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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: P4MNX

Calculation Name: 4M7G-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4M7G

Chain ID: A

ChEMBL ID:

UniProt ID: P24664

Base Structure: X-ray

Registration Date: 2017-11-21

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20171117
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 221
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2473991.687631
FMO2-HF: Nuclear repulsion 2391514.28233
FMO2-HF: Total energy -82477.405302
FMO2-MP2: Total energy -82713.574035


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:ILE)


Summations of interaction energy for fragment #1(A:1:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-405.857-389.45235.272-20.662-31.014-0.211
Interaction energy analysis for fragmet #1(A:1:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.738 / q_NPA : 0.861
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3GLY00.0340.0123.3382.4604.4050.096-0.764-1.2760.000
4A4GLY0-0.041-0.0262.5442.0713.0470.738-0.649-1.065-0.003
5A5GLU-1-0.944-0.9613.282-24.781-25.1100.0330.456-0.1590.000
6A6ASP-1-0.882-0.9325.611-32.823-32.8230.0000.0000.0000.000
7A7ALA0-0.043-0.0276.6612.2462.2460.0000.0000.0000.000
8A8ASN00.0070.0008.417-1.281-1.2810.0000.0000.0000.000
9A9VAL00.0370.00810.393-0.018-0.0180.0000.0000.0000.000
10A10GLN0-0.001-0.02111.279-0.141-0.1410.0000.0000.0000.000
11A11ASP-1-0.919-0.94911.789-17.715-17.7150.0000.0000.0000.000
12A12HIS0-0.090-0.0439.252-0.689-0.6890.0000.0000.0000.000
13A13PRO00.0030.00711.028-1.163-1.1630.0000.0000.0000.000
14A14PHE00.0500.0199.0240.4850.4850.0000.0000.0000.000
15A15THR0-0.023-0.0046.857-0.761-0.7610.0000.0000.0000.000
16A16VAL0-0.026-0.0199.8940.8180.8180.0000.0000.0000.000
17A17ALA00.0270.0189.698-2.188-2.1880.0000.0000.0000.000
18A18LEU0-0.037-0.01411.0842.6262.6260.0000.0000.0000.000
19A19VAL00.014-0.00512.826-1.472-1.4720.0000.0000.0000.000
20A20THR00.0300.01015.4180.7140.7140.0000.0000.0000.000
21A21PRO0-0.046-0.03718.428-0.059-0.0590.0000.0000.0000.000
22A22ASP-1-0.905-0.92919.137-16.212-16.2120.0000.0000.0000.000
23A23GLY0-0.021-0.00818.2080.1230.1230.0000.0000.0000.000
24A24GLN0-0.063-0.02913.705-2.534-2.5340.0000.0000.0000.000
25A25GLN0-0.028-0.0317.830-0.296-0.2960.0000.0000.0000.000
26A26PHE0-0.041-0.02010.753-0.446-0.4460.0000.0000.0000.000
2743CYS0-0.068-0.0089.052-1.163-1.1630.0000.0000.0000.000
28A28GLY00.0540.0337.431-0.163-0.1630.0000.0000.0000.000
29A29GLY00.0320.0118.4752.1432.1430.0000.0000.0000.000
30A30THR0-0.013-0.0039.773-1.506-1.5060.0000.0000.0000.000
31A31LEU0-0.061-0.01711.7851.2191.2190.0000.0000.0000.000
32A32ALA00.0430.01815.250-0.074-0.0740.0000.0000.0000.000
33A33ALA00.004-0.00917.4760.8020.8020.0000.0000.0000.000
34A34PRO00.0150.00119.636-0.465-0.4650.0000.0000.0000.000
35A35ASN00.0220.01521.339-0.369-0.3690.0000.0000.0000.000
36A36LYS10.8480.93819.77812.32412.3240.0000.0000.0000.000
37A37VAL00.0330.01613.672-0.396-0.3960.0000.0000.0000.000
38A38VAL00.0070.01213.6000.5830.5830.0000.0000.0000.000
39A39THR00.018-0.01511.511-1.350-1.3500.0000.0000.0000.000
40A40ALA00.0390.02611.6950.8800.8800.0000.0000.0000.000
41A41ALA0-0.033-0.00513.4710.3560.3560.0000.0000.0000.000
42A42HIS0-0.090-0.07511.515-0.796-0.7960.0000.0000.0000.000
43A44THR0-0.016-0.02414.8690.4930.4930.0000.0000.0000.000
44A45VAL00.0140.01118.0901.0681.0680.0000.0000.0000.000
45A46GLY0-0.049-0.03620.713-0.290-0.2900.0000.0000.0000.000
46A47SER0-0.0300.01720.5720.0830.0830.0000.0000.0000.000
47A48GLN0-0.058-0.04222.7840.5520.5520.0000.0000.0000.000
48A49PRO0-0.010-0.01723.488-0.446-0.4460.0000.0000.0000.000
49A50ALA0-0.020-0.01623.335-0.326-0.3260.0000.0000.0000.000
50A51ASP-1-0.865-0.92322.018-12.897-12.8970.0000.0000.0000.000
51A52ILE0-0.014-0.00917.035-0.736-0.7360.0000.0000.0000.000
52A53ASN0-0.036-0.01518.4301.1831.1830.0000.0000.0000.000
53A54VAL00.0280.00714.823-1.005-1.0050.0000.0000.0000.000
54A55VAL0-0.022-0.00713.9221.2101.2100.0000.0000.0000.000
55A56SER00.013-0.01113.657-1.486-1.4860.0000.0000.0000.000
56A57GLY00.0450.01914.5620.6750.6750.0000.0000.0000.000
57A58ARG10.8350.91913.86319.32319.3230.0000.0000.0000.000
58A59THR00.0320.02410.219-1.463-1.4630.0000.0000.0000.000
59A60VAL00.0370.03210.226-2.642-2.6420.0000.0000.0000.000
60A61MET0-0.0090.00410.0303.0643.0640.0000.0000.0000.000
61A62SER0-0.039-0.04712.5642.0022.0020.0000.0000.0000.000
62A63SER0-0.065-0.03615.1531.8601.8600.0000.0000.0000.000
63A64ASN0-0.039-0.04617.267-0.377-0.3770.0000.0000.0000.000
64A65GLU-1-0.943-0.95317.519-15.385-15.3850.0000.0000.0000.000
65A66GLY0-0.0030.00917.467-0.662-0.6620.0000.0000.0000.000
66A67THR0-0.043-0.02318.2151.1791.1790.0000.0000.0000.000
67A68VAL0-0.006-0.00118.335-0.827-0.8270.0000.0000.0000.000
68A69SER0-0.046-0.01919.4720.9930.9930.0000.0000.0000.000
69A70LYS10.9580.97420.59510.88310.8830.0000.0000.0000.000
70A71VAL00.0430.02519.5830.0930.0930.0000.0000.0000.000
71A72THR0-0.062-0.04022.7150.3710.3710.0000.0000.0000.000
72A73ASN0-0.065-0.04523.9610.2520.2520.0000.0000.0000.000
73A74VAL00.0620.03620.304-0.492-0.4920.0000.0000.0000.000
74A75TRP00.0250.03519.9900.3210.3210.0000.0000.0000.000
75A76VAL00.0160.00120.409-0.879-0.8790.0000.0000.0000.000
76A77HIS00.0380.03720.7100.5790.5790.0000.0000.0000.000
77A78PRO0-0.011-0.01722.481-0.032-0.0320.0000.0000.0000.000
78A79GLU-1-0.933-0.97924.886-10.767-10.7670.0000.0000.0000.000
79A80TYR0-0.037-0.00818.177-0.319-0.3190.0000.0000.0000.000
80A81GLN0-0.083-0.04622.3080.7010.7010.0000.0000.0000.000
81A82ASP-1-0.877-0.95919.792-16.118-16.1180.0000.0000.0000.000
82A83ALA00.0440.04014.8140.2910.2910.0000.0000.0000.000
83A84ALA00.0330.02516.936-0.009-0.0090.0000.0000.0000.000
84A85LYS10.8750.93118.20113.64313.6430.0000.0000.0000.000
85A86GLY0-0.0060.00018.6120.6710.6710.0000.0000.0000.000
86A87PHE00.023-0.00619.599-0.065-0.0650.0000.0000.0000.000
87A88ASP-1-0.733-0.82014.166-20.072-20.0720.0000.0000.0000.000
88A89VAL0-0.040-0.02614.770-1.082-1.0820.0000.0000.0000.000
89A90SER0-0.020-0.00916.1940.8010.8010.0000.0000.0000.000
90A91VAL0-0.001-0.00316.654-0.659-0.6590.0000.0000.0000.000
91A92LEU00.0170.02216.0950.6740.6740.0000.0000.0000.000
92A93THR0-0.0150.00119.4720.0940.0940.0000.0000.0000.000
93A94LEU00.001-0.00618.4020.0620.0620.0000.0000.0000.000
94A95GLU-1-0.913-0.96222.411-11.430-11.4300.0000.0000.0000.000
95A96ALA0-0.014-0.01524.4080.5820.5820.0000.0000.0000.000
96A97PRO0-0.085-0.03923.624-0.468-0.4680.0000.0000.0000.000
97A98VAL00.0290.02918.5170.3510.3510.0000.0000.0000.000
98A99LYS10.8860.93021.53212.02712.0270.0000.0000.0000.000
99A100GLU-1-0.860-0.91516.075-15.392-15.3920.0000.0000.0000.000
100A101ALA0-0.003-0.00318.1480.2400.2400.0000.0000.0000.000
101A102PRO0-0.031-0.00416.514-0.771-0.7710.0000.0000.0000.000
102A103ILE0-0.028-0.01312.3420.3340.3340.0000.0000.0000.000
103A104GLU-1-0.941-0.96916.697-12.296-12.2960.0000.0000.0000.000
104A105LEU00.003-0.00316.026-0.931-0.9310.0000.0000.0000.000
105A106ALA0-0.0070.00716.6320.7650.7650.0000.0000.0000.000
106A107LYS11.0030.99518.28511.71311.7130.0000.0000.0000.000
107A108ALA00.037-0.00120.642-0.404-0.4040.0000.0000.0000.000
108A109ASP-1-0.981-0.97522.068-11.511-11.5110.0000.0000.0000.000
109A110ASP-1-0.831-0.89818.101-14.352-14.3520.0000.0000.0000.000
110A111ALA00.007-0.02620.240-0.203-0.2030.0000.0000.0000.000
111A112GLY0-0.035-0.02016.303-0.066-0.0660.0000.0000.0000.000
112A113TYR0-0.034-0.03515.225-0.599-0.5990.0000.0000.0000.000
113A114ALA0-0.0360.00217.5630.1970.1970.0000.0000.0000.000
114A115PRO0-0.005-0.01117.505-0.714-0.7140.0000.0000.0000.000
115A116ASP-1-0.923-0.96216.029-14.700-14.7000.0000.0000.0000.000
116A117THR0-0.093-0.04714.2610.1190.1190.0000.0000.0000.000
117A118ALA0-0.026-0.01212.184-1.080-1.0800.0000.0000.0000.000
118A119ALA00.0160.0069.3000.8190.8190.0000.0000.0000.000
119A120THR0-0.064-0.0326.771-1.164-1.1640.0000.0000.0000.000
120A121ILE00.0100.0162.5070.2001.3241.072-0.355-1.8400.002
121A122LEU0-0.016-0.0252.984-3.949-2.5400.508-0.498-1.419-0.005
122A123GLY00.0040.0002.622-0.0101.1711.586-0.715-2.051-0.009
123A124TRP0-0.003-0.0153.158-6.002-5.1850.207-0.174-0.850-0.004
124A125GLY00.0460.0273.3166.1106.6030.024-0.165-0.353-0.001
125A126ASN0-0.037-0.0362.911-9.599-7.8140.312-1.100-0.998-0.011
126A127THR00.0220.0061.951-28.933-28.7435.921-3.195-2.915-0.040
127A128SER0-0.008-0.0174.0365.9346.083-0.001-0.024-0.1250.000
128A129GLU-1-0.710-0.8366.320-26.406-26.4060.0000.0000.0000.000
129A130GLY0-0.049-0.0298.1232.4662.4660.0000.0000.0000.000
130A131GLY0-0.036-0.0047.9682.8522.8520.0000.0000.0000.000
131A132GLN0-0.030-0.0167.9541.8971.8970.0000.0000.0000.000
132A133GLN00.0600.0185.756-6.483-6.4830.0000.0000.0000.000
133A134ALA00.0100.0154.1114.0934.175-0.001-0.010-0.0710.000
134A135ASP-1-0.795-0.8755.916-22.817-22.8170.0000.0000.0000.000
135A136HIS0-0.046-0.0268.3684.0564.0560.0000.0000.0000.000
136A137LEU0-0.0260.0094.949-4.834-4.8340.0000.0000.0000.000
137A138GLN0-0.021-0.0162.2110.6551.0603.055-1.104-2.355-0.003
138A139LYS10.9660.9802.79421.86523.8410.482-0.977-1.481-0.013
139A140ALA00.0310.0112.576-0.836-0.2021.592-0.520-1.706-0.002
140A141THR0-0.058-0.0313.7452.4222.5060.0050.045-0.1350.000
141A142VAL00.0210.0155.708-0.223-0.2230.0000.0000.0000.000
142A143PRO0-0.0110.0068.3520.8470.8470.0000.0000.0000.000
143A144VAL00.0400.01212.105-0.652-0.6520.0000.0000.0000.000
144A145ASN0-0.060-0.04513.4250.8360.8360.0000.0000.0000.000
145A146SER00.0460.02015.8740.4700.4700.0000.0000.0000.000
146A147ASP-1-0.763-0.89018.989-14.123-14.1230.0000.0000.0000.000
147A148ASP-1-0.935-0.95920.831-12.354-12.3540.0000.0000.0000.000
148A149THR0-0.005-0.01117.020-0.030-0.0300.0000.0000.0000.000
149164CYS00.0030.01711.978-1.419-1.4190.0000.0000.0000.000
150A151LYS10.9180.97317.94812.05512.0550.0000.0000.0000.000
151A152GLN0-0.099-0.05921.2410.2460.2460.0000.0000.0000.000
152A153ALA0-0.0160.02316.7830.0660.0660.0000.0000.0000.000
153A154TYR0-0.001-0.01912.5600.1410.1410.0000.0000.0000.000
154A155GLY0-0.018-0.01519.4060.3760.3760.0000.0000.0000.000
155A156GLU-1-0.948-0.99119.650-14.745-14.7450.0000.0000.0000.000
156A157TYR0-0.051-0.04016.511-0.278-0.2780.0000.0000.0000.000
157A158THR00.0190.00219.5210.7920.7920.0000.0000.0000.000
158A159PRO0-0.0140.00019.741-0.566-0.5660.0000.0000.0000.000
159A160ASP-1-0.944-0.97520.820-11.778-11.7780.0000.0000.0000.000
160A161ALA0-0.030-0.01219.4120.0630.0630.0000.0000.0000.000
161A162MET0-0.073-0.01315.630-0.979-0.9790.0000.0000.0000.000
162A163VAL00.0010.00312.5951.0161.0160.0000.0000.0000.000
163A165ALA00.0270.0199.0581.1871.1870.0000.0000.0000.000
164A166GLY00.0420.0249.249-2.384-2.3840.0000.0000.0000.000
165A167VAL0-0.003-0.00110.2531.9881.9880.0000.0000.0000.000
166A168PRO00.0130.00112.339-0.487-0.4870.0000.0000.0000.000
167A169GLU-1-0.918-0.97114.740-16.215-16.2150.0000.0000.0000.000
168A170GLY0-0.0280.00410.818-0.451-0.4510.0000.0000.0000.000
169A171GLY0-0.032-0.0349.1380.8160.8160.0000.0000.0000.000
170A172VAL0-0.050-0.0374.553-2.257-2.174-0.001-0.008-0.0740.000
171A173ASP-1-0.778-0.8743.869-32.260-31.971-0.001-0.059-0.2300.000
172A174THR0-0.056-0.0102.319-17.331-14.8024.415-3.099-3.845-0.024
173199CYS0-0.099-0.0313.0168.6679.0790.0390.232-0.683-0.002
174A176GLN00.0900.0084.514-0.851-0.719-0.001-0.003-0.1280.000
175A177GLY0-0.0470.0035.255-6.253-6.2530.0000.0000.0000.000
176A178ASP-1-0.736-0.8491.795-126.021-126.04915.193-7.968-7.197-0.096
177A179SER0-0.013-0.0204.9273.1313.198-0.001-0.008-0.0580.000
178A180GLY00.017-0.0018.0900.5580.5580.0000.0000.0000.000
179A181GLY0-0.016-0.0025.8882.0872.0870.0000.0000.0000.000
180A182PRO0-0.050-0.0155.6621.3361.3360.0000.0000.0000.000
181A183MET00.0390.0315.478-3.717-3.7170.0000.0000.0000.000
182A184VAL0-0.018-0.0137.8622.4842.4840.0000.0000.0000.000
183A185VAL00.0460.01710.438-0.605-0.6050.0000.0000.0000.000
184A186ASN0-0.054-0.03413.2780.5230.5230.0000.0000.0000.000
185A187ASN0-0.022-0.01714.399-0.014-0.0140.0000.0000.0000.000
186A188LYS10.8920.96314.97714.40714.4070.0000.0000.0000.000
187A189LEU00.0080.00910.234-0.917-0.9170.0000.0000.0000.000
188A190ILE00.0170.00611.7121.0491.0490.0000.0000.0000.000
189A191GLY00.0150.01110.8600.9480.9480.0000.0000.0000.000
190A192VAL0-0.0180.0099.482-0.912-0.9120.0000.0000.0000.000
191A193THR00.006-0.0024.9262.1472.1470.0000.0000.0000.000
192A194SER0-0.033-0.0357.9271.0591.0590.0000.0000.0000.000
193A195TRP00.0470.00210.777-0.107-0.1070.0000.0000.0000.000
194A196GLY00.0550.02510.827-0.747-0.7470.0000.0000.0000.000
195A197GLU-1-0.904-0.94311.866-17.330-17.3300.0000.0000.0000.000
196A198GLY0-0.049-0.03111.1650.0400.0400.0000.0000.0000.000
197A200ALA0-0.042-0.0226.5020.9480.9480.0000.0000.0000.000
198A201ARG10.8490.9078.29424.20924.2090.0000.0000.0000.000
199A202PRO00.0230.01012.044-0.033-0.0330.0000.0000.0000.000
200A203GLY0-0.041-0.01714.7300.5270.5270.0000.0000.0000.000
201A204LYS10.7560.88613.12918.16218.1620.0000.0000.0000.000
202A205PRO0-0.0180.01110.955-1.871-1.8710.0000.0000.0000.000
203A206GLY00.1150.0818.1400.5870.5870.0000.0000.0000.000
204A207VAL0-0.014-0.0249.1992.1052.1050.0000.0000.0000.000
205A208TYR0-0.007-0.0165.142-0.804-0.8040.0000.0000.0000.000
206A209ALA00.0380.01511.2321.7301.7300.0000.0000.0000.000
207A210ARG10.9040.95313.39414.08514.0850.0000.0000.0000.000
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