FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-25

All entries: 37426

Number of unique PDB entries: 7782

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FMODB ID: P5JGZ

Calculation Name: 4HWM-A-Xray18

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4HWM

Chain ID: A

ChEMBL ID:

UniProt ID: A6TB72

Base Structure: X-ray

Registration Date: 2018-06-04

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 217
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1196520.337725
FMO2-HF: Nuclear repulsion 1142384.566878
FMO2-HF: Total energy -54135.770848
FMO2-MP2: Total energy -54288.300137


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:20:ACE)


Summations of interaction energy for fragment #1(A:20:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.8671.72-0.013-0.396-0.444-0.001
Interaction energy analysis for fragmet #1(A:20:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.035 / q_NPA : -0.028
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A22ARG10.8220.9083.8161.9812.834-0.013-0.396-0.444-0.001
4A23TYR00.042-0.0097.120-0.005-0.0050.0000.0000.0000.000
5A24GLU-1-0.825-0.88410.291-0.450-0.4500.0000.0000.0000.000
6A25ASP-1-0.804-0.8598.535-0.934-0.9340.0000.0000.0000.000
7A26VAL0-0.0200.0089.553-0.012-0.0120.0000.0000.0000.000
8A27VAL0-0.014-0.01511.2900.1380.1380.0000.0000.0000.000
9A28LYS10.8330.90214.2540.2630.2630.0000.0000.0000.000
10A29ALA00.0020.00517.0850.0250.0250.0000.0000.0000.000
11A30PRO00.007-0.00319.2960.0160.0160.0000.0000.0000.000
12A31ALA00.0260.02322.944-0.001-0.0010.0000.0000.0000.000
13A32PRO00.0750.05323.2520.0100.0100.0000.0000.0000.000
14A33ALA00.0260.01026.3700.0060.0060.0000.0000.0000.000
15A34GLY00.0180.01330.1000.0030.0030.0000.0000.0000.000
16A35LEU00.0480.03223.5780.0060.0060.0000.0000.0000.000
17A36ALA0-0.0070.00127.6250.0000.0000.0000.0000.0000.000
18A37GLY00.002-0.00528.5560.0100.0100.0000.0000.0000.000
19A38PHE0-0.043-0.00428.921-0.008-0.0080.0000.0000.0000.000
20A39TRP0-0.0050.00027.8380.0100.0100.0000.0000.0000.000
21A40GLN00.0730.04129.767-0.004-0.0040.0000.0000.0000.000
22A41THR0-0.0050.00229.9800.0000.0000.0000.0000.0000.000
23A42LYS10.8850.93332.5950.0460.0460.0000.0000.0000.000
24A43GLY00.0460.03135.5020.0030.0030.0000.0000.0000.000
25A44PRO0-0.0090.01935.026-0.003-0.0030.0000.0000.0000.000
26A45GLN00.0300.02930.470-0.003-0.0030.0000.0000.0000.000
27A46SER0-0.0040.01931.7710.0030.0030.0000.0000.0000.000
28A47ALA00.0210.02526.5870.0040.0040.0000.0000.0000.000
29A48MET0-0.043-0.00627.9030.0010.0010.0000.0000.0000.000
30A49MET0-0.018-0.01229.7440.0030.0030.0000.0000.0000.000
31A50SER00.015-0.00331.5680.0030.0030.0000.0000.0000.000
32A51PRO00.0530.03034.487-0.004-0.0040.0000.0000.0000.000
33A52ASP-1-0.778-0.84236.650-0.021-0.0210.0000.0000.0000.000
34A53ALA0-0.051-0.00331.564-0.002-0.0020.0000.0000.0000.000
35A54ILE0-0.0060.01431.965-0.001-0.0010.0000.0000.0000.000
36A55ALA00.0420.01226.9910.0000.0000.0000.0000.0000.000
37A56SER00.0300.03627.8090.0020.0020.0000.0000.0000.000
38A57LEU00.0050.01322.031-0.004-0.0040.0000.0000.0000.000
39A58ILE0-0.038-0.01725.4710.0060.0060.0000.0000.0000.000
40A59VAL00.0400.02423.560-0.014-0.0140.0000.0000.0000.000
41A60THR0-0.037-0.03124.6900.0090.0090.0000.0000.0000.000
42A61LYS10.9390.95225.4110.1120.1120.0000.0000.0000.000
43A62GLU-1-0.773-0.86123.865-0.144-0.1440.0000.0000.0000.000
44A63GLY00.0930.05621.235-0.020-0.0200.0000.0000.0000.000
45A64ASP-1-0.846-0.87720.167-0.244-0.2440.0000.0000.0000.000
46A65THR0-0.002-0.02919.1960.0210.0210.0000.0000.0000.000
47A66PHE0-0.013-0.02121.562-0.004-0.0040.0000.0000.0000.000
48A67ASP-1-0.708-0.77121.190-0.088-0.0880.0000.0000.0000.000
49A68CYS0-0.009-0.00823.1540.0050.0050.0000.0000.0000.000
50A69ARG10.8040.87421.5400.0740.0740.0000.0000.0000.000
51A70GLN00.0150.02327.654-0.004-0.0040.0000.0000.0000.000
52A71TRP00.0380.00130.8590.0020.0020.0000.0000.0000.000
53A72GLN00.0250.04133.5000.0000.0000.0000.0000.0000.000
54A73ARG10.9270.96328.6020.0090.0090.0000.0000.0000.000
55A74VAL00.0340.01028.186-0.001-0.0010.0000.0000.0000.000
56A75ILE0-0.0150.00121.8320.0030.0030.0000.0000.0000.000
57A76ALA00.003-0.01224.258-0.002-0.0020.0000.0000.0000.000
58A77GLN0-0.0380.02517.5940.0140.0140.0000.0000.0000.000
59A78PRO00.0160.00019.350-0.001-0.0010.0000.0000.0000.000
60A79GLY00.0360.02616.685-0.006-0.0060.0000.0000.0000.000
61A80LYS10.8520.95113.5710.5160.5160.0000.0000.0000.000
62A81LEU00.0130.01416.152-0.009-0.0090.0000.0000.0000.000
63A82MET00.0000.01311.590-0.081-0.0810.0000.0000.0000.000
64A83ASN0-0.004-0.01315.4830.0530.0530.0000.0000.0000.000
65A84ARG10.9410.9749.9070.2860.2860.0000.0000.0000.000
66A85ASP-1-0.867-0.92915.328-0.187-0.1870.0000.0000.0000.000
67A86SER0-0.125-0.06417.9190.0310.0310.0000.0000.0000.000
68A87GLU-1-0.823-0.87118.555-0.111-0.1110.0000.0000.0000.000
69A88ILE0-0.021-0.01718.250-0.033-0.0330.0000.0000.0000.000
70A89TYR0-0.016-0.02815.1880.0240.0240.0000.0000.0000.000
71A90ASN0-0.034-0.00917.117-0.043-0.0430.0000.0000.0000.000
72A91VAL00.0420.02410.8490.0060.0060.0000.0000.0000.000
73A92THR0-0.031-0.02913.969-0.011-0.0110.0000.0000.0000.000
74A93ALA00.013-0.00913.108-0.050-0.0500.0000.0000.0000.000
75A94SER0-0.074-0.04412.988-0.010-0.0100.0000.0000.0000.000
76A95LEU0-0.040-0.0236.6020.0410.0410.0000.0000.0000.000
77A96ASP-1-0.842-0.89210.504-0.078-0.0780.0000.0000.0000.000
78A97ILE0-0.046-0.0409.046-0.054-0.0540.0000.0000.0000.000
79A98TYR0-0.024-0.01413.4650.0450.0450.0000.0000.0000.000
80A99PRO00.0500.04517.061-0.020-0.0200.0000.0000.0000.000
81A100VAL0-0.027-0.01519.0210.0190.0190.0000.0000.0000.000
82A101GLU-1-0.844-0.90222.121-0.111-0.1110.0000.0000.0000.000
83A102ARG10.8220.89525.2170.0950.0950.0000.0000.0000.000
84A103GLU-1-0.877-0.93028.417-0.060-0.0600.0000.0000.0000.000
85A104GLY00.0000.00532.0190.0040.0040.0000.0000.0000.000
86A105ASN0-0.011-0.01333.090-0.009-0.0090.0000.0000.0000.000
87A106THR0-0.015-0.00232.2360.0010.0010.0000.0000.0000.000
88A107ILE00.0340.01225.532-0.004-0.0040.0000.0000.0000.000
89A108SER00.0270.04026.0330.0080.0080.0000.0000.0000.000
90A109TYR0-0.022-0.05319.987-0.018-0.0180.0000.0000.0000.000
91A110ASP-1-0.732-0.85320.889-0.050-0.0500.0000.0000.0000.000
92A111ARG10.8660.91422.2410.0330.0330.0000.0000.0000.000
93A112MET0-0.035-0.00124.6780.0100.0100.0000.0000.0000.000
94A113THR00.0160.01427.623-0.003-0.0030.0000.0000.0000.000
95A114LEU0-0.032-0.00726.9880.0040.0040.0000.0000.0000.000
96A115SER00.007-0.00330.572-0.001-0.0010.0000.0000.0000.000
97A116ARG10.7980.89732.0610.0760.0760.0000.0000.0000.000
98A117VAL0-0.036-0.00933.4240.0060.0060.0000.0000.0000.000
99A118GLU-1-0.934-0.97234.953-0.056-0.0560.0000.0000.0000.000
100A119ARG10.8510.90536.0350.0470.0470.0000.0000.0000.000
101A120LEU00.0310.02929.9530.0010.0010.0000.0000.0000.000
102A121THR00.0430.00633.2390.0020.0020.0000.0000.0000.000
103A122PRO00.013-0.00134.425-0.004-0.0040.0000.0000.0000.000
104A123GLU-1-0.916-0.95433.111-0.042-0.0420.0000.0000.0000.000
105A124CYS00.0750.04529.332-0.005-0.0050.0000.0000.0000.000
106A125GLU-1-0.752-0.82130.244-0.062-0.0620.0000.0000.0000.000
107A126LYS10.9480.97532.0300.0370.0370.0000.0000.0000.000
108A127ALA00.0340.02527.871-0.002-0.0020.0000.0000.0000.000
109A128TRP00.0460.03624.102-0.007-0.0070.0000.0000.0000.000
110A129ALA00.0020.00428.010-0.006-0.0060.0000.0000.0000.000
111A130LYS10.9030.95228.3240.0610.0610.0000.0000.0000.000
112A131ALA00.0310.03724.013-0.002-0.0020.0000.0000.0000.000
113A132ARG10.9270.93925.3350.1230.1230.0000.0000.0000.000
114A133ALA0-0.0070.02226.780-0.004-0.0040.0000.0000.0000.000
115A134THR0-0.0340.00924.3850.0010.0010.0000.0000.0000.000
116A135GLY00.0050.02023.594-0.009-0.0090.0000.0000.0000.000
117A136PRO0-0.012-0.00922.9430.0110.0110.0000.0000.0000.000
118A137VAL00.0260.00625.9270.0040.0040.0000.0000.0000.000
119A138NME0-0.0120.00328.465-0.008-0.0080.0000.0000.0000.000
120A201HOH0-0.014-0.00719.7770.0010.0010.0000.0000.0000.000
121A202HOH00.0260.01233.700-0.002-0.0020.0000.0000.0000.000
122A203HOH00.001-0.00633.4920.0000.0000.0000.0000.0000.000
123A204HOH0-0.009-0.00634.119-0.001-0.0010.0000.0000.0000.000
124A205HOH0-0.017-0.00332.5450.0020.0020.0000.0000.0000.000
125A207HOH0-0.055-0.05014.5760.0010.0010.0000.0000.0000.000
126A208HOH00.0280.01914.108-0.020-0.0200.0000.0000.0000.000
127A211HOH0-0.008-0.00319.3160.0050.0050.0000.0000.0000.000
128A212HOH0-0.024-0.02821.2070.0080.0080.0000.0000.0000.000
129A213HOH00.0230.01435.8460.0000.0000.0000.0000.0000.000
130A214HOH0-0.029-0.02431.3880.0020.0020.0000.0000.0000.000
131A215HOH0-0.0030.00012.2690.0160.0160.0000.0000.0000.000
132A216HOH0-0.031-0.03839.4060.0000.0000.0000.0000.0000.000
133A217HOH0-0.002-0.01024.3270.0060.0060.0000.0000.0000.000
134A218HOH0-0.023-0.01932.469-0.002-0.0020.0000.0000.0000.000
135A219HOH0-0.024-0.01511.056-0.030-0.0300.0000.0000.0000.000
136A220HOH0-0.004-0.00928.9510.0010.0010.0000.0000.0000.000
137A221HOH0-0.015-0.00522.4520.0040.0040.0000.0000.0000.000
138A224HOH00.0120.00629.885-0.001-0.0010.0000.0000.0000.000
139A225HOH00.0380.0338.356-0.057-0.0570.0000.0000.0000.000
140A226HOH0-0.003-0.00425.921-0.001-0.0010.0000.0000.0000.000
141A227HOH00.017-0.00420.4240.0000.0000.0000.0000.0000.000
142A228HOH0-0.039-0.03133.3610.0000.0000.0000.0000.0000.000
143A229HOH0-0.014-0.01428.4910.0030.0030.0000.0000.0000.000
144A230HOH0-0.032-0.03124.3710.0020.0020.0000.0000.0000.000
145A232HOH0-0.017-0.01734.1410.0000.0000.0000.0000.0000.000
146A233HOH0-0.034-0.03727.5180.0040.0040.0000.0000.0000.000
147A234HOH0-0.048-0.03237.256-0.001-0.0010.0000.0000.0000.000
148A235HOH0-0.076-0.05626.6070.0040.0040.0000.0000.0000.000
149A236HOH0-0.021-0.01936.7000.0010.0010.0000.0000.0000.000
150A237HOH0-0.029-0.03235.230-0.001-0.0010.0000.0000.0000.000
151A238HOH0-0.035-0.02611.9980.0460.0460.0000.0000.0000.000
152A239HOH0-0.037-0.03323.0260.0030.0030.0000.0000.0000.000
153A240HOH00.0280.01938.439-0.001-0.0010.0000.0000.0000.000
154A242HOH0-0.042-0.02925.913-0.005-0.0050.0000.0000.0000.000
155A243HOH0-0.075-0.0669.5650.0350.0350.0000.0000.0000.000
156A245HOH00.0270.01731.2420.0000.0000.0000.0000.0000.000
157A246HOH0-0.031-0.01623.6360.0010.0010.0000.0000.0000.000
158A248HOH0-0.038-0.03339.235-0.001-0.0010.0000.0000.0000.000
159A249HOH00.0430.03227.6110.0010.0010.0000.0000.0000.000
160A250HOH00.0000.00111.012-0.038-0.0380.0000.0000.0000.000
161A251HOH0-0.029-0.02032.7190.0020.0020.0000.0000.0000.000
162A252HOH0-0.039-0.02831.962-0.001-0.0010.0000.0000.0000.000
163A253HOH0-0.005-0.00226.1660.0040.0040.0000.0000.0000.000
164A254HOH0-0.039-0.03030.802-0.001-0.0010.0000.0000.0000.000
165A255HOH0-0.053-0.04921.7970.0100.0100.0000.0000.0000.000
166A256HOH0-0.032-0.03926.6740.0020.0020.0000.0000.0000.000
167A257HOH00.0420.02725.753-0.001-0.0010.0000.0000.0000.000
168A258HOH0-0.027-0.01323.5190.0020.0020.0000.0000.0000.000
169A260HOH00.003-0.00433.0460.0000.0000.0000.0000.0000.000
170A261HOH00.018-0.00232.2650.0010.0010.0000.0000.0000.000
171A262HOH00.0290.02328.2720.0010.0010.0000.0000.0000.000
172A263HOH0-0.057-0.04728.1880.0040.0040.0000.0000.0000.000
173A264HOH00.0130.01215.2900.0250.0250.0000.0000.0000.000
174A266HOH00.004-0.01129.7660.0000.0000.0000.0000.0000.000
175A267HOH00.0190.01923.4930.0060.0060.0000.0000.0000.000
176A269HOH0-0.033-0.01929.856-0.002-0.0020.0000.0000.0000.000
177A271HOH0-0.012-0.01837.5990.0000.0000.0000.0000.0000.000
178A272HOH0-0.014-0.02335.945-0.001-0.0010.0000.0000.0000.000
179A273HOH00.0300.02629.9610.0000.0000.0000.0000.0000.000
180A276HOH00.0100.00634.637-0.002-0.0020.0000.0000.0000.000
181A277HOH0-0.043-0.02730.4670.0030.0030.0000.0000.0000.000
182A282HOH0-0.013-0.02934.2260.0000.0000.0000.0000.0000.000
183A283HOH0-0.032-0.01937.7830.0010.0010.0000.0000.0000.000
184A284HOH0-0.019-0.02316.981-0.007-0.0070.0000.0000.0000.000
185A285HOH0-0.044-0.03420.567-0.001-0.0010.0000.0000.0000.000
186A287HOH00.0080.02428.3900.0030.0030.0000.0000.0000.000
187A289HOH0-0.0050.00236.5950.0010.0010.0000.0000.0000.000
188A290HOH0-0.031-0.02522.481-0.005-0.0050.0000.0000.0000.000
189A294HOH0-0.041-0.03230.3220.0010.0010.0000.0000.0000.000
190A295HOH0-0.010-0.0226.247-0.311-0.3110.0000.0000.0000.000
191A296HOH00.0160.02215.6490.0100.0100.0000.0000.0000.000
192A297HOH0-0.005-0.01831.721-0.002-0.0020.0000.0000.0000.000
193A298HOH00.0060.00731.5130.0020.0020.0000.0000.0000.000
194A299HOH00.0310.02037.380-0.002-0.0020.0000.0000.0000.000
195A301HOH00.0110.00222.880-0.008-0.0080.0000.0000.0000.000
196A304HOH0-0.0070.00419.8420.0090.0090.0000.0000.0000.000
197A307HOH00.0400.02812.950-0.019-0.0190.0000.0000.0000.000
198A309HOH0-0.006-0.0146.561-0.016-0.0160.0000.0000.0000.000
199A312HOH00.0280.01325.5300.0010.0010.0000.0000.0000.000
200A313HOH0-0.035-0.03038.0460.0010.0010.0000.0000.0000.000
201A315HOH00.006-0.00637.2280.0000.0000.0000.0000.0000.000
202A316HOH0-0.036-0.03618.7900.0020.0020.0000.0000.0000.000
203A317HOH0-0.023-0.01939.8510.0010.0010.0000.0000.0000.000
204A319HOH0-0.020-0.01426.480-0.001-0.0010.0000.0000.0000.000
205A320HOH0-0.086-0.10531.4980.0000.0000.0000.0000.0000.000
206A325HOH0-0.052-0.03236.3110.0000.0000.0000.0000.0000.000
207A332HOH0-0.055-0.05330.1710.0010.0010.0000.0000.0000.000
208A333HOH0-0.017-0.01334.9500.0010.0010.0000.0000.0000.000
209A334HOH00.007-0.00637.6760.0010.0010.0000.0000.0000.000
210A335HOH00.0370.02239.160-0.001-0.0010.0000.0000.0000.000
211A336HOH0-0.051-0.03536.9910.0020.0020.0000.0000.0000.000
212A337HOH0-0.030-0.02620.050-0.001-0.0010.0000.0000.0000.000
213A340HOH0-0.010-0.00118.212-0.015-0.0150.0000.0000.0000.000
214A349HOH00.0330.02234.580-0.002-0.0020.0000.0000.0000.000
215A351HOH00.041-0.00316.794-0.011-0.0110.0000.0000.0000.000
216A352HOH00.0010.00927.023-0.002-0.0020.0000.0000.0000.000
217A353HOH00.0310.02323.354-0.006-0.0060.0000.0000.0000.000