FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: P53ZP

Calculation Name: 2XNE-A-Xray8

Preferred Name: Serine/threonine-protein kinase Aurora-A

Target Type: SINGLE PROTEIN

Ligand Name: 3-chloro-n-(4-morpholin-4-ylphenyl)-6-pyridin-3-ylimidazo[1,2-a]pyrazin-8-amine

ligand 3-letter code: ASH

PDB ID: 2XNE

Chain ID: A

ChEMBL ID: CHEMBL4722

UniProt ID: O14965

Base Structure: X-ray

Registration Date: 2017-03-09

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 261
LigandResidueName ASH
LigandFragmentNumber 261
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3787457.889267
FMO2-HF: Nuclear repulsion 3681259.211736
FMO2-HF: Total energy -106198.677531
FMO2-MP2: Total energy -106512.37849


3D Structure
Snapshot
 
Ligand structure

ASH

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-48.902-46.11533.840-17.162-19.462-0.035


Interactive mode: IFIE and PIEDA for fragment #261(A:387:SER)


Summations of interaction energy for fragment #261(A:387:SER)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-48.902-46.11533.84-17.162-19.4620.035
Interaction energy analysis for fragmet #261(A:387:SER)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.909 / q_NPA : -0.919
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A1389ASH0-0.0010.01422.629-0.142-0.1420.0000.0000.0000.000
2A128TRP10.7870.89033.252-8.677-8.6770.0000.0000.0000.000
3A129ALA00.1110.04338.025-0.120-0.1200.0000.0000.0000.000
4A130LEU00.0450.02838.3260.1820.1820.0000.0000.0000.000
5A131GLU-1-0.896-0.94639.9497.5527.5520.0000.0000.0000.000
6A132ASP-1-0.838-0.92637.9438.1368.1360.0000.0000.0000.000
7A133PHE0-0.062-0.03933.2660.2690.2690.0000.0000.0000.000
8A134GLU-1-0.889-0.91836.4228.3108.3100.0000.0000.0000.000
9A135ILE0-0.037-0.02534.7470.3400.3400.0000.0000.0000.000
10A136GLY00.0450.02133.479-0.168-0.1680.0000.0000.0000.000
11A137ARG10.9280.96326.210-11.991-11.9910.0000.0000.0000.000
12A138PRO00.008-0.01231.6860.2310.2310.0000.0000.0000.000
13A139LEU0-0.071-0.03025.5600.0970.0970.0000.0000.0000.000
14A140GLY00.0190.00827.0410.3700.3700.0000.0000.0000.000
15A141LYS10.9420.98128.507-10.248-10.2480.0000.0000.0000.000
16A142GLY00.0740.02729.0790.4110.4110.0000.0000.0000.000
17A143LYS10.8920.94430.375-9.814-9.8140.0000.0000.0000.000
18A144PHE0-0.002-0.01732.002-0.232-0.2320.0000.0000.0000.000
19A145GLY00.0570.02433.379-0.340-0.3400.0000.0000.0000.000
20A146ASN0-0.0170.00932.0030.4220.4220.0000.0000.0000.000
21A147VAL00.0420.02026.850-0.073-0.0730.0000.0000.0000.000
22A148TYR00.0080.00729.9460.1020.1020.0000.0000.0000.000
23A149LEU00.0310.02627.3720.2170.2170.0000.0000.0000.000
24A150ALA0-0.016-0.00230.003-0.456-0.4560.0000.0000.0000.000
25A151ARG10.8900.94830.702-8.967-8.9670.0000.0000.0000.000
26A152GLU-1-0.884-0.93432.7869.3239.3230.0000.0000.0000.000
27A153LYS10.8810.95634.705-7.871-7.8710.0000.0000.0000.000
28A154GLN00.031-0.00137.9090.1860.1860.0000.0000.0000.000
29A155SER00.0370.01732.7950.0220.0220.0000.0000.0000.000
30A156LYS10.8200.89433.617-8.521-8.5210.0000.0000.0000.000
31A157PHE00.0360.03125.4730.2830.2830.0000.0000.0000.000
32A158ILE00.014-0.00225.984-0.254-0.2540.0000.0000.0000.000
33A159LEU0-0.030-0.02626.3050.4770.4770.0000.0000.0000.000
34A160ALA0-0.006-0.00325.878-0.222-0.2220.0000.0000.0000.000
35A161LEU00.0030.00827.704-0.082-0.0820.0000.0000.0000.000
36A162LYS10.8670.94326.377-11.903-11.9030.0000.0000.0000.000
37A163VAL00.0260.00830.765-0.257-0.2570.0000.0000.0000.000
38A164LEU0-0.042-0.01431.5530.0520.0520.0000.0000.0000.000
39A165PHE00.0450.01335.421-0.224-0.2240.0000.0000.0000.000
40A166LYS10.8290.92534.952-8.739-8.7390.0000.0000.0000.000
41A167ALA00.0570.03139.859-0.153-0.1530.0000.0000.0000.000
42A168GLN0-0.038-0.02242.624-0.257-0.2570.0000.0000.0000.000
43A169LEU00.0080.01044.325-0.130-0.1300.0000.0000.0000.000
44A170GLU-1-0.844-0.89844.6896.5036.5030.0000.0000.0000.000
45A171LYS10.8910.92245.184-6.437-6.4370.0000.0000.0000.000
46A172ALA0-0.0140.00540.5190.1610.1610.0000.0000.0000.000
47A173GLY00.0580.02339.518-0.015-0.0150.0000.0000.0000.000
48A174VAL0-0.049-0.04333.1010.0900.0900.0000.0000.0000.000
49A175GLU-1-0.778-0.91434.6398.6738.6730.0000.0000.0000.000
50A176HIS0-0.0170.01835.0710.1990.1990.0000.0000.0000.000
51A177GLN00.0200.00631.0730.2210.2210.0000.0000.0000.000
52A178LEU00.0480.04830.7310.2930.2930.0000.0000.0000.000
53A179ARG10.9350.95031.698-8.049-8.0490.0000.0000.0000.000
54A180ARG10.9330.97329.191-10.078-10.0780.0000.0000.0000.000
55A181GLU-1-0.861-0.90826.66311.50111.5010.0000.0000.0000.000
56A182VAL0-0.006-0.02427.4250.3660.3660.0000.0000.0000.000
57A183GLU-1-0.934-0.96429.01310.04810.0480.0000.0000.0000.000
58A184ILE0-0.047-0.02724.1230.1310.1310.0000.0000.0000.000
59A185GLN0-0.009-0.01222.083-0.086-0.0860.0000.0000.0000.000
60A186SER0-0.056-0.02924.0950.3850.3850.0000.0000.0000.000
61A187HIS0-0.017-0.01226.0770.0150.0150.0000.0000.0000.000
62A188LEU0-0.070-0.02019.4430.2930.2930.0000.0000.0000.000
63A189ARG10.8230.92120.584-12.959-12.9590.0000.0000.0000.000
64A190HIS00.1120.05311.583-0.315-0.3150.0000.0000.0000.000
65A191PRO0-0.007-0.00312.714-0.629-0.6290.0000.0000.0000.000
66A192ASN00.0340.0289.7661.2471.2470.0000.0000.0000.000
67A193ILE0-0.037-0.00513.061-0.236-0.2360.0000.0000.0000.000
68A194LEU0-0.053-0.02016.514-0.345-0.3450.0000.0000.0000.000
69A195ARG10.8660.93317.218-17.536-17.5360.0000.0000.0000.000
70A196LEU0-0.0090.00422.278-0.253-0.2530.0000.0000.0000.000
71A197TYR00.016-0.00923.600-0.042-0.0420.0000.0000.0000.000
72A198GLY00.0140.00928.391-0.319-0.3190.0000.0000.0000.000
73A199TYR0-0.026-0.01331.2490.1570.1570.0000.0000.0000.000
74A200PHE00.0080.00433.907-0.187-0.1870.0000.0000.0000.000
75A201HIS0-0.0170.00037.2950.1930.1930.0000.0000.0000.000
76A202ASP-1-0.791-0.90239.8527.6267.6260.0000.0000.0000.000
77A203ALA0-0.018-0.01143.2770.0250.0250.0000.0000.0000.000
78A204THR0-0.0330.00143.316-0.096-0.0960.0000.0000.0000.000
79A205ARG10.8640.93138.387-7.841-7.8410.0000.0000.0000.000
80A206VAL00.004-0.00535.218-0.095-0.0950.0000.0000.0000.000
81A207TYR00.0080.00034.4390.2280.2280.0000.0000.0000.000
82A208LEU0-0.021-0.01329.244-0.026-0.0260.0000.0000.0000.000
83A209ILE00.0140.00929.3910.2020.2020.0000.0000.0000.000
84A210LEU0-0.004-0.01624.4880.2020.2020.0000.0000.0000.000
85A211GLU-1-0.746-0.88219.10516.48616.4860.0000.0000.0000.000
86A212TYR0-0.021-0.00323.0410.2010.2010.0000.0000.0000.000
87A213ALA00.0400.01918.7480.4190.4190.0000.0000.0000.000
88A214PRO0-0.011-0.02118.896-0.397-0.3970.0000.0000.0000.000
89A215LEU00.0010.01115.308-0.771-0.7710.0000.0000.0000.000
90A216GLY0-0.0170.01318.4280.1730.1730.0000.0000.0000.000
91A217THR00.0240.00318.2720.7960.7960.0000.0000.0000.000
92A218VAL00.0680.02713.246-0.070-0.0700.0000.0000.0000.000
93A219TYR0-0.009-0.00815.804-0.009-0.0090.0000.0000.0000.000
94A220ARG10.8680.92018.826-16.258-16.2580.0000.0000.0000.000
95A221GLU-1-0.870-0.94614.34319.19119.1910.0000.0000.0000.000
96A222LEU00.0320.02114.7940.3410.3410.0000.0000.0000.000
97A223GLN0-0.0070.00017.163-0.922-0.9220.0000.0000.0000.000
98A224LYS10.8430.93117.859-18.103-18.1030.0000.0000.0000.000
99A225LEU0-0.023-0.01013.649-0.249-0.2490.0000.0000.0000.000
100A226SER0-0.0560.00417.015-0.183-0.1830.0000.0000.0000.000
101A227LYS10.9430.95214.126-16.238-16.2380.0000.0000.0000.000
102A228PHE0-0.074-0.0359.7550.4670.4670.0000.0000.0000.000
103A229ASP-1-0.833-0.9067.31533.38133.3810.0000.0000.0000.000
104A230GLU-1-0.763-0.8785.51326.09726.0970.0000.0000.0000.000
105A231GLN00.0740.0422.617-3.929-0.7490.926-2.041-2.0650.023
106A232ARG10.9270.9843.452-19.930-19.1740.093-0.003-0.8450.001
107A233THR0-0.039-0.0325.970-0.667-0.6670.0000.0000.0000.000
108A234ALA00.0070.0042.739-4.461-3.0190.884-0.833-1.4930.008
109A235THR00.0470.0322.9063.6567.8510.602-1.855-2.9420.005
110A236TYR0-0.030-0.0143.573-5.448-5.1990.0130.063-0.3250.001
111A237ILE0-0.009-0.0045.434-3.683-3.6830.0000.0000.0000.000
112A238THR00.0210.0021.711-28.598-32.59613.281-5.236-4.0470.043
113A239GLU-1-0.847-0.9344.81232.04632.207-0.001-0.013-0.1470.000
114A240LEU0-0.046-0.0267.107-4.862-4.8620.0000.0000.0000.000
115A241ALA00.0340.0077.900-3.346-3.3460.0000.0000.0000.000
116A242ASN00.007-0.0056.799-5.274-5.2740.0000.0000.0000.000
117A243ALA0-0.009-0.00810.079-2.512-2.5120.0000.0000.0000.000
118A244LEU00.0190.00812.358-2.176-2.1760.0000.0000.0000.000
119A245SER00.0080.00012.760-1.980-1.9800.0000.0000.0000.000
120A246TYR00.0190.00214.345-1.675-1.6750.0000.0000.0000.000
121A247CYS0-0.084-0.03516.359-1.384-1.3840.0000.0000.0000.000
122A248HIS00.0430.01316.889-0.745-0.7450.0000.0000.0000.000
123A249SER0-0.024-0.00118.957-0.995-0.9950.0000.0000.0000.000
124A250LYS10.8700.94320.740-13.528-13.5280.0000.0000.0000.000
125A251ARG10.8980.92522.530-11.405-11.4050.0000.0000.0000.000
126A252VAL0-0.055-0.03421.784-0.591-0.5910.0000.0000.0000.000
127A253ILE00.0440.03120.8380.6080.6080.0000.0000.0000.000
128A254HIS0-0.034-0.01219.179-0.598-0.5980.0000.0000.0000.000
129A255ARG10.7850.87720.775-12.152-12.1520.0000.0000.0000.000
130A256ASP-1-0.855-0.92121.33612.41412.4140.0000.0000.0000.000
131A257ILE00.0180.01615.2300.1380.1380.0000.0000.0000.000
132A258LYS10.9050.95718.206-13.168-13.1680.0000.0000.0000.000
133A259PRO00.0620.04116.6840.3260.3260.0000.0000.0000.000
134A260GLU-1-0.925-0.97717.71814.20414.2040.0000.0000.0000.000
135A261ASN0-0.115-0.04719.637-0.632-0.6320.0000.0000.0000.000
136A262LEU0-0.034-0.00913.2730.6120.6120.0000.0000.0000.000
137A263LEU0-0.026-0.02616.363-0.662-0.6620.0000.0000.0000.000
138A264LEU00.0130.01912.7011.5031.5030.0000.0000.0000.000
139A265GLY00.005-0.00714.402-1.742-1.7420.0000.0000.0000.000
140A266SER0-0.002-0.01315.8860.2030.2030.0000.0000.0000.000
141A267ALA0-0.042-0.01012.256-0.520-0.5200.0000.0000.0000.000
142A268GLY0-0.007-0.00711.7312.0072.0070.0000.0000.0000.000
143A269GLU-1-0.835-0.9209.96025.38725.3870.0000.0000.0000.000
144A270LEU00.0030.0059.819-3.699-3.6990.0000.0000.0000.000
145A271LYS10.7560.86611.669-20.574-20.5740.0000.0000.0000.000
146A272ILE00.0210.01613.682-0.980-0.9800.0000.0000.0000.000
147A273ALA00.0120.00216.522-0.690-0.6900.0000.0000.0000.000
148A274ASP-1-0.866-0.94320.27112.34812.3480.0000.0000.0000.000
149A275PHE00.0350.02119.1150.2090.2090.0000.0000.0000.000
150A276GLY00.0580.03124.260-0.414-0.4140.0000.0000.0000.000
151A277TRP0-0.046-0.04025.955-0.704-0.7040.0000.0000.0000.000
152A278SER00.0020.03423.7350.1580.1580.0000.0000.0000.000
153A279VAL0-0.030-0.00825.582-0.544-0.5440.0000.0000.0000.000
154A280HIS00.005-0.01125.7260.0780.0780.0000.0000.0000.000
155A281ALA0-0.020-0.01027.3900.0460.0460.0000.0000.0000.000
156A282PRO00.0350.02226.779-0.059-0.0590.0000.0000.0000.000
157A283SER00.0360.01728.277-0.122-0.1220.0000.0000.0000.000
158A284SER00.0280.02831.286-0.016-0.0160.0000.0000.0000.000
159A285ARG10.8730.93132.263-8.716-8.7160.0000.0000.0000.000
160A286ARG10.8650.92631.806-9.698-9.6980.0000.0000.0000.000
161A287THR00.0650.04230.7690.2230.2230.0000.0000.0000.000
162A288THR0-0.089-0.05932.168-0.355-0.3550.0000.0000.0000.000
163A289LEU00.0870.05530.5510.2700.2700.0000.0000.0000.000
164A290CYS00.009-0.01830.057-0.358-0.3580.0000.0000.0000.000
165A291GLY0-0.0220.01228.9570.3250.3250.0000.0000.0000.000
166A292THR00.0370.01924.803-0.285-0.2850.0000.0000.0000.000
167A293LEU0-0.014-0.00827.325-0.034-0.0340.0000.0000.0000.000
168A294ASP-1-0.831-0.92222.83712.32912.3290.0000.0000.0000.000
169A295TYR0-0.048-0.05518.4380.0370.0370.0000.0000.0000.000
170A296LEU0-0.055-0.03221.3000.2960.2960.0000.0000.0000.000
171A297PRO00.0210.01321.445-0.162-0.1620.0000.0000.0000.000
172A298PRO00.0410.01423.714-0.419-0.4190.0000.0000.0000.000
173A299GLU-1-0.804-0.90823.98511.63311.6330.0000.0000.0000.000
174A300MET0-0.030-0.00225.391-0.148-0.1480.0000.0000.0000.000
175A301ILE00.0010.01027.614-0.399-0.3990.0000.0000.0000.000
176A302GLU-1-0.858-0.90730.1719.1369.1360.0000.0000.0000.000
177A303GLY0-0.067-0.02332.019-0.243-0.2430.0000.0000.0000.000
178A304ARG10.8400.90128.621-9.780-9.7800.0000.0000.0000.000
179A305MET0-0.054-0.02230.5120.2210.2210.0000.0000.0000.000
180A306HIS00.0280.01525.5290.1300.1300.0000.0000.0000.000
181A307ASP-1-0.826-0.93224.04511.96111.9610.0000.0000.0000.000
182A308GLU-1-0.915-0.97619.90314.02514.0250.0000.0000.0000.000
183A309LYS10.8650.94418.504-13.559-13.5590.0000.0000.0000.000
184A310VAL0-0.029-0.01719.2040.4200.4200.0000.0000.0000.000
185A311ASP-1-0.727-0.88716.61415.62615.6260.0000.0000.0000.000
186A312LEU0-0.016-0.01013.3551.1861.1860.0000.0000.0000.000
187A313TRP00.0120.02515.3140.4570.4570.0000.0000.0000.000
188A314SER0-0.023-0.02517.1430.1210.1210.0000.0000.0000.000
189A315LEU0-0.0020.0109.9290.3370.3370.0000.0000.0000.000
190A316GLY00.0270.01312.3051.3511.3510.0000.0000.0000.000
191A317VAL0-0.050-0.02914.1700.2510.2510.0000.0000.0000.000
192A318LEU00.0140.00012.752-0.130-0.1300.0000.0000.0000.000
193A319CYS0-0.026-0.0029.7260.8780.8780.0000.0000.0000.000
194A320TYR0-0.012-0.02311.5910.3460.3460.0000.0000.0000.000
195A321GLU-1-0.800-0.88714.69715.97015.9700.0000.0000.0000.000
196A322PHE0-0.018-0.0169.682-0.257-0.2570.0000.0000.0000.000
197A323LEU00.0280.0318.8840.1960.1960.0000.0000.0000.000
198A324VAL0-0.066-0.03812.854-0.873-0.8730.0000.0000.0000.000
199A325GLY0-0.027-0.00916.535-0.776-0.7760.0000.0000.0000.000
200A326LYS10.9220.97018.091-13.053-13.0530.0000.0000.0000.000
201A327PRO00.0210.01019.3770.5160.5160.0000.0000.0000.000
202A328PRO0-0.0040.00218.154-0.536-0.5360.0000.0000.0000.000
203A329PHE0-0.034-0.03520.868-0.506-0.5060.0000.0000.0000.000
204A330GLU-1-0.899-0.93423.87211.83011.8300.0000.0000.0000.000
205A331ALA0-0.034-0.02225.604-0.239-0.2390.0000.0000.0000.000
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