FMODB ID: P4KZN
Calculation Name: 1L2Y-A-MD50-68700ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-09
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -23141.540585 |
---|---|
FMO2-HF: Nuclear repulsion | 18539.338746 |
FMO2-HF: Total energy | -4602.201839 |
FMO2-MP2: Total energy | -4615.622053 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-73.285 | -67.189 | 17.056 | -9.778 | -13.376 | -0.079 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.024 | 0.013 | 2.446 | -7.077 | -1.492 | 2.185 | -3.218 | -4.553 | -0.017 | |
4 | 4 | GLN | 0 | 0.044 | 0.025 | 1.761 | -13.712 | -19.506 | 13.393 | -4.088 | -3.512 | -0.047 | |
5 | 5 | GLN | 0 | 0.012 | -0.001 | 3.044 | -0.519 | 0.855 | 0.287 | -0.502 | -1.159 | -0.001 | |
6 | 6 | GLN | 0 | -0.029 | -0.007 | 2.509 | -19.765 | -14.916 | 1.176 | -2.023 | -4.002 | -0.014 | |
7 | 7 | GLN | 0 | -0.016 | -0.003 | 3.510 | 3.745 | 3.827 | 0.015 | 0.053 | -0.150 | 0.000 | |
8 | 8 | GLN | 0 | -0.006 | -0.044 | 6.060 | 1.554 | 1.554 | 0.000 | 0.000 | 0.000 | 0.000 | |
9 | 9 | GLN | 0 | -0.036 | -0.047 | 9.426 | -0.896 | -0.896 | 0.000 | 0.000 | 0.000 | 0.000 | |
10 | 10 | GLN | -1 | -0.890 | -0.867 | 5.743 | -36.615 | -36.615 | 0.000 | 0.000 | 0.000 | 0.000 |