FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: P37VL

Calculation Name: 4I6X-A-Xray34

Preferred Name:
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Target Type:
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Ligand Name:
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ligand 3-letter code:
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PDB ID: 4I6X

Chain ID: A

ChEMBL ID:
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UniProt ID: Q14554

Base Structure: X-ray

Registration Date: 2018-09-07

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 190
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1170381.153463
FMO2-HF: Nuclear repulsion 1118013.475182
FMO2-HF: Total energy -52367.67828
FMO2-MP2: Total energy -52517.855694


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:28:MET)


Summations of interaction energy for fragment #1(A:28:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-20.979-13.16627.127-12.298-22.639-0.087
Interaction energy analysis for fragmet #1(A:28:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.088 / q_NPA : -0.048
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A30ILE0-0.036-0.0033.026-2.6240.0710.162-1.313-1.544-0.007
4A31GLU-1-0.913-0.9625.0250.6970.873-0.001-0.006-0.1690.000
5A32ARG10.9060.9547.6190.3320.3320.0000.0000.0000.000
6A33ILE0-0.008-0.01111.1800.0950.0950.0000.0000.0000.000
7A34SER00.0420.01513.793-0.032-0.0320.0000.0000.0000.000
8A35ASP-1-0.827-0.90417.5260.0390.0390.0000.0000.0000.000
9A36PRO0-0.036-0.03118.3430.0190.0190.0000.0000.0000.000
10A37LYS10.9160.96119.901-0.031-0.0310.0000.0000.0000.000
11A38ASP-1-0.706-0.83915.2350.1130.1130.0000.0000.0000.000
12A39LEU00.0160.01614.1700.0480.0480.0000.0000.0000.000
13A40LYS10.8710.92916.243-0.060-0.0600.0000.0000.0000.000
14A41LYS10.9850.98915.859-0.229-0.2290.0000.0000.0000.000
15A42LEU00.0320.02310.0480.0350.0350.0000.0000.0000.000
16A43LEU0-0.017-0.01613.8610.0410.0410.0000.0000.0000.000
17A44ARG10.8930.95415.926-0.163-0.1630.0000.0000.0000.000
18A45THR0-0.071-0.02714.1770.0180.0180.0000.0000.0000.000
19A46ARG10.9200.9706.406-1.494-1.4940.0000.0000.0000.000
20A47ASN00.1250.06213.022-0.043-0.0430.0000.0000.0000.000
21A48ASN0-0.0190.01011.399-0.095-0.0950.0000.0000.0000.000
22A49VAL0-0.033-0.01110.6230.1490.1490.0000.0000.0000.000
23A50LEU0-0.0030.00410.167-0.100-0.1000.0000.0000.0000.000
24A51VAL0-0.006-0.00810.2880.0070.0070.0000.0000.0000.000
25A52LEU0-0.017-0.00611.484-0.003-0.0030.0000.0000.0000.000
26A53TYR00.0440.01713.0490.0040.0040.0000.0000.0000.000
27A54SER00.003-0.01115.546-0.001-0.0010.0000.0000.0000.000
28A55LYS10.9250.97817.4750.1330.1330.0000.0000.0000.000
29A56SER00.047-0.01419.1990.0130.0130.0000.0000.0000.000
30A57GLU-1-0.906-0.94215.167-0.299-0.2990.0000.0000.0000.000
31A58VAL00.0500.03216.150-0.038-0.0380.0000.0000.0000.000
32A59ALA0-0.073-0.02817.597-0.011-0.0110.0000.0000.0000.000
33A60ALA00.0210.00213.467-0.007-0.0070.0000.0000.0000.000
34A61GLU-1-0.892-0.92412.912-0.317-0.3170.0000.0000.0000.000
35A62ASN00.0210.00011.804-0.062-0.0620.0000.0000.0000.000
36A63HIS00.0340.02811.631-0.043-0.0430.0000.0000.0000.000
37A64LEU00.0360.0268.688-0.182-0.1820.0000.0000.0000.000
38A65ARG10.9721.0107.018-0.221-0.2210.0000.0000.0000.000
39A66LEU0-0.018-0.0016.9970.0210.0210.0000.0000.0000.000
40A67LEU00.0350.0006.883-0.157-0.1570.0000.0000.0000.000
41A68SER00.0520.0253.082-1.696-0.9350.063-0.272-0.5510.001
42A69THR0-0.033-0.0262.052-5.731-6.5835.587-2.324-2.410-0.027
43A70VAL00.0190.0004.581-0.387-0.267-0.001-0.007-0.1120.000
44A71ALA00.0330.0142.271-0.542-0.5783.218-1.038-2.1440.002
45A72GLN00.0530.0401.989-8.384-6.00810.276-4.933-7.719-0.036
46A73ALA00.0030.0132.8863.4801.725-0.0172.196-0.425-0.001
47A74VAL0-0.0010.0064.8000.3130.413-0.001-0.006-0.0930.000
48A75LYS10.9801.0092.0900.632-0.0854.060-0.603-2.7400.004
49A76GLY0-0.010-0.0033.802-0.240-0.1320.0100.022-0.1400.000
50A77GLN00.0410.0306.680-0.037-0.0370.0000.0000.0000.000
51A78GLY00.0100.0187.126-0.115-0.1150.0000.0000.0000.000
52A79THR0-0.015-0.0135.9050.8260.8260.0000.0000.0000.000
53A80ILE00.0070.0045.578-0.588-0.5880.0000.0000.0000.000
54A81CYS0-0.0410.0105.934-0.024-0.0240.0000.0000.0000.000
55A82TRP00.005-0.0178.3800.0330.0330.0000.0000.0000.000
56A83VAL00.0010.00311.1190.0590.0590.0000.0000.0000.000
57A84ASP-1-0.751-0.87714.690-0.211-0.2110.0000.0000.0000.000
58A94CYS0-0.041-0.03417.0030.0360.0360.0000.0000.0000.000
59A86GLY0-0.0020.00720.1530.0210.0210.0000.0000.0000.000
60A87ASP-1-0.844-0.90119.809-0.086-0.0860.0000.0000.0000.000
61A88ALA0-0.036-0.03621.7350.0080.0080.0000.0000.0000.000
62A89GLU-1-0.960-0.96922.202-0.036-0.0360.0000.0000.0000.000
63A90SER00.002-0.00218.9140.0080.0080.0000.0000.0000.000
64A91ARG10.9410.98620.9470.0750.0750.0000.0000.0000.000
65A92LYS10.9380.96123.7400.0200.0200.0000.0000.0000.000
66A93LEU00.0410.02917.1730.0120.0120.0000.0000.0000.000
67A95LYS10.9810.99221.5940.0250.0250.0000.0000.0000.000
68A96LYS10.8550.94122.884-0.028-0.0280.0000.0000.0000.000
69A97MET0-0.051-0.01018.8190.0140.0140.0000.0000.0000.000
70A98LYS10.9430.98322.1740.0160.0160.0000.0000.0000.000
71A99VAL00.0100.02419.948-0.003-0.0030.0000.0000.0000.000
72A100ASP-1-0.854-0.90722.802-0.066-0.0660.0000.0000.0000.000
73A101LEU0-0.036-0.02820.102-0.009-0.0090.0000.0000.0000.000
74A102SER0-0.078-0.06124.429-0.002-0.0020.0000.0000.0000.000
75A103PRO00.0030.01226.3890.0020.0020.0000.0000.0000.000
76A104LYS10.9690.96327.1040.0550.0550.0000.0000.0000.000
77A105ASP-1-0.892-0.93626.641-0.092-0.0920.0000.0000.0000.000
78A106LYS10.7820.89621.9120.1070.1070.0000.0000.0000.000
79A107LYS10.9290.96318.7390.2040.2040.0000.0000.0000.000
80A108VAL00.016-0.01116.029-0.008-0.0080.0000.0000.0000.000
81A109GLU-1-0.750-0.84117.755-0.087-0.0870.0000.0000.0000.000
82A110LEU0-0.037-0.01712.078-0.027-0.0270.0000.0000.0000.000
83A111PHE0-0.0160.00815.5310.0210.0210.0000.0000.0000.000
84A112HIS00.0210.00913.948-0.024-0.0240.0000.0000.0000.000
85A113TYR00.0220.01215.075-0.004-0.0040.0000.0000.0000.000
86A114GLN00.027-0.00415.3710.0370.0370.0000.0000.0000.000
87A115ASP-1-0.880-0.94917.1600.1090.1090.0000.0000.0000.000
88A116GLY0-0.0070.00717.539-0.010-0.0100.0000.0000.0000.000
89A117ALA0-0.049-0.01718.844-0.011-0.0110.0000.0000.0000.000
90A118PHE00.0030.00019.7600.0050.0050.0000.0000.0000.000
91A119HIS00.0330.06419.4970.0060.0060.0000.0000.0000.000
92A120THR00.004-0.00719.585-0.005-0.0050.0000.0000.0000.000
93A121GLU-1-0.776-0.85319.297-0.122-0.1220.0000.0000.0000.000
94A122TYR0-0.083-0.07016.151-0.001-0.0010.0000.0000.0000.000
95A123ASN00.0180.05918.342-0.016-0.0160.0000.0000.0000.000
96A124ARG10.9510.97318.5760.1360.1360.0000.0000.0000.000
97A125ALA00.0220.01018.732-0.011-0.0110.0000.0000.0000.000
98A126VAL00.0310.02014.092-0.030-0.0300.0000.0000.0000.000
99A127THR00.0150.01414.073-0.005-0.0050.0000.0000.0000.000
100A128PHE00.0660.0287.7760.0370.0370.0000.0000.0000.000
101A129LYS11.0020.99111.7150.1630.1630.0000.0000.0000.000
102A130SER0-0.0120.00814.5040.0300.0300.0000.0000.0000.000
103A131ILE00.0610.03710.8740.0290.0290.0000.0000.0000.000
104A132VAL0-0.012-0.0028.9790.0340.0340.0000.0000.0000.000
105A133ALA0-0.005-0.00811.3480.0590.0590.0000.0000.0000.000
106A134PHE00.0030.00514.0660.0370.0370.0000.0000.0000.000
107A135LEU0-0.012-0.0049.0450.0390.0390.0000.0000.0000.000
108A136LYS10.8470.93410.3100.3480.3480.0000.0000.0000.000
109A137ASP-1-0.836-0.89813.641-0.051-0.0510.0000.0000.0000.000
110A138PRO00.0180.02817.3250.0160.0160.0000.0000.0000.000
111A139LYS10.7860.87715.8280.0170.0170.0000.0000.0000.000
112A140GLY00.0180.01421.4520.0110.0110.0000.0000.0000.000
113A141PRO00.0060.00424.285-0.003-0.0030.0000.0000.0000.000
114A142PRO00.0080.00127.453-0.005-0.0050.0000.0000.0000.000
115A143LEU00.0200.00929.5800.0020.0020.0000.0000.0000.000
116A144TRP0-0.0010.00931.8160.0020.0020.0000.0000.0000.000
117A0NME00.0270.01833.8300.0020.0020.0000.0000.0000.000
118A201HOH0-0.022-0.01315.152-0.020-0.0200.0000.0000.0000.000
119A202HOH0-0.014-0.01219.7660.0030.0030.0000.0000.0000.000
120A203HOH0-0.033-0.0195.8640.0730.0730.0000.0000.0000.000
121A204HOH0-0.013-0.01915.924-0.018-0.0180.0000.0000.0000.000
122A205HOH00.0390.02319.797-0.008-0.0080.0000.0000.0000.000
123A206HOH0-0.005-0.01018.991-0.010-0.0100.0000.0000.0000.000
124A207HOH0-0.021-0.03519.9330.0060.0060.0000.0000.0000.000
125A208HOH0-0.023-0.01416.576-0.006-0.0060.0000.0000.0000.000
126A209HOH00.0260.01522.1190.0020.0020.0000.0000.0000.000
127A210HOH0-0.024-0.0213.0611.7012.2020.500-0.348-0.653-0.003
128A211HOH0-0.030-0.01914.698-0.004-0.0040.0000.0000.0000.000
129A212HOH0-0.040-0.04815.3820.0020.0020.0000.0000.0000.000
130A214HOH00.0170.01413.226-0.016-0.0160.0000.0000.0000.000
131A215HOH00.0070.01017.0830.0120.0120.0000.0000.0000.000
132A216HOH0-0.008-0.00120.0990.0000.0000.0000.0000.0000.000
133A217HOH0-0.005-0.02014.834-0.008-0.0080.0000.0000.0000.000
134A219HOH0-0.028-0.02423.6330.0040.0040.0000.0000.0000.000
135A220HOH00.0350.01216.243-0.010-0.0100.0000.0000.0000.000
136A221HOH0-0.037-0.02512.1020.0240.0240.0000.0000.0000.000
137A222HOH00.0220.0145.579-0.184-0.1840.0000.0000.0000.000
138A223HOH0-0.007-0.0058.6610.1110.1110.0000.0000.0000.000
139A228HOH0-0.042-0.05823.7490.0020.0020.0000.0000.0000.000
140A229HOH00.0410.0219.752-0.043-0.0430.0000.0000.0000.000
141A230HOH0-0.048-0.02921.8160.0010.0010.0000.0000.0000.000
142A231HOH00.0010.00324.905-0.004-0.0040.0000.0000.0000.000
143A233HOH0-0.032-0.02517.197-0.010-0.0100.0000.0000.0000.000
144A234HOH00.0340.04122.951-0.007-0.0070.0000.0000.0000.000
145A235HOH0-0.018-0.00719.715-0.004-0.0040.0000.0000.0000.000
146A236HOH00.0080.01115.179-0.016-0.0160.0000.0000.0000.000
147A239HOH00.0550.03324.6660.0020.0020.0000.0000.0000.000
148A240HOH0-0.023-0.00721.282-0.002-0.0020.0000.0000.0000.000
149A241HOH00.0240.01319.250-0.003-0.0030.0000.0000.0000.000
150A247HOH00.001-0.00521.4150.0030.0030.0000.0000.0000.000
151A250HOH0-0.048-0.04311.8080.0200.0200.0000.0000.0000.000
152A252HOH0-0.051-0.03720.542-0.001-0.0010.0000.0000.0000.000
153A253HOH0-0.008-0.00524.349-0.002-0.0020.0000.0000.0000.000
154A254HOH0-0.0040.00329.4810.0000.0000.0000.0000.0000.000
155A255HOH0-0.026-0.01823.3030.0040.0040.0000.0000.0000.000
156A256HOH0-0.035-0.03421.3020.0020.0020.0000.0000.0000.000
157A258HOH0-0.045-0.0335.1050.1110.1110.0000.0000.0000.000
158A259HOH0-0.016-0.0108.5940.0590.0590.0000.0000.0000.000
159A263HOH0-0.002-0.00511.820-0.021-0.0210.0000.0000.0000.000
160A264HOH0-0.011-0.00814.871-0.006-0.0060.0000.0000.0000.000
161A265HOH00.0390.02423.9950.0010.0010.0000.0000.0000.000
162A266HOH00.0030.00321.666-0.002-0.0020.0000.0000.0000.000
163A270HOH0-0.033-0.02714.879-0.003-0.0030.0000.0000.0000.000
164A271HOH0-0.031-0.01910.9560.0080.0080.0000.0000.0000.000
165A272HOH0-0.038-0.02526.187-0.001-0.0010.0000.0000.0000.000
166A273HOH0-0.038-0.02635.9820.0000.0000.0000.0000.0000.000
167A274HOH0-0.036-0.0233.520-0.2030.3000.023-0.241-0.284-0.001
168A275HOH0-0.050-0.02717.1370.0090.0090.0000.0000.0000.000
169A276HOH0-0.017-0.02820.252-0.002-0.0020.0000.0000.0000.000
170A277HOH0-0.021-0.01920.3750.0000.0000.0000.0000.0000.000
171A279HOH0-0.043-0.02624.5200.0000.0000.0000.0000.0000.000
172A282HOH00.0120.00424.972-0.004-0.0040.0000.0000.0000.000
173A283HOH0-0.007-0.02114.130-0.031-0.0310.0000.0000.0000.000
174A285HOH00.000-0.00217.593-0.016-0.0160.0000.0000.0000.000
175A287HOH0-0.029-0.02123.8510.0000.0000.0000.0000.0000.000
176A288HOH00.0070.00222.222-0.004-0.0040.0000.0000.0000.000
177A289HOH0-0.009-0.01423.1660.0030.0030.0000.0000.0000.000
178A290HOH0-0.039-0.02517.9310.0110.0110.0000.0000.0000.000
179A295HOH0-0.017-0.0172.480-1.6390.2081.080-1.441-1.486-0.009
180A307HOH00.0380.02312.0370.0020.0020.0000.0000.0000.000
181A309HOH00.0360.0407.7790.0700.0700.0000.0000.0000.000
182A311HOH00.006-0.0014.481-0.480-0.4400.000-0.006-0.0330.000
183A312HOH0-0.012-0.0113.303-2.802-2.2960.676-0.550-0.6320.001
184A313HOH00.0270.0302.698-1.1900.1801.492-1.392-1.471-0.011
185A314HOH0-0.022-0.0374.389-0.394-0.3240.000-0.036-0.0330.000
186A317HOH00.008-0.00319.325-0.010-0.0100.0000.0000.0000.000
187A318HOH00.0390.03013.126-0.006-0.0060.0000.0000.0000.000
188A321HOH0-0.040-0.0289.5100.0370.0370.0000.0000.0000.000
189A323HOH0-0.057-0.08518.533-0.007-0.0070.0000.0000.0000.000
190A324HOH0-0.015-0.06020.420-0.006-0.0060.0000.0000.0000.000