FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: P4L1N

Calculation Name: 3OQK-A-Xray37

Preferred Name: Renin

Target Type: SINGLE PROTEIN

Ligand Name: 2-phenoxy-1-phenyl-3-(piperazin-1-ylcarbonyl)-1h-indole

ligand 3-letter code: S52

PDB ID: 3OQK

Chain ID: A

ChEMBL ID: CHEMBL286

UniProt ID: P00797

Base Structure: X-ray

Registration Date: 2019-02-14

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20171228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 331
LigandResidueName S52
LigandFragmentNumber 331
LigandCharge S52=1
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5233179.534744
FMO2-HF: Nuclear repulsion 5102614.086603
FMO2-HF: Total energy -130565.448142
FMO2-MP2: Total energy -130943.734949


3D Structure
Snapshot
 
Ligand structure

S52

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-335.820-300.91587.234-40.858-81.2810.204


Interactive mode: IFIE and PIEDA for fragment #331(A:327:S52)


Summations of interaction energy for fragment #331(A:327:S52)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-335.82-300.91587.234-40.858-81.281-0.204
Interaction energy analysis for fragmet #331(A:327:S52)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.794 / q_NPA : 0.922
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A2SER10.7720.87919.84414.75814.7580.0000.0000.0000.000
2A3SER00.0650.03318.088-0.418-0.4180.0000.0000.0000.000
3A4VAL00.0040.01413.2030.5630.5630.0000.0000.0000.000
4A5ILE00.0090.00015.452-0.592-0.5920.0000.0000.0000.000
5A6LEU0-0.047-0.02110.780-0.755-0.7550.0000.0000.0000.000
6A7THR0-0.0020.00311.0291.6831.6830.0000.0000.0000.000
7A8ASN0-0.048-0.0319.846-3.142-3.1420.0000.0000.0000.000
8A9TYR00.0630.0295.1952.1172.1170.0000.0000.0000.000
9A10MET00.002-0.0166.781-1.740-1.7400.0000.0000.0000.000
10A11ASP-1-0.787-0.8808.496-19.984-19.9840.0000.0000.0000.000
11A12THR0-0.126-0.0633.955-2.534-2.2610.000-0.031-0.2420.000
12A13GLN0-0.0130.0042.314-6.988-5.5273.505-1.234-3.732-0.008
13A14TYR00.0340.0324.9492.7932.928-0.001-0.011-0.1240.000
14A15TYR0-0.049-0.0507.202-3.287-3.2870.0000.0000.0000.000
15A16GLY00.0520.0249.6472.0072.0070.0000.0000.0000.000
16A17GLU-1-0.980-0.97911.803-16.922-16.9220.0000.0000.0000.000
17A18ILE0-0.050-0.01911.3830.0740.0740.0000.0000.0000.000
18A19GLY0-0.0020.00314.8760.4050.4050.0000.0000.0000.000
19A20ILE0-0.016-0.01712.930-0.370-0.3700.0000.0000.0000.000
20A21GLY00.0340.01917.5400.3670.3670.0000.0000.0000.000
21A22THR0-0.068-0.01720.9420.0210.0210.0000.0000.0000.000
22A23PRO00.039-0.00324.5980.3520.3520.0000.0000.0000.000
23A24PRO0-0.002-0.00220.703-0.245-0.2450.0000.0000.0000.000
24A25GLN00.0200.01218.645-0.235-0.2350.0000.0000.0000.000
25A26THR0-0.001-0.01617.199-0.534-0.5340.0000.0000.0000.000
26A27PHE00.0060.02112.2130.4580.4580.0000.0000.0000.000
27A28LYS10.9130.95510.70117.51917.5190.0000.0000.0000.000
28A29VAL0-0.038-0.0297.946-0.664-0.6640.0000.0000.0000.000
29A30VAL00.0740.0472.976-0.5710.4000.113-0.187-0.8960.000
30A31PHE0-0.002-0.0025.434-0.413-0.4130.0000.0000.0000.000
31A32ASP-1-0.714-0.8171.855-139.199-135.02412.299-8.128-8.346-0.105
32A33THR0-0.006-0.0034.642-0.348-0.181-0.001-0.020-0.1460.000
33A34GLY00.0010.0002.6547.9598.5310.169-0.237-0.504-0.001
34A35SER0-0.112-0.0802.9998.0279.6520.069-0.523-1.171-0.002
35A36SER00.0400.0004.7422.0222.099-0.001-0.007-0.0700.000
36A37ASN0-0.030-0.0136.5932.7702.7700.0000.0000.0000.000
37A38VAL00.0400.0326.222-2.958-2.9580.0000.0000.0000.000
38A39TRP0-0.036-0.0203.2282.7903.7030.022-0.242-0.6930.002
39A40VAL00.0470.0308.041-1.478-1.4780.0000.0000.0000.000
40A41PRO00.0330.02210.0560.6460.6460.0000.0000.0000.000
41A42SER0-0.006-0.02511.7320.7820.7820.0000.0000.0000.000
42A43SER00.0280.01015.0410.2770.2770.0000.0000.0000.000
43A44LYS10.8610.91717.94313.08813.0880.0000.0000.0000.000
44A52CYS0-0.108-0.03110.162-0.154-0.1540.0000.0000.0000.000
45A46SER00.0220.01916.5900.5190.5190.0000.0000.0000.000
46A47ARG10.8820.91916.71012.26712.2670.0000.0000.0000.000
47A48LEU00.0090.00617.7000.1670.1670.0000.0000.0000.000
48A49TYR0-0.066-0.05112.271-0.332-0.3320.0000.0000.0000.000
49A50THR00.013-0.01011.255-0.244-0.2440.0000.0000.0000.000
50A51ALA00.0900.0398.2680.2450.2450.0000.0000.0000.000
51A53VAL0-0.057-0.02213.3830.7850.7850.0000.0000.0000.000
52A54TYR0-0.062-0.03711.6670.6600.6600.0000.0000.0000.000
53A55HIS00.0050.0006.6990.8630.8630.0000.0000.0000.000
54A56LYS10.8090.90711.56016.45516.4550.0000.0000.0000.000
55A57LEU0-0.042-0.02113.881-0.768-0.7680.0000.0000.0000.000
56A58PHE0-0.031-0.02315.4070.3460.3460.0000.0000.0000.000
57A59ASP-1-0.789-0.87617.078-12.190-12.1900.0000.0000.0000.000
58A60ALA00.0210.00520.0740.1200.1200.0000.0000.0000.000
59A61SER0-0.088-0.06021.8960.4100.4100.0000.0000.0000.000
60A62ASP-1-0.930-0.94923.303-10.746-10.7460.0000.0000.0000.000
61A63SER0-0.082-0.07422.076-0.045-0.0450.0000.0000.0000.000
62A64SER0-0.036-0.02124.3800.1560.1560.0000.0000.0000.000
63A65SER0-0.058-0.04422.6890.3330.3330.0000.0000.0000.000
64A66TYR0-0.037-0.01518.956-0.096-0.0960.0000.0000.0000.000
65A67LYS10.8250.90921.74212.80212.8020.0000.0000.0000.000
66A68HIS00.0640.04518.871-0.259-0.2590.0000.0000.0000.000
67A69ASN00.8140.87419.37014.01214.0120.0000.0000.0000.000
68A70GLY00.0410.04321.1710.2760.2760.0000.0000.0000.000
69A71THR0-0.064-0.04417.4790.1030.1030.0000.0000.0000.000
70A72GLU-1-0.875-0.92016.016-13.924-13.9240.0000.0000.0000.000
71A73LEU0-0.055-0.03210.685-0.170-0.1700.0000.0000.0000.000
72A74THR0-0.005-0.00810.5550.2530.2530.0000.0000.0000.000
73A75LEU0-0.039-0.0085.680-0.375-0.3750.0000.0000.0000.000
74A76ARG10.9550.9756.34521.33421.3340.0000.0000.0000.000
75A77TYR00.0410.0062.227-13.597-8.5696.214-2.495-8.746-0.002
76A78SER00.022-0.0061.935-1.670-0.2464.760-1.664-4.520-0.008
77A79THR0-0.007-0.0271.633-14.503-20.45925.898-8.839-11.1020.040
78A80GLY00.0360.0234.070-1.217-0.8230.005-0.058-0.3400.001
79A81THR0-0.081-0.0505.842-1.475-1.4750.0000.0000.0000.000
80A82VAL00.0240.0295.5200.8970.8970.0000.0000.0000.000
81A83SER0-0.019-0.0298.006-1.027-1.0270.0000.0000.0000.000
82A84GLY00.0540.02911.272-0.096-0.0960.0000.0000.0000.000
83A85PHE00.0070.00412.8500.3570.3570.0000.0000.0000.000
84A86LEU0-0.050-0.00713.275-0.506-0.5060.0000.0000.0000.000
85A87SER0-0.023-0.03315.5761.2201.2200.0000.0000.0000.000
86A88GLN00.0280.00116.629-0.378-0.3780.0000.0000.0000.000
87A89ASP-1-0.689-0.79818.135-12.422-12.4220.0000.0000.0000.000
88A90ILE00.004-0.00218.663-0.556-0.5560.0000.0000.0000.000
89A91ILE0-0.006-0.00413.443-0.395-0.3950.0000.0000.0000.000
90A92THR0-0.047-0.01517.2840.5750.5750.0000.0000.0000.000
91A93VAL00.0500.00613.926-0.725-0.7250.0000.0000.0000.000
92A94GLY00.0730.04216.5450.3590.3590.0000.0000.0000.000
93A95GLY0-0.028-0.00918.6210.6460.6460.0000.0000.0000.000
94A96ILE00.0000.00319.2210.6290.6290.0000.0000.0000.000
95A97THR00.0020.01119.434-0.589-0.5890.0000.0000.0000.000
96A98VAL00.0140.01616.6870.3450.3450.0000.0000.0000.000
97A99THR0-0.028-0.01319.6970.3220.3220.0000.0000.0000.000
98A100GLN0-0.003-0.00313.2630.2090.2090.0000.0000.0000.000
99A101MET0-0.033-0.01015.8390.5890.5890.0000.0000.0000.000
100A102PHE0-0.014-0.00711.586-1.349-1.3490.0000.0000.0000.000
101A103GLY0-0.003-0.00510.4951.2001.2000.0000.0000.0000.000
102A104GLU-1-0.703-0.80711.016-15.121-15.1210.0000.0000.0000.000
103A105VAL0-0.043-0.0167.8310.4690.4690.0000.0000.0000.000
104A106THR00.041-0.00111.2600.4250.4250.0000.0000.0000.000
105A107GLU-1-0.860-0.89112.074-14.635-14.6350.0000.0000.0000.000
106A108MET00.0120.0087.419-0.825-0.8250.0000.0000.0000.000
107A109PRO00.000-0.0068.1100.7200.7200.0000.0000.0000.000
108A110ALA00.0290.0147.632-0.996-0.9960.0000.0000.0000.000
109A111LEU0-0.0120.0166.218-0.633-0.6330.0000.0000.0000.000
110A112PRO00.026-0.0042.584-0.3670.9650.444-0.419-1.3560.003
111A113PHE00.031-0.0073.026-4.791-2.4980.168-0.847-1.614-0.007
112A114MET0-0.0200.0064.426-0.278-0.152-0.001-0.004-0.1210.000
113A115LEU0-0.048-0.0132.5640.0391.2750.621-0.427-1.4300.001
114A116ALA0-0.0210.0132.882-4.751-2.8070.419-0.820-1.544-0.006
115A117GLU-1-0.753-0.8353.493-16.218-16.0940.0280.046-0.1980.000
116A118PHE0-0.061-0.0223.071-4.131-0.3501.251-1.173-3.8590.012
117A119ASP-1-0.792-0.9007.059-19.460-19.4600.0000.0000.0000.000
118A120GLY00.002-0.0146.8180.4000.4000.0000.0000.0000.000
119A121VAL0-0.057-0.0122.060-2.176-3.6376.858-1.217-4.1810.003
120A122VAL00.011-0.0054.9673.6493.750-0.001-0.009-0.0910.000
121A123GLY0-0.0090.0055.876-3.543-3.5430.0000.0000.0000.000
122A124MET0-0.042-0.0256.6505.8995.8990.0000.0000.0000.000
123A125GLY00.0150.0187.5011.9581.9580.0000.0000.0000.000
124A126PHE0-0.0090.0048.8012.6662.6660.0000.0000.0000.000
125A127ILE00.0300.01411.366-1.812-1.8120.0000.0000.0000.000
126A128GLU-1-0.840-0.94513.352-21.082-21.0820.0000.0000.0000.000
127A129GLN0-0.0120.0076.5042.8522.8520.0000.0000.0000.000
128A130ALA0-0.0030.0228.398-2.813-2.8130.0000.0000.0000.000
129A131ILE00.0090.0057.7652.8482.8480.0000.0000.0000.000
130A132GLY00.0190.00411.1140.4030.4030.0000.0000.0000.000
131A133ARG10.8300.90613.67418.15118.1510.0000.0000.0000.000
132A134VAL00.0080.01012.3071.1491.1490.0000.0000.0000.000
133A135THR00.0330.00613.608-1.308-1.3080.0000.0000.0000.000
134A136PRO00.0510.04211.3430.1100.1100.0000.0000.0000.000
135A137ILE00.0390.01611.2831.4371.4370.0000.0000.0000.000
136A138PHE00.0400.00813.0491.2241.2240.0000.0000.0000.000
137A139ASP-1-0.802-0.88214.933-19.003-19.0030.0000.0000.0000.000
138A140ASN0-0.021-0.01616.0251.8471.8470.0000.0000.0000.000
139A141ILE0-0.0010.00415.7540.8880.8880.0000.0000.0000.000
140A142ILE0-0.031-0.00918.7010.9820.9820.0000.0000.0000.000
141A143SER0-0.076-0.04820.7220.9180.9180.0000.0000.0000.000
142A144GLN0-0.071-0.04521.9080.2750.2750.0000.0000.0000.000
143A145GLY0-0.0040.00423.9890.5080.5080.0000.0000.0000.000
144A146VAL0-0.064-0.02522.3200.2720.2720.0000.0000.0000.000
145A147LEU0-0.050-0.02818.885-0.270-0.2700.0000.0000.0000.000
146A148LYS10.8260.90823.52012.38812.3880.0000.0000.0000.000
147A149GLU-1-0.791-0.88423.335-12.051-12.0510.0000.0000.0000.000
148A150ASP-1-0.786-0.87418.505-17.914-17.9140.0000.0000.0000.000
149A151VAL0-0.013-0.01217.886-0.457-0.4570.0000.0000.0000.000
150A152PHE0-0.012-0.00710.8010.4120.4120.0000.0000.0000.000
151A153SER00.021-0.00214.875-1.078-1.0780.0000.0000.0000.000
152A154PHE0-0.017-0.0158.718-0.350-0.3500.0000.0000.0000.000
153A155TYR0-0.038-0.03613.5570.2640.2640.0000.0000.0000.000
154A156TYR0-0.039-0.0537.3770.0910.0910.0000.0000.0000.000
155A157ASN00.0250.02813.8040.7420.7420.0000.0000.0000.000
156A158ARG10.8270.86813.69115.36215.3620.0000.0000.0000.000
157A159ASP-1-0.829-0.90715.786-13.959-13.9590.0000.0000.0000.000
158A160SER0-0.069-0.03911.367-0.905-0.9050.0000.0000.0000.000
159A161GLU-1-0.958-0.95813.414-12.669-12.6690.0000.0000.0000.000
160A162ASN0-0.029-0.01415.6840.7150.7150.0000.0000.0000.000
161A163SER00.000-0.00218.050-0.706-0.7060.0000.0000.0000.000
162A164GLN0-0.072-0.05020.236-0.048-0.0480.0000.0000.0000.000
163A165SER00.0170.01817.7610.0520.0520.0000.0000.0000.000
164A166LEU0-0.049-0.01218.012-0.221-0.2210.0000.0000.0000.000
165A167GLY00.0720.03514.128-0.241-0.2410.0000.0000.0000.000
166A168GLY00.0610.00514.000-1.199-1.1990.0000.0000.0000.000
167A169GLN0-0.053-0.03115.0120.5650.5650.0000.0000.0000.000
168A170ILE00.0060.02710.283-0.974-0.9740.0000.0000.0000.000
169A171VAL0-0.034-0.02214.6351.4401.4400.0000.0000.0000.000
170A172LEU00.0210.00714.131-0.600-0.6000.0000.0000.0000.000
171A173GLY00.0340.00617.7931.0171.0170.0000.0000.0000.000
172A174GLY0-0.048-0.03020.0670.9850.9850.0000.0000.0000.000
173A175SER00.012-0.01219.566-1.335-1.3350.0000.0000.0000.000
174A176ASP-1-0.793-0.89220.722-13.299-13.2990.0000.0000.0000.000
175A177PRO0-0.014-0.00522.596-0.203-0.2030.0000.0000.0000.000
176A178GLN0-0.0350.00124.7540.5880.5880.0000.0000.0000.000
177A179HIS0-0.004-0.00820.1190.3100.3100.0000.0000.0000.000
178A180TYR0-0.031-0.00420.581-0.674-0.6740.0000.0000.0000.000
179A181GLU-1-0.898-0.93022.169-11.275-11.2750.0000.0000.0000.000
180A182GLY00.0150.00423.780-0.414-0.4140.0000.0000.0000.000
181A183ASN0-0.039-0.02925.545-0.036-0.0360.0000.0000.0000.000
182A184PHE00.009-0.00218.468-0.151-0.1510.0000.0000.0000.000
183A185HIS0-0.022-0.00320.9700.6160.6160.0000.0000.0000.000
184A186TYR0-0.034-0.04819.592-0.423-0.4230.0000.0000.0000.000
185A187ILE0-0.040-0.01216.6300.6550.6550.0000.0000.0000.000
186A188ASN00.006-0.00417.746-0.938-0.9380.0000.0000.0000.000
187A189LEU0-0.042-0.00713.064-0.451-0.4510.0000.0000.0000.000
188A190ILE0-0.061-0.02415.3911.1451.1450.0000.0000.0000.000
189A191LYS10.7850.88011.26325.84625.8460.0000.0000.0000.000
190A192THR00.0590.04114.138-0.789-0.7890.0000.0000.0000.000
191A193GLY0-0.013-0.01312.413-0.707-0.7070.0000.0000.0000.000
192A194VAL0-0.075-0.0456.366-2.735-2.7350.0000.0000.0000.000
193A195TRP00.0470.0218.5153.9093.9090.0000.0000.0000.000
194A196GLN0-0.021-0.0179.934-0.323-0.3230.0000.0000.0000.000
195A197ILE00.0630.02811.3351.9681.9680.0000.0000.0000.000
196A198GLN0-0.032-0.02114.688-0.001-0.0010.0000.0000.0000.000
197A199MET0-0.057-0.00213.760-0.248-0.2480.0000.0000.0000.000
198A200LYS10.9070.95317.87813.50613.5060.0000.0000.0000.000
199A201GLY00.0970.04519.3570.8420.8420.0000.0000.0000.000
200A202VAL0-0.037-0.01614.776-0.809-0.8090.0000.0000.0000.000
201A203SER0-0.009-0.02518.0100.7360.7360.0000.0000.0000.000
202A204VAL00.0110.00918.191-0.637-0.6370.0000.0000.0000.000
203A205GLY00.0090.00220.6310.5840.5840.0000.0000.0000.000
204A206SER0-0.067-0.03723.5450.1410.1410.0000.0000.0000.000
205A207SER0-0.028-0.00423.9230.4210.4210.0000.0000.0000.000
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