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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: P593Z

Calculation Name: 4JZ5-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4JZ5

Chain ID: A

ChEMBL ID:

UniProt ID: B6D7J9

Base Structure: X-ray

Registration Date: 2018-02-14

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 207
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2504496.239477
FMO2-HF: Nuclear repulsion 2422796.26247
FMO2-HF: Total energy -81699.977006
FMO2-MP2: Total energy -81937.64816


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:-4:ACE)


Summations of interaction energy for fragment #1(A:-4:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
2.3493.048-0.012-0.345-0.3430
Interaction energy analysis for fragmet #1(A:-4:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.026 / q_NPA : 0.003
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A-2SER00.0060.0063.8361.0691.768-0.012-0.345-0.3430.000
4A-1HIS00.0480.0247.288-0.074-0.0740.0000.0000.0000.000
5A0MET0-0.035-0.00210.3280.0940.0940.0000.0000.0000.000
6A1MET0-0.049-0.02410.259-0.132-0.1320.0000.0000.0000.000
7A2VAL00.0340.0208.8440.0580.0580.0000.0000.0000.000
8A3LEU00.0310.03111.3920.0620.0620.0000.0000.0000.000
9A4VAL00.0080.00514.3990.0210.0210.0000.0000.0000.000
10A5LEU0-0.0080.00116.7490.0050.0050.0000.0000.0000.000
11A6ASP-1-0.796-0.88720.440-0.120-0.1200.0000.0000.0000.000
12A7ILE00.0170.00823.4970.0020.0020.0000.0000.0000.000
13A8SER00.0290.00726.5960.0060.0060.0000.0000.0000.000
14A9LYS10.9180.96330.1400.0450.0450.0000.0000.0000.000
15A10TRP0-0.034-0.03231.8500.0050.0050.0000.0000.0000.000
16A11GLN00.0060.00527.6810.0010.0010.0000.0000.0000.000
17A12PRO00.0020.00230.8000.0020.0020.0000.0000.0000.000
18A13THR0-0.012-0.00831.5330.0050.0050.0000.0000.0000.000
19A14VAL00.0350.02325.424-0.005-0.0050.0000.0000.0000.000
20A15ASN0-0.0120.00026.4710.0090.0090.0000.0000.0000.000
21A16TYR00.037-0.03424.121-0.002-0.0020.0000.0000.0000.000
22A17SER0-0.0100.00122.345-0.004-0.0040.0000.0000.0000.000
23A18GLY0-0.015-0.01121.528-0.001-0.0010.0000.0000.0000.000
24A19LEU0-0.024-0.02019.737-0.011-0.0110.0000.0000.0000.000
25A20LYS10.8490.91916.948-0.004-0.0040.0000.0000.0000.000
26A21GLU-1-0.980-0.96215.532-0.107-0.1070.0000.0000.0000.000
27A22ASP-1-0.864-0.93514.117-0.225-0.2250.0000.0000.0000.000
28A23VAL0-0.095-0.04514.124-0.049-0.0490.0000.0000.0000.000
29A24GLY0-0.0010.00012.5490.0210.0210.0000.0000.0000.000
30A25PHE00.001-0.02213.3770.0290.0290.0000.0000.0000.000
31A26VAL00.0000.00116.325-0.017-0.0170.0000.0000.0000.000
32A27VAL0-0.0020.01220.0350.0140.0140.0000.0000.0000.000
33A28ILE0-0.008-0.00522.595-0.002-0.0020.0000.0000.0000.000
34A29ARG10.8590.93426.1650.0580.0580.0000.0000.0000.000
35A30SER00.004-0.01029.4220.0060.0060.0000.0000.0000.000
36A31SER0-0.001-0.00931.4770.0040.0040.0000.0000.0000.000
37A32ASN0-0.0070.01834.098-0.006-0.0060.0000.0000.0000.000
38A33GLY00.0520.02136.8300.0030.0030.0000.0000.0000.000
39A34THR00.033-0.01538.2890.0000.0000.0000.0000.0000.000
40A35GLN0-0.0480.00940.8730.0000.0000.0000.0000.0000.000
41A36LYS10.8400.89837.8980.0390.0390.0000.0000.0000.000
42A37TYR00.0330.00535.347-0.002-0.0020.0000.0000.0000.000
43A38ASP-1-0.763-0.87532.993-0.049-0.0490.0000.0000.0000.000
44A39GLU-1-0.771-0.89035.051-0.036-0.0360.0000.0000.0000.000
45A40ARG10.8580.93132.0960.0390.0390.0000.0000.0000.000
46A41LEU00.0150.02829.967-0.001-0.0010.0000.0000.0000.000
47A42GLU-1-0.881-0.95230.515-0.018-0.0180.0000.0000.0000.000
48A43GLN0-0.088-0.03731.0450.0040.0040.0000.0000.0000.000
49A44HIS00.0410.03827.1600.0030.0030.0000.0000.0000.000
50A45ALA00.0360.02526.721-0.001-0.0010.0000.0000.0000.000
51A46LYS10.9810.99126.7790.0190.0190.0000.0000.0000.000
52A47GLY0-0.044-0.01827.3630.0040.0040.0000.0000.0000.000
53A48LEU0-0.020-0.03221.712-0.001-0.0010.0000.0000.0000.000
54A49ASP-1-0.869-0.93422.7500.0040.0040.0000.0000.0000.000
55A50LYS10.9090.97524.2530.0280.0280.0000.0000.0000.000
56A51VAL0-0.059-0.03321.2100.0050.0050.0000.0000.0000.000
57A52GLY00.0550.03120.1000.0020.0020.0000.0000.0000.000
58A53MET0-0.128-0.04817.1020.0010.0010.0000.0000.0000.000
59A54PRO00.0090.01214.9400.0040.0040.0000.0000.0000.000
60A55PHE00.023-0.01418.216-0.019-0.0190.0000.0000.0000.000
61A56GLY00.0720.04420.6100.0110.0110.0000.0000.0000.000
62A57LEU0-0.043-0.01722.612-0.002-0.0020.0000.0000.0000.000
63A58TYR00.0790.02125.8660.0010.0010.0000.0000.0000.000
64A59HIS10.7360.86827.6190.0440.0440.0000.0000.0000.000
65A60TYR0-0.048-0.04831.315-0.004-0.0040.0000.0000.0000.000
66A61ALA0-0.036-0.02533.3040.0050.0050.0000.0000.0000.000
67A62LEU0-0.076-0.04735.533-0.001-0.0010.0000.0000.0000.000
68A63PHE00.0030.01735.2290.0010.0010.0000.0000.0000.000
69A64GLU-1-0.914-0.98540.526-0.027-0.0270.0000.0000.0000.000
70A65GLY00.0170.01742.2780.0000.0000.0000.0000.0000.000
71A66GLY00.0110.00443.2310.0010.0010.0000.0000.0000.000
72A67GLN00.027-0.00942.9780.0000.0000.0000.0000.0000.000
73A68ASP-1-0.791-0.88343.095-0.027-0.0270.0000.0000.0000.000
74A69THR0-0.029-0.02237.865-0.001-0.0010.0000.0000.0000.000
75A70ILE00.0090.01138.339-0.001-0.0010.0000.0000.0000.000
76A71ASN00.0140.00539.1050.0010.0010.0000.0000.0000.000
77A72GLU-1-0.713-0.86137.109-0.037-0.0370.0000.0000.0000.000
78A73ALA0-0.0050.00134.790-0.001-0.0010.0000.0000.0000.000
79A74ASN00.0420.00334.8980.0010.0010.0000.0000.0000.000
80A75MET0-0.0520.01036.4680.0020.0020.0000.0000.0000.000
81A76LEU0-0.0060.00828.9400.0000.0000.0000.0000.0000.000
82A77VAL00.0260.01131.9620.0010.0010.0000.0000.0000.000
83A78SER0-0.031-0.02333.3970.0030.0030.0000.0000.0000.000
84A79ALA0-0.022-0.01531.9830.0020.0020.0000.0000.0000.000
85A80TYR00.0330.01526.1580.0010.0010.0000.0000.0000.000
86A81LYS10.9730.98030.4930.0100.0100.0000.0000.0000.000
87A82LYS10.9150.96933.1750.0200.0200.0000.0000.0000.000
88A83CYS0-0.037-0.01528.398-0.001-0.0010.0000.0000.0000.000
89A84ARG10.8510.90228.176-0.007-0.0070.0000.0000.0000.000
90A85GLN0-0.070-0.01830.6210.0030.0030.0000.0000.0000.000
91A86LEU0-0.111-0.06531.4650.0010.0010.0000.0000.0000.000
92A87GLY00.0060.01330.1360.0000.0000.0000.0000.0000.000
93A88ALA00.0150.02726.2940.0020.0020.0000.0000.0000.000
94A89GLU-1-0.787-0.88323.5300.0130.0130.0000.0000.0000.000
95A90PRO0-0.084-0.03022.798-0.003-0.0030.0000.0000.0000.000
96A91THR00.030-0.01218.5720.0050.0050.0000.0000.0000.000
97A92PHE0-0.052-0.02718.387-0.004-0.0040.0000.0000.0000.000
98A93LEU0-0.041-0.00622.002-0.002-0.0020.0000.0000.0000.000
99A94PHE00.0270.01420.137-0.004-0.0040.0000.0000.0000.000
100A95LEU0-0.0110.00326.2050.0050.0050.0000.0000.0000.000
101A96ASH0-0.104-0.09028.421-0.007-0.0070.0000.0000.0000.000
102A97TYR00.048-0.00429.8740.0060.0060.0000.0000.0000.000
103A98GLU-1-0.813-0.88331.489-0.081-0.0810.0000.0000.0000.000
104A99GLU-1-0.861-0.90133.703-0.047-0.0470.0000.0000.0000.000
105A100VAL0-0.016-0.01637.5020.0010.0010.0000.0000.0000.000
106A101LYS10.9300.97140.0110.0380.0380.0000.0000.0000.000
107A102LEU0-0.058-0.01340.0310.0020.0020.0000.0000.0000.000
108A103LYS10.9490.97743.5270.0260.0260.0000.0000.0000.000
109A104SER0-0.030-0.01145.9870.0010.0010.0000.0000.0000.000
110A105GLY00.0540.03243.9070.0000.0000.0000.0000.0000.000
111A106ASN00.0120.00138.815-0.002-0.0020.0000.0000.0000.000
112A107VAL00.0630.02235.2180.0000.0000.0000.0000.0000.000
113A108VAL00.0260.02633.776-0.001-0.0010.0000.0000.0000.000
114A109ASN00.0240.00235.086-0.001-0.0010.0000.0000.0000.000
115A110GLU-1-0.826-0.90237.202-0.027-0.0270.0000.0000.0000.000
116A111CYS0-0.025-0.01232.262-0.001-0.0010.0000.0000.0000.000
117A112GLN0-0.021-0.00930.430-0.003-0.0030.0000.0000.0000.000
118A113ARG10.8510.92033.7540.0260.0260.0000.0000.0000.000
119A114PHE0-0.0040.00331.0240.0020.0020.0000.0000.0000.000
120A115ILE00.018-0.00828.4170.0020.0020.0000.0000.0000.000
121A116ASP-1-0.863-0.92330.956-0.024-0.0240.0000.0000.0000.000
122A117HIS0-0.047-0.02532.8200.0040.0040.0000.0000.0000.000
123A118VAL00.010-0.00429.5740.0030.0030.0000.0000.0000.000
124A119LYS10.8450.91925.4650.0290.0290.0000.0000.0000.000
125A120GLY0-0.0080.00229.8570.0040.0040.0000.0000.0000.000
126A121GLN0-0.072-0.03132.9720.0040.0040.0000.0000.0000.000
127A122THR0-0.059-0.03729.1470.0020.0020.0000.0000.0000.000
128A123GLY00.0140.02028.2920.0040.0040.0000.0000.0000.000
129A124VAL0-0.031-0.00423.6990.0030.0030.0000.0000.0000.000
130A125LYS10.9250.96118.8820.0150.0150.0000.0000.0000.000
131A126VAL00.013-0.00623.561-0.003-0.0030.0000.0000.0000.000
132A127GLY00.0110.01523.148-0.001-0.0010.0000.0000.0000.000
133A128LEU0-0.040-0.02124.0890.0080.0080.0000.0000.0000.000
134A129TYR0-0.023-0.03324.526-0.007-0.0070.0000.0000.0000.000
135A130ALA00.0160.01326.3720.0100.0100.0000.0000.0000.000
136A131GLY00.0520.03326.984-0.011-0.0110.0000.0000.0000.000
137A132ASP-1-0.759-0.85827.091-0.113-0.1130.0000.0000.0000.000
138A133SER0-0.019-0.01428.3310.0060.0060.0000.0000.0000.000
139A134PHE00.0540.03232.0020.0050.0050.0000.0000.0000.000
140A135TRP00.026-0.01424.9380.0040.0040.0000.0000.0000.000
141A136LYS10.8750.93129.7890.0980.0980.0000.0000.0000.000
142A137THR0-0.038-0.02032.0000.0050.0050.0000.0000.0000.000
143A138HIS10.8440.92934.2090.0620.0620.0000.0000.0000.000
144A139ASP-1-0.855-0.91933.512-0.049-0.0490.0000.0000.0000.000
145A140LEU00.016-0.01029.6410.0020.0020.0000.0000.0000.000
146A141ASP-1-0.841-0.89227.373-0.090-0.0900.0000.0000.0000.000
147A142LYS10.8650.93228.9800.0470.0470.0000.0000.0000.000
148A143VAL0-0.042-0.00529.2870.0050.0050.0000.0000.0000.000
149A144LYS10.9100.95627.6730.0310.0310.0000.0000.0000.000
150A145HIS00.0380.00323.4440.0050.0050.0000.0000.0000.000
151A146ASP-1-0.816-0.89821.297-0.041-0.0410.0000.0000.0000.000
152A147LEU0-0.042-0.03316.874-0.007-0.0070.0000.0000.0000.000
153A148ARG10.7960.88920.2240.1270.1270.0000.0000.0000.000
154A149TRP0-0.023-0.00720.226-0.017-0.0170.0000.0000.0000.000
155A150VAL00.0170.00521.7000.0140.0140.0000.0000.0000.000
156A151ALA00.0450.03122.767-0.018-0.0180.0000.0000.0000.000
157A152ARG10.8390.90624.6650.1320.1320.0000.0000.0000.000
158A153TYR00.0590.00724.735-0.010-0.0100.0000.0000.0000.000
159A154GLY0-0.035-0.00226.886-0.005-0.0050.0000.0000.0000.000
160A155VAL0-0.032-0.02827.8940.0070.0070.0000.0000.0000.000
161A156ASP-1-0.770-0.84127.696-0.111-0.1110.0000.0000.0000.000
162A157ASN00.016-0.00126.273-0.001-0.0010.0000.0000.0000.000
163A158GLY00.0350.01925.2810.0010.0010.0000.0000.0000.000
164A159LYS10.8870.93620.6380.1850.1850.0000.0000.0000.000
165A160PRO00.0080.00618.1180.0120.0120.0000.0000.0000.000
166A161SER00.0640.04121.2050.0120.0120.0000.0000.0000.000
167A162THR0-0.056-0.03922.967-0.010-0.0100.0000.0000.0000.000
168A163LYS10.9961.00516.9320.3160.3160.0000.0000.0000.000
169A164PRO0-0.022-0.01721.2900.0180.0180.0000.0000.0000.000
170A165SER0-0.087-0.06723.890-0.002-0.0020.0000.0000.0000.000
171A166ILE00.0060.01424.4350.0070.0070.0000.0000.0000.000
172A167PRO00.0400.00920.596-0.015-0.0150.0000.0000.0000.000
173A168TYR0-0.022-0.00915.7180.0230.0230.0000.0000.0000.000
174A169ASP-1-0.798-0.88416.285-0.188-0.1880.0000.0000.0000.000
175A170LEU0-0.054-0.03315.518-0.051-0.0510.0000.0000.0000.000
176A171TRP0-0.060-0.03017.6140.0160.0160.0000.0000.0000.000
177A172GLN00.0670.05919.413-0.013-0.0130.0000.0000.0000.000
178A173TYR00.009-0.01717.8320.0030.0030.0000.0000.0000.000
179A174THR0-0.066-0.04022.5360.0100.0100.0000.0000.0000.000
180A175SER00.0300.00124.967-0.001-0.0010.0000.0000.0000.000
181A176LYS10.8520.92427.2050.0950.0950.0000.0000.0000.000
182A177GLY00.0310.01924.375-0.003-0.0030.0000.0000.0000.000
183A178ARG10.9470.96424.4970.1210.1210.0000.0000.0000.000
184A179ILE00.0470.01521.174-0.010-0.0100.0000.0000.0000.000
185A180LYS10.9840.98523.9940.0750.0750.0000.0000.0000.000
186A181ALA0-0.024-0.00423.9140.0090.0090.0000.0000.0000.000
187A182ILE00.0130.00624.5610.0080.0080.0000.0000.0000.000
188A183ALA0-0.0050.00827.799-0.004-0.0040.0000.0000.0000.000
189A184SER0-0.027-0.01730.667-0.001-0.0010.0000.0000.0000.000
190A185PRO00.0070.01528.974-0.005-0.0050.0000.0000.0000.000
191A186VAL0-0.018-0.01024.0150.0070.0070.0000.0000.0000.000
192A187ASP-1-0.791-0.87924.459-0.118-0.1180.0000.0000.0000.000
193A188MET0-0.121-0.05119.3080.0010.0010.0000.0000.0000.000
194A189ASN00.002-0.01918.3470.0090.0090.0000.0000.0000.000
195A190THR0-0.036-0.02613.692-0.044-0.0440.0000.0000.0000.000
196A191CYS00.0110.00011.7640.0800.0800.0000.0000.0000.000
197A192SER00.0250.0298.934-0.100-0.1000.0000.0000.0000.000
198A193SER00.0660.0034.8430.4230.4230.0000.0000.0000.000
199A194ASP-1-0.908-0.9397.2560.0610.0610.0000.0000.0000.000
200A195ILE00.0230.0128.8940.1030.1030.0000.0000.0000.000
201A196LEU0-0.023-0.0128.9100.0660.0660.0000.0000.0000.000
202A197ASN0-0.034-0.0269.1680.0720.0720.0000.0000.0000.000
203A198LYS10.9821.00411.1140.1240.1240.0000.0000.0000.000
204A199LEU0-0.051-0.02414.2340.0220.0220.0000.0000.0000.000
205A200LYS10.8880.93910.2650.0490.0490.0000.0000.0000.000
206A201GLY0-0.0030.01015.4220.0190.0190.0000.0000.0000.000
207A202SER-1-0.972-0.96213.9020.1090.1090.0000.0000.0000.000