FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: P34LX

Calculation Name: 4FST-A-Xray10

Preferred Name: Serine/threonine-protein kinase Chk1

Target Type: SINGLE PROTEIN

Ligand Name: 4-[(6,7-dimethoxy-2,4-dihydroindeno[1,2-c]pyrazol-3-yl)ethynyl]-2-methoxyphenol

ligand 3-letter code: HK4

PDB ID: 4FST

Chain ID: A

ChEMBL ID: CHEMBL4630

UniProt ID: O14757

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 262
LigandResidueName HK4
LigandFragmentNumber 262
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3738630.776772
FMO2-HF: Nuclear repulsion 3631123.108005
FMO2-HF: Total energy -107507.668767
FMO2-MP2: Total energy -107819.579439


3D Structure
Snapshot
 
Ligand structure

HK4

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-114.308-85.14190.246-35.250-84.157-0.010


Interactive mode: IFIE and PIEDA for fragment #262(A:301:HK4)


Summations of interaction energy for fragment #262(A:301:HK4)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-114.308-85.14190.246-35.25-84.1570.01
Interaction energy analysis for fragmet #262(A:301:HK4)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.008 / q_NPA : 0.016
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A9TRP10.7580.86210.915-0.869-0.8690.0000.0000.0000.000
2A10ASP-1-0.829-0.90714.6830.5710.5710.0000.0000.0000.000
3A11LEU0-0.022-0.01511.0370.1910.1910.0000.0000.0000.000
4A12VAL00.004-0.0078.591-0.191-0.1910.0000.0000.0000.000
5A13GLN0-0.009-0.0015.979-0.376-0.3760.0000.0000.0000.000
6A14THR00.0100.0036.5960.7180.7180.0000.0000.0000.000
7A15LEU0-0.077-0.0432.648-5.429-1.4535.980-2.188-7.7680.026
8A16GLY00.0610.0252.364-6.760-5.8962.068-1.009-1.922-0.016
9A17GLU-1-0.934-0.9704.7740.6640.705-0.001-0.014-0.0270.000
10A18GLY00.019-0.0048.456-0.455-0.4550.0000.0000.0000.000
11A19ALA0-0.026-0.0058.4090.3440.3440.0000.0000.0000.000
12A20TYR0-0.029-0.0347.0430.1060.1060.0000.0000.0000.000
13A21GLY00.0110.0228.1300.3460.3460.0000.0000.0000.000
14A22GLU-1-0.835-0.8917.6860.1450.1450.0000.0000.0000.000
15A23VAL0-0.004-0.0162.418-1.5640.5700.771-0.645-2.2600.003
16A24GLN0-0.0200.0055.174-0.391-0.264-0.001-0.009-0.1170.000
17A25LEU00.0360.0304.8041.0691.0690.0000.0000.0000.000
18A26ALA0-0.038-0.0287.253-0.914-0.9140.0000.0000.0000.000
19A27VAL00.0680.0359.6390.1920.1920.0000.0000.0000.000
20A28ASN0-0.078-0.02612.143-0.204-0.2040.0000.0000.0000.000
21A29ARG10.9980.98914.755-0.428-0.4280.0000.0000.0000.000
22A30VAL0-0.068-0.02818.267-0.052-0.0520.0000.0000.0000.000
23A31THR0-0.006-0.05315.369-0.010-0.0100.0000.0000.0000.000
24A32GLU-1-0.921-0.94714.5600.3710.3710.0000.0000.0000.000
25A33GLU-1-0.927-0.93011.6270.5820.5820.0000.0000.0000.000
26A34ALA00.0160.0097.7650.0180.0180.0000.0000.0000.000
27A35VAL0-0.062-0.0415.952-0.139-0.1390.0000.0000.0000.000
28A36ALA00.0360.0292.791-1.9520.0391.920-1.202-2.7090.011
29A37VAL0-0.045-0.0384.648-1.615-1.3280.000-0.028-0.2580.000
30A38LYS10.8930.9562.297-4.253-2.9250.922-0.601-1.6490.006
31A39ILE00.0000.0005.6650.0100.0100.0000.0000.0000.000
32A40VAL0-0.042-0.0176.516-0.204-0.2040.0000.0000.0000.000
33A41ASP-1-0.816-0.8899.1340.3230.3230.0000.0000.0000.000
34A42MET0-0.049-0.01610.6880.0500.0500.0000.0000.0000.000
35A43LYS10.8350.88512.061-0.652-0.6520.0000.0000.0000.000
36A44ARG10.8670.91414.058-0.234-0.2340.0000.0000.0000.000
37A45ALA0-0.010-0.01014.784-0.038-0.0380.0000.0000.0000.000
38A46VAL00.011-0.00616.917-0.047-0.0470.0000.0000.0000.000
39A47ASP-1-0.835-0.88920.2750.3400.3400.0000.0000.0000.000
40A48CYS00.0040.00418.150-0.011-0.0110.0000.0000.0000.000
41A49PRO0-0.034-0.00414.7610.0610.0610.0000.0000.0000.000
42A50GLU-1-0.826-0.91012.6500.7990.7990.0000.0000.0000.000
43A51ASN0-0.025-0.0078.4150.2910.2910.0000.0000.0000.000
44A52ILE00.0770.0375.9890.1140.1140.0000.0000.0000.000
45A53LYS10.8390.9028.164-0.616-0.6160.0000.0000.0000.000
46A54LYS10.9310.9699.164-0.982-0.9820.0000.0000.0000.000
47A55GLU-1-0.774-0.8762.5379.9498.2276.593-1.533-3.337-0.014
48A56ILE0-0.0040.0024.881-0.181-0.140-0.001-0.007-0.0340.000
49A57CYS0-0.088-0.0587.125-0.574-0.5740.0000.0000.0000.000
50A58ILE00.0290.0075.674-0.294-0.2940.0000.0000.0000.000
51A59ASN00.023-0.0031.915-8.608-5.4003.940-2.921-4.2280.011
52A60LYS10.8500.9385.187-1.210-1.116-0.001-0.002-0.0910.000
53A61MET0-0.078-0.0248.220-0.004-0.0040.0000.0000.0000.000
54A62LEU0-0.040-0.0023.182-0.1780.0990.020-0.047-0.2500.000
55A63ASN0-0.058-0.0466.903-0.209-0.2090.0000.0000.0000.000
56A64HIS00.0350.0237.9630.1780.1780.0000.0000.0000.000
57A65GLU-1-0.876-0.9298.326-0.941-0.9410.0000.0000.0000.000
58A66ASN0-0.034-0.0349.2470.1140.1140.0000.0000.0000.000
59A67VAL0-0.062-0.0273.6220.0520.2510.006-0.034-0.1710.000
60A68VAL0-0.0080.0142.104-3.177-1.6244.200-1.441-4.3110.004
61A69LYS10.9520.9792.799-5.306-3.3470.687-1.128-1.517-0.013
62A70PHE00.0230.0124.090-0.2550.1340.001-0.047-0.3420.000
63A71TYR0-0.038-0.0275.0760.1480.243-0.001-0.001-0.0920.000
64A72GLY0-0.009-0.0078.213-0.009-0.0090.0000.0000.0000.000
65A73HIS0-0.008-0.0039.0860.2060.2060.0000.0000.0000.000
66A74ARG10.9330.97211.267-0.882-0.8820.0000.0000.0000.000
67A75ARG10.8480.92413.148-0.606-0.6060.0000.0000.0000.000
68A76GLU-1-0.873-0.92415.2570.5570.5570.0000.0000.0000.000
69A77GLY00.0190.01117.706-0.020-0.0200.0000.0000.0000.000
70A78ASN00.002-0.02416.9740.0310.0310.0000.0000.0000.000
71A79ILE00.0610.05613.0430.0570.0570.0000.0000.0000.000
72A80GLN0-0.037-0.03310.0850.0470.0470.0000.0000.0000.000
73A81TYR00.0520.0309.7610.0630.0630.0000.0000.0000.000
74A82LEU0-0.022-0.0274.487-0.524-0.2180.000-0.028-0.2780.000
75A83PHE0-0.017-0.0047.2350.3580.3580.0000.0000.0000.000
76A84LEU00.018-0.0022.200-3.838-2.2536.889-1.785-6.6890.011
77A85GLU-1-0.758-0.8804.153-0.912-0.1150.000-0.337-0.460-0.001
78A86TYR00.0120.0181.773-18.251-18.24114.449-6.242-8.217-0.035
79A87CYS0-0.026-0.0082.007-11.033-13.59110.000-2.654-4.7870.030
80A88SER00.022-0.0142.478-7.132-4.7542.830-1.803-3.405-0.028
81A89GLY00.0080.0203.036-2.993-2.0430.422-0.513-0.858-0.006
82A90GLY00.0350.0172.537-1.8180.1352.397-1.709-2.6410.002
83A91GLU-1-0.870-0.9542.491-14.086-11.1121.241-0.775-3.441-0.024
84A92LEU0-0.008-0.0175.2310.0590.118-0.001-0.003-0.0560.000
85A93PHE0-0.036-0.0276.4700.2190.2190.0000.0000.0000.000
86A94ASP-1-0.859-0.9244.692-2.516-2.410-0.001-0.007-0.0980.000
87A95ARG10.7240.8506.7530.4860.4860.0000.0000.0000.000
88A96ILE0-0.086-0.02711.1490.1130.1130.0000.0000.0000.000
89A97GLU-1-0.899-0.95012.877-0.473-0.4730.0000.0000.0000.000
90A98PRO00.003-0.01013.7380.0360.0360.0000.0000.0000.000
91A99ASP-1-0.973-0.99016.454-0.373-0.3730.0000.0000.0000.000
92A100ILE0-0.076-0.03918.7760.0530.0530.0000.0000.0000.000
93A101GLY0-0.025-0.00717.1140.0270.0270.0000.0000.0000.000
94A102MET0-0.0110.00813.884-0.013-0.0130.0000.0000.0000.000
95A103PRO00.0100.00317.9440.0210.0210.0000.0000.0000.000
96A104GLU-1-0.795-0.90119.945-0.199-0.1990.0000.0000.0000.000
97A105PRO00.010-0.00521.463-0.005-0.0050.0000.0000.0000.000
98A106ASP-1-0.871-0.92516.140-0.234-0.2340.0000.0000.0000.000
99A107ALA00.0350.00617.175-0.008-0.0080.0000.0000.0000.000
100A108GLN0-0.091-0.06618.685-0.005-0.0050.0000.0000.0000.000
101A109ARG10.9020.96313.4130.1460.1460.0000.0000.0000.000
102A110PHE00.020-0.00712.007-0.010-0.0100.0000.0000.0000.000
103A111PHE00.0280.00215.120-0.022-0.0220.0000.0000.0000.000
104A112HIS0-0.068-0.05216.670-0.012-0.0120.0000.0000.0000.000
105A113GLN0-0.0010.01013.063-0.013-0.0130.0000.0000.0000.000
106A114LEU00.0350.02311.311-0.072-0.0720.0000.0000.0000.000
107A115MET0-0.037-0.02512.635-0.021-0.0210.0000.0000.0000.000
108A116ALA0-0.035-0.00613.8750.0040.0040.0000.0000.0000.000
109A117GLY00.0590.02910.073-0.039-0.0390.0000.0000.0000.000
110A118VAL00.010-0.00710.454-0.045-0.0450.0000.0000.0000.000
111A119VAL0-0.050-0.03012.2560.0530.0530.0000.0000.0000.000
112A120TYR00.0040.0218.006-0.001-0.0010.0000.0000.0000.000
113A121LEU00.0000.0016.5910.0600.0600.0000.0000.0000.000
114A122HIS0-0.029-0.03910.6510.0890.0890.0000.0000.0000.000
115A123GLY0-0.0060.00014.1950.0610.0610.0000.0000.0000.000
116A124ILE0-0.055-0.0199.2090.0500.0500.0000.0000.0000.000
117A125GLY0-0.045-0.01613.7030.0500.0500.0000.0000.0000.000
118A126ILE0-0.007-0.0168.1440.1250.1250.0000.0000.0000.000
119A127THR0-0.045-0.03911.590-0.057-0.0570.0000.0000.0000.000
120A128HIS00.026-0.0056.062-0.209-0.2090.0000.0000.0000.000
121A129ARG10.7910.8699.073-0.300-0.3000.0000.0000.0000.000
122A130ASP-1-0.807-0.8979.3410.0440.0440.0000.0000.0000.000
123A131ILE00.0110.01610.227-0.040-0.0400.0000.0000.0000.000
124A132LYS10.9080.93610.0000.7640.7640.0000.0000.0000.000
125A133PRO0-0.0020.0009.8810.0660.0660.0000.0000.0000.000
126A134GLU-1-0.809-0.9056.073-1.271-1.2710.0000.0000.0000.000
127A135ASN0-0.047-0.0155.591-0.984-0.9840.0000.0000.0000.000
128A136LEU0-0.095-0.0316.8560.5760.5760.0000.0000.0000.000
129A137LEU00.0470.0182.578-3.229-1.2665.017-1.083-5.8960.000
130A138LEU0-0.0180.0045.691-0.435-0.4350.0000.0000.0000.000
131A139ASP-1-0.797-0.8965.2350.5620.5620.0000.0000.0000.000
132A140GLU-1-0.888-0.9557.3770.2440.2440.0000.0000.0000.000
133A141ARG10.8530.9278.525-0.148-0.1480.0000.0000.0000.000
134A142ASP-1-0.777-0.8719.354-0.226-0.2260.0000.0000.0000.000
135A143ASN0-0.139-0.06810.360-0.130-0.1300.0000.0000.0000.000
136A144LEU00.0270.0179.6680.1590.1590.0000.0000.0000.000
137A145LYS10.8140.8996.0960.2300.2300.0000.0000.0000.000
138A146ILE0-0.019-0.0045.2950.3160.3160.0000.0000.0000.000
139A147SER0-0.018-0.0172.469-4.736-2.2690.968-1.042-2.3930.003
140A148ASP-1-0.829-0.9192.650-0.1732.0006.564-3.036-5.7010.008
141A149PHE0-0.028-0.0311.885-6.896-10.13512.368-1.494-7.6350.031
142A150GLY00.0230.0203.435-1.259-0.9300.0010.120-0.4500.001
143A151LEU0-0.023-0.0195.209-1.241-1.168-0.001-0.002-0.0690.000
144A152ALA00.0520.0636.517-0.543-0.5430.0000.0000.0000.000
145A153THR0-0.113-0.0828.1450.0840.0840.0000.0000.0000.000
146A154VAL00.0310.03911.110-0.100-0.1000.0000.0000.0000.000
147A155PHE0-0.014-0.00613.5750.0450.0450.0000.0000.0000.000
148A156ARG10.8930.96716.4590.0500.0500.0000.0000.0000.000
149A157TYR00.0340.00917.1590.0000.0000.0000.0000.0000.000
150A158ASN00.0000.00319.503-0.008-0.0080.0000.0000.0000.000
151A159ASN0-0.010-0.00921.333-0.009-0.0090.0000.0000.0000.000
152A160ARG10.9500.97822.523-0.050-0.0500.0000.0000.0000.000
153A161GLU-1-0.848-0.89820.7430.0290.0290.0000.0000.0000.000
154A162ARG10.8170.89815.625-0.262-0.2620.0000.0000.0000.000
155A163LEU00.0160.01820.0990.0040.0040.0000.0000.0000.000
156A164LEU0-0.064-0.03215.9120.0430.0430.0000.0000.0000.000
157A165ASN00.0440.00419.704-0.007-0.0070.0000.0000.0000.000
158A166LYS10.7990.88014.470-0.411-0.4110.0000.0000.0000.000
159A167MET00.0460.03918.0780.0050.0050.0000.0000.0000.000
160A168CYS0-0.023-0.00412.0740.0640.0640.0000.0000.0000.000
161A169GLY00.0890.06513.219-0.035-0.0350.0000.0000.0000.000
162A170THR0-0.006-0.01113.117-0.067-0.0670.0000.0000.0000.000
163A171LEU00.018-0.00215.808-0.004-0.0040.0000.0000.0000.000
164A172PRO00.0630.03716.8940.0350.0350.0000.0000.0000.000
165A173TYR00.0630.01412.9170.0380.0380.0000.0000.0000.000
166A174VAL0-0.081-0.02417.1540.0510.0510.0000.0000.0000.000
167A175ALA00.0550.02019.215-0.021-0.0210.0000.0000.0000.000
168A176PRO0-0.0040.00321.6360.0170.0170.0000.0000.0000.000
169A177GLU-1-0.784-0.89022.577-0.040-0.0400.0000.0000.0000.000
170A178LEU0-0.0310.00417.7890.0200.0200.0000.0000.0000.000
171A179LEU00.012-0.00122.2260.0150.0150.0000.0000.0000.000
172A180LYS10.8320.92724.9190.0850.0850.0000.0000.0000.000
173A181ARG10.8790.93925.9410.0250.0250.0000.0000.0000.000
174A182ARG10.8910.93325.345-0.057-0.0570.0000.0000.0000.000
175A183GLU-1-0.885-0.93823.8380.0980.0980.0000.0000.0000.000
176A184PHE00.0030.00218.422-0.020-0.0200.0000.0000.0000.000
177A185HIS0-0.017-0.03421.4340.0210.0210.0000.0000.0000.000
178A186ALA00.026-0.00316.0790.0000.0000.0000.0000.0000.000
179A187GLU-1-0.878-0.94016.980-0.077-0.0770.0000.0000.0000.000
180A188PRO00.001-0.01018.130-0.019-0.0190.0000.0000.0000.000
181A189VAL00.0210.02116.532-0.019-0.0190.0000.0000.0000.000
182A190ASP-1-0.700-0.81913.2700.0300.0300.0000.0000.0000.000
183A191VAL0-0.020-0.00315.654-0.042-0.0420.0000.0000.0000.000
184A192TRP00.0150.00118.278-0.013-0.0130.0000.0000.0000.000
185A193SER0-0.0100.00915.105-0.014-0.0140.0000.0000.0000.000
186A194CYS0-0.035-0.00914.746-0.060-0.0600.0000.0000.0000.000
187A195GLY00.0330.01916.539-0.023-0.0230.0000.0000.0000.000
188A196ILE0-0.029-0.00517.467-0.009-0.0090.0000.0000.0000.000
189A197VAL00.0380.00814.074-0.041-0.0410.0000.0000.0000.000
190A198LEU0-0.041-0.01216.320-0.022-0.0220.0000.0000.0000.000
191A199THR0-0.015-0.02519.0700.0120.0120.0000.0000.0000.000
192A200ALA00.0020.01115.0750.0040.0040.0000.0000.0000.000
193A201MET0-0.018-0.00614.693-0.008-0.0080.0000.0000.0000.000
194A202LEU0-0.018-0.01616.8050.0190.0190.0000.0000.0000.000
195A203ALA0-0.0140.00419.6160.0220.0220.0000.0000.0000.000
196A204GLY00.0580.03716.5800.0050.0050.0000.0000.0000.000
197A205GLU-1-0.853-0.91817.583-0.361-0.3610.0000.0000.0000.000
198A206LEU0-0.023-0.01715.0590.0290.0290.0000.0000.0000.000
199A207PRO0-0.008-0.00219.0380.0180.0180.0000.0000.0000.000
200A208TRP00.0430.00521.8730.0290.0290.0000.0000.0000.000
201A209ASP-1-0.848-0.91321.202-0.348-0.3480.0000.0000.0000.000
202A210GLN0-0.064-0.05821.342-0.010-0.0100.0000.0000.0000.000
203A211PRO0-0.0050.02923.2490.0060.0060.0000.0000.0000.000
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