FMODB ID: P2YYR
Calculation Name: 1L2Y-A-MD53-13300ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-13
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -22953.043914 |
---|---|
FMO2-HF: Nuclear repulsion | 18350.823523 |
FMO2-HF: Total energy | -4602.22039 |
FMO2-MP2: Total energy | -4615.648239 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-62.051 | -53.423 | 3.65 | -4.66 | -7.62 | -0.023 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.016 | 0.031 | 2.594 | 8.056 | 10.402 | 0.139 | -0.941 | -1.546 | -0.001 | |
4 | 4 | GLN | 0 | -0.043 | -0.032 | 2.441 | -23.226 | -21.355 | 1.668 | -1.654 | -1.886 | -0.019 | |
5 | 5 | GLN | 0 | 0.042 | 0.022 | 2.625 | -11.968 | -7.912 | 1.844 | -1.978 | -3.922 | -0.003 | |
6 | 6 | GLN | 0 | 0.048 | 0.029 | 5.024 | 2.039 | 2.030 | -0.001 | -0.003 | 0.013 | 0.000 | |
7 | 7 | GLN | 0 | -0.015 | -0.016 | 8.667 | -0.767 | -0.767 | 0.000 | 0.000 | 0.000 | 0.000 | |
8 | 8 | GLN | 0 | -0.047 | -0.042 | 11.079 | 1.256 | 1.256 | 0.000 | 0.000 | 0.000 | 0.000 | |
9 | 9 | GLN | 0 | -0.067 | -0.019 | 8.899 | 1.697 | 1.697 | 0.000 | 0.000 | 0.000 | 0.000 | |
10 | 10 | GLN | -1 | -0.899 | -0.933 | 4.061 | -39.138 | -38.774 | 0.000 | -0.084 | -0.279 | 0.000 |