.0077.0740.1110.1110.0000.0000.0000.000
137A142HIS0-0.094-0.07010.0590.4100.4100.0000.0000.0000.000
138A143SER0-0.054-0.02112.9850.2710.2710.0000.0000.0000.000
139A144ALA00.0300.01311.0790.2900.2900.0000.0000.0000.000
140A145ASP-1-0.929-0.97911.793-11.024-11.0240.0000.0000.0000.000
141A146ILE0-0.051-0.0056.015-0.489-0.4890.0000.0000.0000.000
142A147ILE0-0.033-0.0289.1250.2270.2270.0000.0000.0000.000
143A148HIS0-0.010-0.0046.635-0.521-0.5210.0000.0000.0000.000
144A149ARG10.8970.9207.85113.52613.5260.0000.0000.0000.000
145A150ASP-1-0.814-0.9219.556-21.760-21.7600.0000.0000.0000.000
146A151LEU00.0670.05610.091-1.329-1.3290.0000.0000.0000.000
147A152LYS10.8270.8948.32827.30527.3050.0000.0000.0000.000
148A153PRO00.0520.0289.909-1.016-1.0160.0000.0000.0000.000
149A154SER0-0.029-0.0185.1610.4630.4630.0000.0000.0000.000
150A155ASN0-0.017-0.0045.314-4.610-4.6100.0000.0000.0000.000
151A156LEU00.0160.0146.6583.5543.5540.0000.0000.0000.000
152A157ALA00.0480.0204.769-1.798-1.611-0.001-0.017-0.1700.000
153A158VAL0-0.005-0.0126.7183.3723.3720.0000.0000.0000.000
154A159ASN0-0.068-0.0297.791-3.449-3.4490.0000.0000.0000.000
155A160GLU-1-0.946-0.9919.836-21.244-21.2440.0000.0000.0000.000
156A161ASP-1-0.887-0.94912.614-14.546-14.5460.0000.0000.0000.000
157A162CYS0-0.110-0.05213.4240.6420.6420.0000.0000.0000.000
158A163GLU-1-0.871-0.90912.443-16.059-16.0590.0000.0000.0000.000
159A164LEU0-0.020-0.00810.416-1.825-1.8250.0000.0000.0000.000
160A165LYS10.8460.9086.95819.55519.5550.0000.0000.0000.000
161A166ILE0-0.016-0.0066.146-2.237-2.2370.0000.0000.0000.000
162A167LEU0-0.025-0.0192.213-3.2221.0303.431-1.931-5.7520.012
163A168ASP-1-0.907-0.9841.613-34.513-43.62425.727-9.093-7.5220.027
164A169PHE0-0.0040.0033.229-6.820-5.4350.5751.125-3.0840.006
165A170GLY00.0600.0182.586-6.526-5.2231.661-1.070-1.894-0.013
166A171LEU0-0.045-0.0162.189-1.895-2.3245.376-1.248-3.6990.010
167A172ALA0-0.029-0.0124.9970.7740.794-0.001-0.004-0.0160.000
168A173ARG10.9060.9568.68014.14814.1480.0000.0000.0000.000
169A174HIS00.0260.0187.9260.4480.4480.0000.0000.0000.000
170A175THR0-0.0120.00512.4080.5110.5110.0000.0000.0000.000
171A176ASP-1-0.938-0.98216.005-11.489-11.4890.0000.0000.0000.000
172A177ASP-1-0.917-0.95418.503-10.642-10.6420.0000.0000.0000.000
173A178GLU-1-0.843-0.91413.274-13.592-13.5920.0000.0000.0000.000
174A179MET0-0.042-0.02614.275-0.227-0.2270.0000.0000.0000.000
175A180THR00.0410.0048.8650.0890.0890.0000.0000.0000.000
176A181GLY0-0.025-0.02510.005-0.900-0.9000.0000.0000.0000.000
177A182TYR0-0.0320.0006.575-1.324-1.3240.0000.0000.0000.000
178A183VAL0-0.035-0.01510.3031.2701.2700.0000.0000.0000.000
179A184ALA00.0120.00811.631-1.228-1.2280.0000.0000.0000.000
180A185THR0-0.057-0.03311.211-1.031-1.0310.0000.0000.0000.000
181A186ARG10.8790.93313.61815.86615.8660.0000.0000.0000.000
182A187TRP0-0.027-0.01713.8820.1370.1370.0000.0000.0000.000
183A188TYR0-0.003-0.02712.919-0.022-0.0220.0000.0000.0000.000
184A189ARG10.8720.95613.10316.34416.3440.0000.0000.0000.000
185A190ALA00.0490.02917.2190.3570.3570.0000.0000.0000.000
186A191PRO00.0100.00819.205-0.046-0.0460.0000.0000.0000.000
187A192GLU-1-0.780-0.89319.688-11.569-11.5690.0000.0000.0000.000
188A193ILE00.0140.01115.3860.0400.0400.0000.0000.0000.000
189A194MET0-0.116-0.03418.039-0.536-0.5360.0000.0000.0000.000
190A195LEU0-0.062-0.05319.9660.0850.0850.0000.0000.0000.000
191A196ASN00.0060.01819.1210.0710.0710.0000.0000.0000.000
192A197TRP0-0.014-0.00621.9130.3650.3650.0000.0000.0000.000
193A198MET0-0.029-0.00623.5190.3300.3300.0000.0000.0000.000
194A199HIS0-0.032-0.02221.812-0.292-0.2920.0000.0000.0000.000
195A200TYR0-0.013-0.02313.893-0.194-0.1940.0000.0000.0000.000
196A201ASN00.0760.07817.090-0.307-0.3070.0000.0000.0000.000
197A202GLN00.0830.02713.603-0.181-0.1810.0000.0000.0000.000
198A203THR0-0.044-0.05115.135-0.446-0.4460.0000.0000.0000.000
199A204VAL0-0.029-0.02413.746-0.092-0.0920.0000.0000.0000.000
200A205ASP-1-0.697-0.83011.294-14.995-14.9950.0000.0000.0000.000
201A206ILE00.0120.00914.185-0.441-0.4410.0000.0000.0000.000
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