FMODB: The database of quantum mechanical data based on the FMO method
Last updated: 2024-07-23
All entries: 37478
Number of unique PDB entries: 7783
FMODB ID: P34LL
Calculation Name: 1L2Y-A-MD50-65800ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-09
Reference:
Apendix: None
Modeling method
| Optimization | BaseStructure_original |
|---|---|
| Restraint | BaseStructure_original |
| Protonation | BaseStructure_original |
| Complement | No |
| Water | No |
| Procedure | Manual calculation |
FMO calculation
| FMO method | FMO2-MP2/6-31G(d) |
|---|---|
| Fragmentation | Auto |
| Number of fragment | 10 |
| LigandResidueName | |
| LigandFragmentNumber | 0 |
| LigandCharge | |
| Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
| FMO2-HF: Electronic energy | -22810.443502 |
|---|---|
| FMO2-HF: Nuclear repulsion | 18208.318998 |
| FMO2-HF: Total energy | -4602.124504 |
| FMO2-MP2: Total energy | -4615.540272 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| -52.081 | -40.673 | 5.09 | -6.321 | -10.18 | -0.022 |
Interaction energy analysis for fragmet #1(:1:GLN )
| frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | 3 | GLN | 0 | -0.002 | 0.009 | 2.787 | 9.166 | 12.710 | 0.194 | -1.497 | -2.242 | -0.005 | |
| 4 | 4 | GLN | 0 | 0.072 | 0.031 | 2.332 | -19.491 | -16.636 | 1.548 | -2.175 | -2.227 | -0.031 | |
| 5 | 5 | GLN | 0 | -0.018 | -0.008 | 3.264 | -3.294 | -1.642 | 0.448 | -0.671 | -1.430 | -0.002 | |
| 6 | 6 | GLN | 0 | 0.024 | 0.010 | 2.370 | -13.906 | -10.645 | 2.805 | -1.996 | -4.071 | 0.014 | |
| 7 | 7 | GLN | 0 | -0.042 | -0.021 | 3.361 | 3.899 | 3.995 | 0.095 | 0.018 | -0.210 | 0.002 | |
| 8 | 8 | GLN | 0 | 0.017 | 0.006 | 6.312 | -0.808 | -0.808 | 0.000 | 0.000 | 0.000 | 0.000 | |
| 9 | 9 | GLN | 0 | -0.052 | -0.037 | 9.475 | 0.615 | 0.615 | 0.000 | 0.000 | 0.000 | 0.000 | |
| 10 | 10 | GLN | -1 | -0.923 | -0.935 | 8.421 | -28.262 | -28.262 | 0.000 | 0.000 | 0.000 | 0.000 |