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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: P54ZX

Calculation Name: 2FSZ-A-Xray11

Preferred Name: Estrogen receptor beta

Target Type: SINGLE PROTEIN

Ligand Name: 4-hydroxytamoxifen

ligand 3-letter code: OHT

PDB ID: 2FSZ

Chain ID: A

ChEMBL ID: CHEMBL242

UniProt ID: Q92731

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.2017021
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 235
LigandCharge OHT=1
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2989750.807023
FMO2-HF: Nuclear repulsion 2892996.649107
FMO2-HF: Total energy -96754.157916
FMO2-MP2: Total energy -97025.891427


3D Structure
Snapshot
 
Ligand structure

OHT

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-244.244-209.77291.122-40.441-85.1560.194


Interactive mode: IFIE and PIEDA for fragment #235(A:101:OHT)


Summations of interaction energy for fragment #235(A:101:OHT)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-244.244-209.77291.122-40.441-85.156-0.194
Interaction energy analysis for fragmet #235(A:101:OHT)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.803 / q_NPA : 0.857
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A264SER10.8530.91328.5019.7689.7680.0000.0000.0000.000
2A265PRO00.1480.07026.210-0.218-0.2180.0000.0000.0000.000
3A266GLU-1-0.902-0.93725.529-9.077-9.0770.0000.0000.0000.000
4A267GLN00.0180.00225.923-0.342-0.3420.0000.0000.0000.000
5A268LEU00.0260.02321.488-0.216-0.2160.0000.0000.0000.000
6A269VAL00.0130.00221.212-0.443-0.4430.0000.0000.0000.000
7A270LEU00.019-0.01520.762-0.386-0.3860.0000.0000.0000.000
8A271THR00.021-0.00521.084-0.157-0.1570.0000.0000.0000.000
9A272LEU0-0.030-0.02217.145-0.542-0.5420.0000.0000.0000.000
10A273LEU0-0.091-0.02116.495-0.511-0.5110.0000.0000.0000.000
11A274GLU-1-0.935-0.96716.642-11.994-11.9940.0000.0000.0000.000
12A275ALA0-0.034-0.00916.369-0.258-0.2580.0000.0000.0000.000
13A276GLU-1-0.858-0.90712.147-17.714-17.7140.0000.0000.0000.000
14A277PRO0-0.033-0.0158.8130.1040.1040.0000.0000.0000.000
15A278PRO0-0.0070.00410.5970.6300.6300.0000.0000.0000.000
16A279HIS00.019-0.0028.175-1.393-1.3930.0000.0000.0000.000
17A280VAL0-0.015-0.0055.9610.6300.6300.0000.0000.0000.000
18A281LEU0-0.0030.0077.6320.1210.1210.0000.0000.0000.000
19A282ILE0-0.056-0.0416.203-1.062-1.0620.0000.0000.0000.000
20A283SER00.0260.0159.3450.8370.8370.0000.0000.0000.000
21A284ARG10.8970.94811.32813.87813.8780.0000.0000.0000.000
22A285PRO0-0.038-0.01711.9660.3380.3380.0000.0000.0000.000
23A286SER00.0160.00014.9580.6870.6870.0000.0000.0000.000
24A287ALA0-0.0160.00018.0590.3800.3800.0000.0000.0000.000
25A288PRO00.0010.01316.091-0.514-0.5140.0000.0000.0000.000
26A289PHE00.0160.00810.012-0.430-0.4300.0000.0000.0000.000
27A290THR0-0.043-0.00511.6440.7470.7470.0000.0000.0000.000
28A291GLU-1-0.788-0.8806.967-20.058-20.0580.0000.0000.0000.000
29A292ALA00.011-0.0197.443-1.691-1.6910.0000.0000.0000.000
30A293SER00.0840.0288.824-2.052-2.0520.0000.0000.0000.000
31A294MET00.0480.0195.187-1.680-1.6800.0000.0000.0000.000
32A295MET00.0210.0151.949-2.698-3.4106.454-1.358-4.3840.009
33A296MET0-0.048-0.0114.395-5.615-5.360-0.001-0.022-0.2330.000
34A297SER0-0.033-0.0306.768-2.002-2.0020.0000.0000.0000.000
35A298LEU00.0320.0142.147-5.014-3.3714.980-1.241-5.3820.001
36A299THR00.0330.0212.046-12.766-8.9115.985-3.384-6.456-0.027
37A300LYS10.9150.9763.18822.13821.8680.0400.889-0.658-0.001
38A301LEU0-0.056-0.0342.067-0.6830.3662.180-0.807-2.4230.002
39A302ALA00.0860.0482.433-3.990-0.4772.122-1.544-4.0900.010
40A303ASP-1-0.791-0.8901.837-125.699-121.50611.135-7.953-7.375-0.104
41A304LYS10.8720.9384.41835.86236.049-0.001-0.041-0.1460.000
42A305GLU-1-0.797-0.8891.702-61.837-65.87818.972-8.693-6.239-0.102
43A306LEU0-0.010-0.0043.1703.1214.0830.079-0.191-0.850-0.001
44A307VAL0-0.042-0.0127.2543.7383.7380.0000.0000.0000.000
45A308HIS0-0.030-0.0248.2023.4243.4240.0000.0000.0000.000
46A309MET0-0.0250.0067.2572.4482.4480.0000.0000.0000.000
47A310ILE00.0360.0319.5552.5822.5820.0000.0000.0000.000
48A311SER0-0.029-0.03412.3222.0032.0030.0000.0000.0000.000
49A312TRP00.0020.00611.8291.0251.0250.0000.0000.0000.000
50A313ALA00.0510.00213.8681.2581.2580.0000.0000.0000.000
51A314LYS10.9020.95515.53119.00919.0090.0000.0000.0000.000
52A315LYS10.9290.97316.24516.59416.5940.0000.0000.0000.000
53A316ILE0-0.0090.02115.1770.8690.8690.0000.0000.0000.000
54A317PRO00.000-0.01119.3930.0450.0450.0000.0000.0000.000
55A318GLY00.0570.02723.159-0.071-0.0710.0000.0000.0000.000
56A319PHE00.0200.01915.160-0.039-0.0390.0000.0000.0000.000
57A320VAL0-0.033-0.02419.926-0.182-0.1820.0000.0000.0000.000
58A321GLU-1-0.982-0.98421.437-10.995-10.9950.0000.0000.0000.000
59A322LEU0-0.087-0.03019.6130.4990.4990.0000.0000.0000.000
60A323SER00.0320.01421.147-0.576-0.5760.0000.0000.0000.000
61A324LEU00.022-0.01217.103-0.474-0.4740.0000.0000.0000.000
62A325PHE00.0280.01316.762-1.195-1.1950.0000.0000.0000.000
63A326ASP-1-0.786-0.88116.365-15.329-15.3290.0000.0000.0000.000
64A327GLN0-0.095-0.05915.700-1.519-1.5190.0000.0000.0000.000
65A328VAL00.0200.00211.357-1.281-1.2810.0000.0000.0000.000
66A329ARG10.8850.94011.65513.57913.5790.0000.0000.0000.000
67A330LEU0-0.0150.00012.987-0.843-0.8430.0000.0000.0000.000
68A331LEU0-0.003-0.0299.690-1.001-1.0010.0000.0000.0000.000
69A332GLU-1-0.986-1.0018.209-31.298-31.2980.0000.0000.0000.000
70A333SER00.0130.0108.729-1.437-1.4370.0000.0000.0000.000
71A334CYS0-0.0790.00910.887-0.179-0.1790.0000.0000.0000.000
72A335TRP00.0490.0081.988-8.901-7.2812.907-1.301-3.226-0.013
73A336MET00.0110.0192.699-5.479-3.2463.448-1.146-4.5330.004
74A337GLU-1-0.842-0.9385.312-19.749-19.7490.0000.0000.0000.000
75A338VAL0-0.013-0.0026.7821.5481.5480.0000.0000.0000.000
76A339LEU0-0.021-0.0082.737-2.1471.2651.197-1.152-3.4570.010
77A340MET0-0.013-0.0042.4110.0822.8861.522-1.015-3.312-0.008
78A341MET00.0000.0153.7042.5002.5910.0020.034-0.1260.000
79A342GLY0-0.004-0.0055.5131.4061.4060.0000.0000.0000.000
80A343LEU0-0.034-0.0122.410-1.7460.8141.503-1.023-3.0410.009
81A344MET0-0.023-0.0134.4750.9131.0470.000-0.026-0.1080.000
82A345TRP0-0.018-0.0027.4731.1281.1280.0000.0000.0000.000
83A346ARG10.8140.9151.89117.01313.6438.077-2.070-2.6370.021
84A347SER00.001-0.0127.4750.2950.2950.0000.0000.0000.000
85A348ILE0-0.0370.00010.1630.4690.4690.0000.0000.0000.000
86A349ASP-1-0.918-0.95912.802-11.025-11.0250.0000.0000.0000.000
87A350HIS0-0.050-0.02812.8920.4300.4300.0000.0000.0000.000
88A351PRO00.013-0.00313.068-0.381-0.3810.0000.0000.0000.000
89A352GLY0-0.015-0.00312.5220.1990.1990.0000.0000.0000.000
90A353LYS10.8970.94810.61312.08312.0830.0000.0000.0000.000
91A354LEU00.0220.0133.904-0.289-0.0670.001-0.021-0.2020.000
92A355ILE0-0.0200.0027.976-0.347-0.3470.0000.0000.0000.000
93A356PHE00.0240.0062.048-4.528-1.4953.272-1.386-4.9190.012
94A357ALA00.0270.0004.808-2.430-2.311-0.001-0.007-0.1110.000
95A358PRO0-0.025-0.0177.6210.6860.6860.0000.0000.0000.000
96A359ASP-1-0.854-0.93011.019-14.218-14.2180.0000.0000.0000.000
97A360LEU0-0.095-0.0366.216-0.081-0.0810.0000.0000.0000.000
98A361VAL0-0.007-0.0018.265-0.347-0.3470.0000.0000.0000.000
99A362LEU0-0.026-0.0126.0230.0240.0240.0000.0000.0000.000
100A363ASP-1-0.858-0.9269.458-12.599-12.5990.0000.0000.0000.000
101A364ARG10.8760.9199.06512.19512.1950.0000.0000.0000.000
102A365ASP-1-0.930-1.0019.944-12.435-12.4350.0000.0000.0000.000
103A366GLU-1-0.760-0.88610.429-14.448-14.4480.0000.0000.0000.000
104A367GLY00.047-0.0017.281-0.686-0.6860.0000.0000.0000.000
105A368LYS10.8440.9307.45612.30912.3090.0000.0000.0000.000
106A369CYS0-0.082-0.0329.0280.4560.4560.0000.0000.0000.000
107A370VAL0-0.090-0.0384.044-0.793-0.5620.000-0.026-0.2060.000
108A371GLU-1-0.875-0.9536.296-15.259-15.2590.0000.0000.0000.000
109A372GLY00.0340.0246.794-1.353-1.3530.0000.0000.0000.000
110A373ILE0-0.0430.0052.249-0.384-0.4593.005-0.609-2.3210.001
111A374LEU00.0290.0095.1260.2780.377-0.001-0.007-0.0920.000
112A375GLU-1-0.896-0.9388.138-15.186-15.1860.0000.0000.0000.000
113A376ILE00.0230.0132.528-1.894-0.1660.844-0.623-1.9500.004
114A377PHE0-0.024-0.0282.219-1.490-0.3310.978-0.345-1.7920.000
115A378ASP-1-0.783-0.8835.230-13.200-13.165-0.001-0.001-0.0330.000
116A379MET0-0.048-0.0016.7550.2060.2060.0000.0000.0000.000
117A380LEU00.0190.0062.2081.363-0.9594.814-0.521-1.971-0.002
118A381LEU00.0200.0216.3880.6220.6220.0000.0000.0000.000
119A382ALA00.0340.0258.9230.5970.5970.0000.0000.0000.000
120A383THR00.003-0.0019.7100.5290.5290.0000.0000.0000.000
121A384THR0-0.022-0.0248.7900.2920.2920.0000.0000.0000.000
122A385SER0-0.094-0.04311.4400.5280.5280.0000.0000.0000.000
123A386ARG10.9570.99914.01811.08911.0890.0000.0000.0000.000
124A387PHE00.021-0.02710.9110.4770.4770.0000.0000.0000.000
125A388ARG10.9110.97113.63011.81211.8120.0000.0000.0000.000
126A389GLU-1-0.903-0.95916.796-10.172-10.1720.0000.0000.0000.000
127A390LEU0-0.086-0.02518.1960.4060.4060.0000.0000.0000.000
128A391LYS10.9630.97919.2069.3059.3050.0000.0000.0000.000
129A392LEU00.0020.02313.3540.2060.2060.0000.0000.0000.000
130A393GLN0-0.032-0.03717.5150.1480.1480.0000.0000.0000.000
131A394HIS00.0740.03414.217-0.224-0.2240.0000.0000.0000.000
132A395LYS10.9720.97016.38910.07410.0740.0000.0000.0000.000
133A396GLU-1-0.728-0.80817.977-10.839-10.8390.0000.0000.0000.000
134A397TYR00.0550.0369.565-0.745-0.7450.0000.0000.0000.000
135A398LEU0-0.036-0.00113.686-0.574-0.5740.0000.0000.0000.000
136A399CYS0-0.051-0.02015.386-0.334-0.3340.0000.0000.0000.000
137A400VAL00.0720.01612.358-0.295-0.2950.0000.0000.0000.000
138A401LYS10.7940.8719.34117.57517.5750.0000.0000.0000.000
139A402ALA00.0360.01812.339-0.810-0.8100.0000.0000.0000.000
140A403MET0-0.043-0.01315.1360.0430.0430.0000.0000.0000.000
141A404ILE0-0.018-0.00410.0920.0390.0390.0000.0000.0000.000
142A405LEU0-0.033-0.03213.218-0.657-0.6570.0000.0000.0000.000
143A406LEU00.001-0.01814.218-0.028-0.0280.0000.0000.0000.000
144A407ASN0-0.033-0.01316.8400.9530.9530.0000.0000.0000.000
145A408SER00.0060.00413.8010.7970.7970.0000.0000.0000.000
146A409SER0-0.022-0.00515.692-0.254-0.2540.0000.0000.0000.000
147A410MET00.0220.00718.0160.4480.4480.0000.0000.0000.000
148A411TYR00.0610.07817.214-0.072-0.0720.0000.0000.0000.000
149A412PRO0-0.037-0.06118.0610.6930.6930.0000.0000.0000.000
150A413LEU0-0.0070.01321.3600.3220.3220.0000.0000.0000.000
151A414VAL0-0.0140.00023.5960.4400.4400.0000.0000.0000.000
152A415THR00.0110.00424.8730.4580.4580.0000.0000.0000.000
153A416ALA00.0740.04323.6010.3220.3220.0000.0000.0000.000
154A417THR0-0.056-0.04025.7400.1850.1850.0000.0000.0000.000
155A418GLN0-0.139-0.08028.5180.6620.6620.0000.0000.0000.000
156A419ASP-1-0.906-0.94127.871-10.570-10.5700.0000.0000.0000.000
157A420ALA00.0740.03428.1430.3170.3170.0000.0000.0000.000
158A421ASP-1-0.795-0.86022.930-13.104-13.1040.0000.0000.0000.000
159A422SER00.0530.03426.4800.1830.1830.0000.0000.0000.000
160A423SER00.2030.08924.7460.0830.0830.0000.0000.0000.000
161A424ARG10.7090.87126.7049.0869.0860.0000.0000.0000.000
162A425LYS10.9160.90625.80011.13611.1360.0000.0000.0000.000
163A426LEU00.0930.05621.9230.0300.0300.0000.0000.0000.000
164A427ALA00.0740.04424.156-0.110-0.1100.0000.0000.0000.000
165A428HIS0-0.049-0.01625.9510.1540.1540.0000.0000.0000.000
166A429LEU00.000-0.01221.7470.1650.1650.0000.0000.0000.000
167A430LEU00.0070.00419.851-0.065-0.0650.0000.0000.0000.000
168A431ASN00.006-0.01922.661-0.096-0.0960.0000.0000.0000.000
169A432ALA00.0080.01624.9250.2730.2730.0000.0000.0000.000
170A433VAL0-0.001-0.01318.5920.2250.2250.0000.0000.0000.000
171A434THR0-0.0060.00021.8830.0150.0150.0000.0000.0000.000
172A435ASP-1-0.939-0.96322.993-9.196-9.1960.0000.0000.0000.000
173A436ALA0-0.074-0.04622.5190.2720.2720.0000.0000.0000.000
174A437LEU00.0170.01219.3400.1300.1300.0000.0000.0000.000
175A438VAL00.0070.00422.3490.2310.2310.0000.0000.0000.000
176A439TRP00.0600.01225.3200.0940.0940.0000.0000.0000.000
177A440VAL0-0.066-0.03821.5030.2430.2430.0000.0000.0000.000
178A441ILE0-0.019-0.01722.1450.2280.2280.0000.0000.0000.000
179A442ALA00.0130.01225.2440.2590.2590.0000.0000.0000.000
180A443LYS10.7970.92424.5669.8229.8220.0000.0000.0000.000
181A444SER0-0.031-0.01626.2700.1420.1420.0000.0000.0000.000
182A445GLY00.0250.01628.5640.1440.1440.0000.0000.0000.000
183A446ILE0-0.057-0.00427.4720.1830.1830.0000.0000.0000.000
184A447SER00.0420.01031.6010.0000.0000.0000.0000.0000.000
185A448SER00.0990.01831.952-0.195-0.1950.0000.0000.0000.000
186A449GLN00.0450.02131.700-0.365-0.3650.0000.0000.0000.000
187A450GLN00.0800.03029.500-0.101-0.1010.0000.0000.0000.000
188A451GLN0-0.022-0.01527.690-0.408-0.4080.0000.0000.0000.000
189A452SER0-0.002-0.00126.821-0.288-0.2880.0000.0000.0000.000
190A453MET0-0.064-0.01926.710-0.289-0.2890.0000.0000.0000.000
191A454ARG10.7300.82220.6319.9039.9030.0000.0000.0000.000
192A455LEU00.0550.03522.052-0.399-0.3990.0000.0000.0000.000
193A456ALA00.0220.01221.894-0.407-0.4070.0000.0000.0000.000
194A457ASN00.015-0.01121.239-0.456-0.4560.0000.0000.0000.000
195A458LEU0-0.030-0.00917.649-0.371-0.3710.0000.0000.0000.000
196A459LEU00.0360.01217.063-0.590-0.5900.0000.0000.0000.000
197A460MET0-0.047-0.01218.305-0.373-0.3730.0000.0000.0000.000
198A461LEU0-0.018-0.01914.602-0.267-0.2670.0000.0000.0000.000
199A462LEU00.0050.00813.602-0.740-0.7400.0000.0000.0000.000
200A463SER00.0020.00413.680-0.974-0.9740.0000.0000.0000.000
201A464HIS00.0010.00612.169-0.657-0.6570.0000.0000.0000.000
202A465VAL00.0120.0168.655-0.740-0.7400.0000.0000.0000.000
203A466ARG10.8960.9459.22016.67216.6720.0000.0000.0000.000
204A467HIS0-0.017-0.01110.539-1.124-1.1240.0000.0000.0000.000
205A468ALA00.0480.0165.920-0.593-0.5930.0000.0000.0000.000
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