FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: P47NX

Calculation Name: 3OCG-A-Xray12

Preferred Name: MAP kinase p38 alpha

Target Type: SINGLE PROTEIN

Ligand Name: 5-amino-n-[5-(isoxazol-3-ylcarbamoyl)-2-methylphenyl]-1-phenyl-1h-pyrazole-4-carboxamide

ligand 3-letter code: OCG

PDB ID: 3OCG

Chain ID: A

ChEMBL ID: CHEMBL260

UniProt ID: Q16539

Base Structure: X-ray

Registration Date: 2017-08-22

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 347
LigandResidueName OCG
LigandFragmentNumber 347
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5799185.088822
FMO2-HF: Nuclear repulsion 5658873.185
FMO2-HF: Total energy -140311.903822
FMO2-MP2: Total energy -140721.633144


3D Structure
Snapshot
 
Ligand structure

OCG

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-94.283-63.51193.201-36.097-87.8750.006


Interactive mode: IFIE and PIEDA for fragment #347(A:361:OCG)


Summations of interaction energy for fragment #347(A:361:OCG)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-94.283-63.51193.201-36.097-87.875-0.006
Interaction energy analysis for fragmet #347(A:361:OCG)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.005 / q_NPA : -0.026
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A6PRO10.8440.90715.6010.4350.4350.0000.0000.0000.000
2A7THR00.0840.04818.5380.0080.0080.0000.0000.0000.000
3A8PHE00.0330.01712.890-0.037-0.0370.0000.0000.0000.000
4A9TYR0-0.017-0.01314.1050.0710.0710.0000.0000.0000.000
5A10ARG10.9590.97415.7650.2500.2500.0000.0000.0000.000
6A11GLN00.0220.00614.337-0.019-0.0190.0000.0000.0000.000
7A12GLU-1-0.948-0.97816.103-0.206-0.2060.0000.0000.0000.000
8A13LEU0-0.0050.00611.448-0.005-0.0050.0000.0000.0000.000
9A14ASN0-0.019-0.01211.1010.0140.0140.0000.0000.0000.000
10A15LYS10.9530.96515.2530.0540.0540.0000.0000.0000.000
11A16THR0-0.036-0.02313.062-0.012-0.0120.0000.0000.0000.000
12A17ILE00.0920.05415.431-0.007-0.0070.0000.0000.0000.000
13A18TRP0-0.0210.0076.443-0.090-0.0900.0000.0000.0000.000
14A19GLU-1-0.924-0.97612.572-0.360-0.3600.0000.0000.0000.000
15A20VAL00.0160.0149.336-0.096-0.0960.0000.0000.0000.000
16A21PRO0-0.029-0.01011.2280.1030.1030.0000.0000.0000.000
17A22GLU-1-0.875-0.94813.844-0.409-0.4090.0000.0000.0000.000
18A23ARG10.8170.90712.4980.8330.8330.0000.0000.0000.000
19A24TYR0-0.053-0.0489.371-0.052-0.0520.0000.0000.0000.000
20A25GLN00.0170.01212.2660.0740.0740.0000.0000.0000.000
21A26ASN0-0.021-0.02912.997-0.056-0.0560.0000.0000.0000.000
22A27LEU00.0070.0149.622-0.036-0.0360.0000.0000.0000.000
23A28SER0-0.001-0.0049.3990.0030.0030.0000.0000.0000.000
24A29PRO0-0.028-0.0167.9580.0720.0720.0000.0000.0000.000
25A30VAL0-0.0010.0282.949-2.152-0.5180.412-0.614-1.4330.006
26A31GLY00.0280.0046.137-0.692-0.6920.0000.0000.0000.000
27A32SER0-0.082-0.0626.8650.6320.6320.0000.0000.0000.000
28A33GLY00.0400.0177.6570.0330.0330.0000.0000.0000.000
29A34ALA0-0.051-0.01510.078-0.218-0.2180.0000.0000.0000.000
30A35TYR0-0.039-0.0356.581-0.264-0.2640.0000.0000.0000.000
31A36GLY00.0310.0017.079-0.604-0.6040.0000.0000.0000.000
32A37SER0-0.073-0.0226.7091.1641.1640.0000.0000.0000.000
33A38VAL00.0550.0242.848-4.660-1.4440.507-1.168-2.5540.013
34A39CYS0-0.081-0.0234.976-0.598-0.378-0.001-0.012-0.2070.000
35A40ALA00.0550.0384.806-0.303-0.3030.0000.0000.0000.000
36A41ALA0-0.012-0.0136.254-0.040-0.0400.0000.0000.0000.000
37A42PHE0-0.0020.0109.254-0.011-0.0110.0000.0000.0000.000
38A43ASP-1-0.759-0.86610.517-0.845-0.8450.0000.0000.0000.000
39A44THR0-0.014-0.02812.2460.1100.1100.0000.0000.0000.000
40A45LYS10.8750.94214.9710.4060.4060.0000.0000.0000.000
41A46THR0-0.024-0.03212.3410.0740.0740.0000.0000.0000.000
42A47GLY00.0130.02915.2920.0590.0590.0000.0000.0000.000
43A48LEU00.0260.01610.3460.0360.0360.0000.0000.0000.000
44A49ARG10.9500.9797.4990.5020.5020.0000.0000.0000.000
45A50VAL00.003-0.0065.8700.1850.1850.0000.0000.0000.000
46A51ALA00.0090.0082.464-0.1231.4322.339-1.288-2.6060.007
47A52VAL0-0.011-0.0122.814-4.575-2.9690.655-0.777-1.484-0.009
48A53LYS10.8430.9032.3850.0783.3986.692-3.055-6.9570.027
49A54LYS10.8820.9543.516-0.731-0.6800.0160.174-0.2410.001
50A55LEU0-0.001-0.0035.2010.5610.5610.0000.0000.0000.000
51A56SER0-0.026-0.0217.9280.1790.1790.0000.0000.0000.000
52A57ARG10.9220.95311.3040.0740.0740.0000.0000.0000.000
53A58PRO00.0510.04610.7470.0620.0620.0000.0000.0000.000
54A59PHE00.0590.01512.0200.0180.0180.0000.0000.0000.000
55A60GLN00.008-0.00315.0800.0740.0740.0000.0000.0000.000
56A61SER00.0110.00814.8020.0420.0420.0000.0000.0000.000
57A62ILE00.0860.03415.154-0.049-0.0490.0000.0000.0000.000
58A63ILE00.0120.00412.037-0.026-0.0260.0000.0000.0000.000
59A64HIS0-0.082-0.04910.5930.0050.0050.0000.0000.0000.000
60A65ALA00.0390.04210.241-0.174-0.1740.0000.0000.0000.000
61A66LYS10.9060.96010.810-0.149-0.1490.0000.0000.0000.000
62A67ARG10.7850.8826.0350.0380.0380.0000.0000.0000.000
63A68THR0-0.002-0.0216.187-0.492-0.4920.0000.0000.0000.000
64A69TYR0-0.0100.0077.482-0.170-0.1700.0000.0000.0000.000
65A70ARG10.7950.8644.4800.2480.370-0.001-0.007-0.1140.000
66A71GLU-1-0.779-0.8661.832-26.418-31.92820.344-6.004-8.830-0.055
67A72LEU0-0.0030.0024.2520.8881.0640.0000.008-0.1840.000
68A73ARG10.8930.9537.258-0.059-0.0590.0000.0000.0000.000
69A74LEU0-0.024-0.0102.171-1.065-0.1181.165-0.515-1.5960.001
70A75LEU0-0.034-0.0192.243-2.9180.0212.732-1.085-4.5870.005
71A76LYS10.7640.8745.680-0.333-0.318-0.001-0.001-0.0130.000
72A77HIS0-0.043-0.0108.548-0.228-0.2280.0000.0000.0000.000
73A78MET0-0.0500.0076.357-0.549-0.5490.0000.0000.0000.000
74A79LYS10.9150.9458.879-1.179-1.1790.0000.0000.0000.000
75A80HIS00.0630.03910.943-0.007-0.0070.0000.0000.0000.000
76A81GLU-1-0.830-0.90411.3231.2431.2430.0000.0000.0000.000
77A82ASN00.0070.00111.529-0.101-0.1010.0000.0000.0000.000
78A83VAL0-0.019-0.0096.3450.6140.6140.0000.0000.0000.000
79A84ILE0-0.074-0.0142.422-5.131-2.5312.179-1.211-3.5670.013
80A85GLY00.0620.0265.8651.2121.2120.0000.0000.0000.000
81A86LEU0-0.080-0.0404.921-1.548-1.5480.0000.0000.0000.000
82A87LEU0-0.025-0.0136.5150.2810.2810.0000.0000.0000.000
83A88ASP-1-0.827-0.9027.211-0.745-0.7450.0000.0000.0000.000
84A89VAL00.0010.0076.826-0.671-0.6710.0000.0000.0000.000
85A90PHE0-0.0170.0027.9250.3370.3370.0000.0000.0000.000
86A91THR0-0.001-0.04010.119-0.103-0.1030.0000.0000.0000.000
87A92PRO0-0.0020.00912.9560.0330.0330.0000.0000.0000.000
88A93ALA0-0.0230.01315.7030.0560.0560.0000.0000.0000.000
89A94ARG10.9070.91817.9660.2530.2530.0000.0000.0000.000
90A95SER0-0.020-0.00220.6500.0290.0290.0000.0000.0000.000
91A96LEU00.0600.02119.242-0.033-0.0330.0000.0000.0000.000
92A97GLU-1-0.941-0.97120.581-0.158-0.1580.0000.0000.0000.000
93A98GLU-1-0.898-0.93120.191-0.281-0.2810.0000.0000.0000.000
94A99PHE0-0.062-0.01612.777-0.036-0.0360.0000.0000.0000.000
95A100ASN0-0.019-0.03616.0860.0300.0300.0000.0000.0000.000
96A101ASP-1-0.930-0.94812.229-0.493-0.4930.0000.0000.0000.000
97A102VAL00.0160.0017.3250.0330.0330.0000.0000.0000.000
98A103TYR00.0190.0136.4830.0820.0820.0000.0000.0000.000
99A104LEU00.0160.0082.163-1.394-0.2441.573-0.593-2.131-0.001
100A105VAL00.0090.0102.588-3.751-2.0310.924-0.987-1.657-0.014
101A106THR00.0730.0412.088-12.112-9.1098.444-3.443-8.005-0.029
102A107HIS00.0660.0273.819-0.3020.272-0.001-0.022-0.5500.000
103A108LEU0-0.071-0.0372.117-10.377-7.3184.471-2.506-5.024-0.011
104A109MET0-0.025-0.0032.038-10.518-11.37310.863-3.345-6.6630.034
105A110GLY00.0000.0013.241-3.508-1.8451.292-0.800-2.155-0.006
106A111ALA0-0.005-0.0012.321-4.470-3.0851.566-1.090-1.861-0.002
107A112ASP-1-0.870-0.9302.243-5.453-4.5731.5160.096-2.491-0.008
108A113LEU00.044-0.0053.3641.0131.0950.0330.097-0.2120.000
109A114ASN0-0.044-0.0106.2750.7240.7240.0000.0000.0000.000
110A115ASN0-0.079-0.0365.3610.5870.5870.0000.0000.0000.000
111A116ILE00.0810.0397.2560.4340.4340.0000.0000.0000.000
112A117VAL0-0.0040.0059.6240.1900.1900.0000.0000.0000.000
113A118LYS10.8960.96510.9901.0221.0220.0000.0000.0000.000
114A119CYS0-0.101-0.05010.3370.1560.1560.0000.0000.0000.000
115A120GLN00.0410.02013.084-0.015-0.0150.0000.0000.0000.000
116A121LYS10.9270.96415.2020.2670.2670.0000.0000.0000.000
117A122LEU00.0130.01412.8990.0160.0160.0000.0000.0000.000
118A123THR00.0260.01417.1620.0390.0390.0000.0000.0000.000
119A124ASP-1-0.754-0.88619.1170.1650.1650.0000.0000.0000.000
120A125ASP-1-0.848-0.90720.2680.1660.1660.0000.0000.0000.000
121A126HIS00.0250.02512.5070.0570.0570.0000.0000.0000.000
122A127VAL00.002-0.01516.0130.0450.0450.0000.0000.0000.000
123A128GLN0-0.050-0.02616.9420.1080.1080.0000.0000.0000.000
124A129PHE00.1070.05715.0680.1000.1000.0000.0000.0000.000
125A130LEU0-0.023-0.00110.7470.1260.1260.0000.0000.0000.000
126A131ILE0-0.022-0.03514.0610.2080.2080.0000.0000.0000.000
127A132TYR0-0.025-0.01416.2850.1910.1910.0000.0000.0000.000
128A133GLN00.0520.02013.2820.2530.2530.0000.0000.0000.000
129A134ILE0-0.036-0.01711.6970.3280.3280.0000.0000.0000.000
130A135LEU0-0.031-0.02313.7090.3070.3070.0000.0000.0000.000
131A136ARG10.8250.91315.842-0.926-0.9260.0000.0000.0000.000
132A137GLY00.0210.00911.8930.0590.0590.0000.0000.0000.000
133A138LEU0-0.029-0.02810.3350.3100.3100.0000.0000.0000.000
134A139LYS10.8720.94712.342-0.988-0.9880.0000.0000.0000.000
135A140TYR00.0690.0539.9040.0470.0470.0000.0000.0000.000
136A141ILE0-0.016-0.0257.0460.0090.0090.0000.0000.0000.000
137A142HIS0-0.099-0.07510.081-0.371-0.3710.0000.0000.0000.000
138A143SER0-0.044-0.00612.894-0.240-0.2400.0000.0000.0000.000
139A144ALA00.0020.00310.678-0.160-0.1600.0000.0000.0000.000
140A145ASP-1-0.988-0.98612.3920.8590.8590.0000.0000.0000.000
141A146ILE0-0.033-0.0056.422-0.019-0.0190.0000.0000.0000.000
142A147ILE0-0.046-0.0359.2050.0550.0550.0000.0000.0000.000
143A148HIS00.0010.0096.810-0.701-0.7010.0000.0000.0000.000
144A149ARG10.8740.9257.471-1.077-1.0770.0000.0000.0000.000
145A150ASP-1-0.886-0.9509.0031.0431.0430.0000.0000.0000.000
146A151LEU00.0250.0429.7770.2120.2120.0000.0000.0000.000
147A152LYS10.8280.9129.719-1.534-1.5340.0000.0000.0000.000
148A153PRO00.0410.0158.7300.2170.2170.0000.0000.0000.000
149A154SER00.0210.0055.579-0.416-0.4160.0000.0000.0000.000
150A155ASN0-0.066-0.0345.045-1.357-1.128-0.001-0.008-0.2200.000
151A156LEU00.0040.0236.2522.0522.0520.0000.0000.0000.000
152A157ALA00.022-0.0012.661-2.599-1.7540.423-0.302-0.9660.000
153A158VAL00.0320.0084.6131.0491.217-0.001-0.013-0.1550.000
154A159ASN0-0.008-0.0096.1950.2230.2230.0000.0000.0000.000
155A160GLU-1-0.934-1.0077.441-1.416-1.4160.0000.0000.0000.000
156A161ASP-1-0.870-0.93710.546-0.029-0.0290.0000.0000.0000.000
157A162CYS0-0.113-0.03911.337-0.165-0.1650.0000.0000.0000.000
158A163GLU-1-0.920-0.92411.8380.9400.9400.0000.0000.0000.000
159A164LEU0-0.028-0.0228.6000.0560.0560.0000.0000.0000.000
160A165LYS10.8520.9076.407-1.542-1.5420.0000.0000.0000.000
161A166ILE0-0.028-0.0026.539-0.323-0.3230.0000.0000.0000.000
162A167LEU0-0.034-0.0332.551-4.0840.0103.080-1.584-5.5900.012
163A168ASP-1-0.843-0.9202.32721.96518.81314.602-2.792-8.6590.000
164A169PHE00.033-0.0043.056-7.805-4.6840.582-0.520-3.1830.003
165A170GLY00.0950.0543.198-3.594-2.5160.053-0.317-0.8130.000
166A171LEU0-0.020-0.0233.600-2.853-2.1310.010-0.319-0.413-0.002
167A172ALA00.0330.0272.1801.591-0.8186.732-1.969-2.3540.009
168A173ARG10.7360.8534.077-4.387-3.8630.002-0.125-0.4000.000
169A174HIS00.0550.0135.977-0.291-0.2910.0000.0000.0000.000
170A175THR0-0.002-0.0068.296-0.211-0.2110.0000.0000.0000.000
171A176ASP-1-0.780-0.8818.7620.9320.9320.0000.0000.0000.000
172A177ASP-1-0.788-0.8869.7581.3471.3470.0000.0000.0000.000
173A178GLU-1-0.768-0.86212.5370.6200.6200.0000.0000.0000.000
174A179MET0-0.071-0.02213.768-0.107-0.1070.0000.0000.0000.000
175A180THR0-0.041-0.02713.941-0.099-0.0990.0000.0000.0000.000
176A181GLY00.0120.00114.570-0.025-0.0250.0000.0000.0000.000
177A182TYR00.0130.0248.103-0.029-0.0290.0000.0000.0000.000
178A183VAL00.0340.00413.2460.0350.0350.0000.0000.0000.000
179A184ALA00.0440.04013.9240.0330.0330.0000.0000.0000.000
180A185THR0-0.043-0.00313.1010.0070.0070.0000.0000.0000.000
181A186ARG10.8170.85815.547-0.221-0.2210.0000.0000.0000.000
182A187TRP0-0.076-0.04615.2720.0210.0210.0000.0000.0000.000
183A188TYR0-0.012-0.03013.556-0.026-0.0260.0000.0000.0000.000
184A189ARG10.8190.90312.306-0.768-0.7680.0000.0000.0000.000
185A190ALA00.0460.02217.174-0.078-0.0780.0000.0000.0000.000
186A191PRO0-0.0020.00219.173-0.026-0.0260.0000.0000.0000.000
187A192GLU-1-0.726-0.87819.7540.5600.5600.0000.0000.0000.000
188A193ILE0-0.052-0.03114.715-0.021-0.0210.0000.0000.0000.000
189A194MET0-0.063-0.00418.6500.0000.0000.0000.0000.0000.000
190A195LEU0-0.060-0.03520.955-0.038-0.0380.0000.0000.0000.000
191A196ASN0-0.031-0.03121.572-0.005-0.0050.0000.0000.0000.000
192A197TRP00.0280.01018.682-0.019-0.0190.0000.0000.0000.000
193A198MET0-0.0040.05320.630-0.016-0.0160.0000.0000.0000.000
194A199HIS0-0.046-0.03321.803-0.008-0.0080.0000.0000.0000.000
195A200TYR00.000-0.01313.059-0.034-0.0340.0000.0000.0000.000
196A201ASN00.0520.04617.7370.0500.0500.0000.0000.0000.000
197A202GLN00.0920.01913.748-0.016-0.0160.0000.0000.0000.000
198A203THR0-0.047-0.03915.1620.1190.1190.0000.0000.0000.000
199A204VAL0-0.027-0.01213.671-0.065-0.0650.0000.0000.0000.000
200A205ASP-1-0.676-0.81911.3562.0942.0940.0000.0000.0000.000
201A206ILE0-0.028-0.00914.258-0.016-0.0160.0000.0000.0000.000
202A207TRP00.0230.02117.612-0.109-0.1090.0000.0000.0000.000
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