Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: P75KP

Calculation Name: 3OMP-B-Xray11

Preferred Name: Estrogen receptor beta

Target Type: SINGLE PROTEIN

Ligand Name: 2-(trifluoroacetyl)-1,2,3,4-tetrahydroisoquinolin-7-ol

ligand 3-letter code: W14

PDB ID: 3OMP

Chain ID: B

ChEMBL ID: CHEMBL242

UniProt ID: Q92731

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.2017021
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 233
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3030526.143719
FMO2-HF: Nuclear repulsion 2934710.126859
FMO2-HF: Total energy -95816.016861
FMO2-MP2: Total energy -96084.32633


3D Structure
Snapshot
 
Ligand structure

W14

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-68.791-38.55940.148-21.872-48.511-0.007


Interactive mode: IFIE and PIEDA for fragment #233(D:1:W14)


Summations of interaction energy for fragment #233(D:1:W14)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-68.791-38.55940.148-21.872-48.5110.007
Interaction energy analysis for fragmet #233(D:1:W14)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.007 / q_NPA : -0.026
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1D264SER10.7050.82425.8040.3990.3990.0000.0000.0000.000
2D265PRO00.1260.04325.637-0.034-0.0340.0000.0000.0000.000
3D266GLU-1-0.769-0.89224.305-0.561-0.5610.0000.0000.0000.000
4D267GLN00.0420.04825.223-0.028-0.0280.0000.0000.0000.000
5D268LEU0-0.0150.01121.510-0.008-0.0080.0000.0000.0000.000
6D269VAL0-0.034-0.01221.046-0.052-0.0520.0000.0000.0000.000
7D270LEU00.0140.01820.399-0.072-0.0720.0000.0000.0000.000
8D271THR00.0250.00320.591-0.047-0.0470.0000.0000.0000.000
9D272LEU0-0.007-0.01616.690-0.047-0.0470.0000.0000.0000.000
10D273LEU0-0.038-0.01715.997-0.127-0.1270.0000.0000.0000.000
11D274GLU-1-0.915-0.97016.319-0.690-0.6900.0000.0000.0000.000
12D275ALA00.0280.01815.2170.0010.0010.0000.0000.0000.000
13D276GLU-1-0.746-0.82710.440-2.429-2.4290.0000.0000.0000.000
14D277PRO00.0060.0178.5630.2460.2460.0000.0000.0000.000
15D278PRO0-0.029-0.02210.827-0.105-0.1050.0000.0000.0000.000
16D279HIS0-0.030-0.0166.962-0.681-0.6810.0000.0000.0000.000
17D280VAL0-0.0050.0065.1330.6840.6840.0000.0000.0000.000
18D281LEU0-0.009-0.0066.560-0.021-0.0210.0000.0000.0000.000
19D282ILE0-0.014-0.0126.4180.1950.1950.0000.0000.0000.000
20D283SER00.0190.0039.256-0.103-0.1030.0000.0000.0000.000
21D284ARG10.7870.84910.6540.1360.1360.0000.0000.0000.000
22D285PRO0-0.0170.00011.088-0.039-0.0390.0000.0000.0000.000
23D286SER0-0.0050.00014.198-0.024-0.0240.0000.0000.0000.000
24D287ALA0-0.026-0.01916.376-0.008-0.0080.0000.0000.0000.000
25D288PRO00.0130.00915.6040.0120.0120.0000.0000.0000.000
26D289PHE00.0220.0249.6670.0810.0810.0000.0000.0000.000
27D290THR0-0.016-0.02212.130-0.027-0.0270.0000.0000.0000.000
28D291GLU-1-0.722-0.8709.2591.8141.8140.0000.0000.0000.000
29D292ALA00.0530.0369.2660.3960.3960.0000.0000.0000.000
30D293SER0-0.035-0.02910.4420.2340.2340.0000.0000.0000.000
31D294MET00.0310.0196.209-0.079-0.0790.0000.0000.0000.000
32D295MET00.0490.0422.646-2.603-0.9910.820-0.879-1.5540.011
33D296MET00.0330.0626.3800.4040.4040.0000.0000.0000.000
34D297SER0-0.022-0.0267.594-0.304-0.3040.0000.0000.0000.000
35D298LEU00.005-0.0122.134-1.611-0.3212.053-0.761-2.5810.001
36D299THR0-0.005-0.0272.576-5.050-2.2730.841-1.333-2.285-0.018
37D300LYS10.8240.9054.689-1.712-1.671-0.001-0.008-0.0310.000
38D301LEU0-0.031-0.0132.565-2.457-0.7401.704-0.933-2.4880.010
39D302ALA00.0370.0192.375-3.624-0.8162.223-1.504-3.5270.006
40D303ASP-1-0.735-0.8543.581-1.159-1.1360.0910.302-0.4170.002
41D304LYS10.8060.8956.588-0.815-0.8150.0000.0000.0000.000
42D305GLU-1-0.780-0.8591.684-32.461-36.86813.526-5.433-3.686-0.059
43D306LEU00.0050.0115.276-0.150-0.073-0.001-0.001-0.0760.000
44D307VAL00.002-0.0107.8100.0170.0170.0000.0000.0000.000
45D308HIS0-0.022-0.0177.8970.1420.1420.0000.0000.0000.000
46D309MET0-0.0250.0078.4260.0880.0880.0000.0000.0000.000
47D310ILE00.0380.01610.1810.1280.1280.0000.0000.0000.000
48D311SER0-0.022-0.02513.1920.1190.1190.0000.0000.0000.000
49D312TRP0-0.0280.01011.486-0.013-0.0130.0000.0000.0000.000
50D313ALA00.0420.01113.5350.0850.0850.0000.0000.0000.000
51D314LYS10.8960.93315.5370.5020.5020.0000.0000.0000.000
52D315LYS10.7850.91814.8431.0581.0580.0000.0000.0000.000
53D316ILE0-0.0180.00615.5790.0260.0260.0000.0000.0000.000
54D317PRO00.001-0.01619.9030.0550.0550.0000.0000.0000.000
55D318GLY00.0370.01323.571-0.004-0.0040.0000.0000.0000.000
56D319PHE00.0330.02017.3570.0220.0220.0000.0000.0000.000
57D320VAL0-0.019-0.02021.7330.0320.0320.0000.0000.0000.000
58D321GLU-1-0.903-0.94223.785-0.159-0.1590.0000.0000.0000.000
59D322LEU0-0.0140.01921.5700.0200.0200.0000.0000.0000.000
60D323SER00.003-0.02725.3260.0110.0110.0000.0000.0000.000
61D324LEU00.006-0.01323.262-0.018-0.0180.0000.0000.0000.000
62D325PHE00.0220.01222.9460.0120.0120.0000.0000.0000.000
63D326ASP-1-0.785-0.87021.566-0.128-0.1280.0000.0000.0000.000
64D327GLN0-0.091-0.05219.694-0.050-0.0500.0000.0000.0000.000
65D328VAL00.0220.00417.102-0.059-0.0590.0000.0000.0000.000
66D329ARG10.7910.87716.877-0.125-0.1250.0000.0000.0000.000
67D330LEU0-0.004-0.01516.7740.0150.0150.0000.0000.0000.000
68D331LEU00.0030.00813.051-0.057-0.0570.0000.0000.0000.000
69D332GLU-1-0.790-0.86912.4270.2250.2250.0000.0000.0000.000
70D333SER0-0.036-0.01112.7370.1200.1200.0000.0000.0000.000
71D334CYS0-0.0180.01710.845-0.054-0.0540.0000.0000.0000.000
72D335TRP00.0580.0075.845-0.477-0.4770.0000.0000.0000.000
73D336MET00.0240.0313.018-4.393-2.0921.814-1.138-2.976-0.002
74D337GLU-1-0.797-0.8814.810-1.966-1.818-0.001-0.005-0.1420.000
75D338VAL0-0.031-0.0206.422-0.664-0.6640.0000.0000.0000.000
76D339LEU0-0.0140.0052.717-3.840-1.6512.613-1.182-3.6200.011
77D340MET0-0.027-0.0102.385-8.264-4.4763.740-2.024-5.504-0.010
78D341MET0-0.007-0.0023.2810.9690.8790.0130.290-0.2130.000
79D342GLY0-0.0080.0015.1030.6650.6650.0000.0000.0000.000
80D343LEU00.0070.0142.618-2.246-0.3353.032-1.101-3.8410.008
81D344MET0-0.0230.0024.5761.2271.3370.000-0.021-0.0890.000
82D345TRP0-0.025-0.0097.3670.6300.6300.0000.0000.0000.000
83D346ARG10.7290.8182.7408.0259.0150.043-0.421-0.6120.000
84D347SER00.004-0.0067.6700.4520.4520.0000.0000.0000.000
85D348ILE00.0070.01710.3050.2340.2340.0000.0000.0000.000
86D349ASP-1-0.862-0.94013.039-0.800-0.8000.0000.0000.0000.000
87D350HIS0-0.036-0.00612.9520.1900.1900.0000.0000.0000.000
88D351PRO0-0.010-0.00914.523-0.019-0.0190.0000.0000.0000.000
89D352GLY0-0.0030.00313.2160.0770.0770.0000.0000.0000.000
90D353LYS10.8210.89411.2410.4420.4420.0000.0000.0000.000
91D354LEU0-0.0020.0045.199-0.159-0.1590.0000.0000.0000.000
92D355ILE00.0060.0038.5180.3140.3140.0000.0000.0000.000
93D356PHE00.0310.0052.062-5.015-2.0773.514-1.367-5.0860.010
94D357ALA00.0210.0094.914-1.487-1.351-0.001-0.008-0.1280.000
95D358PRO0-0.027-0.0277.4920.2030.2030.0000.0000.0000.000
96D359ASP-1-0.864-0.89710.840-0.072-0.0720.0000.0000.0000.000
97D360LEU0-0.009-0.0066.1720.0880.0880.0000.0000.0000.000
98D361VAL00.0090.0058.607-0.108-0.1080.0000.0000.0000.000
99D362LEU0-0.021-0.0076.1270.1960.1960.0000.0000.0000.000
100D363ASP-1-0.837-0.9259.789-0.418-0.4180.0000.0000.0000.000
101D364ARG10.7890.84610.1050.0930.0930.0000.0000.0000.000
102D365ASP-1-0.784-0.88910.7140.2260.2260.0000.0000.0000.000
103D366GLU-1-0.751-0.83210.7060.1700.1700.0000.0000.0000.000
104D367GLY00.0400.0188.5320.1430.1430.0000.0000.0000.000
105D368LYS10.8220.8859.167-0.026-0.0260.0000.0000.0000.000
106D369CYS0-0.106-0.02011.1620.0620.0620.0000.0000.0000.000
107D370VAL00.009-0.0176.2720.1350.1350.0000.0000.0000.000
108D371GLU-1-0.823-0.8929.5311.5071.5070.0000.0000.0000.000
109D372GLY00.0440.0177.4490.4070.4070.0000.0000.0000.000
110D373ILE0-0.028-0.0102.789-1.857-0.3480.430-0.678-1.2620.006
111D374LEU0-0.014-0.0085.390-0.511-0.456-0.0010.000-0.0540.000
112D375GLU-1-0.825-0.8968.1510.3950.3950.0000.0000.0000.000
113D376ILE00.0150.0072.700-2.841-0.5651.020-1.134-2.1630.010
114D377PHE0-0.008-0.0163.736-1.032-0.6600.002-0.035-0.3390.000
115D378ASP-1-0.752-0.8347.153-0.302-0.3020.0000.0000.0000.000
116D379MET0-0.034-0.0048.273-0.114-0.1140.0000.0000.0000.000
117D380LEU00.0400.0242.944-0.780-0.1410.075-0.132-0.582-0.001
118D381LEU00.0220.0287.4120.0130.0130.0000.0000.0000.000
119D382ALA0-0.0020.01610.4500.0470.0470.0000.0000.0000.000
120D383THR0-0.017-0.0299.7700.0930.0930.0000.0000.0000.000
121D384THR0-0.023-0.0309.209-0.073-0.0730.0000.0000.0000.000
122D385SER0-0.060-0.04011.6870.0960.0960.0000.0000.0000.000
123D386ARG10.8240.91114.6700.5140.5140.0000.0000.0000.000
124D387PHE00.0510.00210.2870.0750.0750.0000.0000.0000.000
125D388ARG10.8500.92514.0880.8390.8390.0000.0000.0000.000
126D389GLU-1-0.873-0.92217.044-0.377-0.3770.0000.0000.0000.000
127D390LEU0-0.022-0.02117.4610.0520.0520.0000.0000.0000.000
128D391LYS10.8600.93619.4080.5090.5090.0000.0000.0000.000
129D392LEU0-0.0280.00613.5190.0240.0240.0000.0000.0000.000
130D393GLN0-0.012-0.02317.097-0.049-0.0490.0000.0000.0000.000
131D394HIS00.0300.01613.5210.0360.0360.0000.0000.0000.000
132D395LYS10.8520.90416.0450.5890.5890.0000.0000.0000.000
133D396GLU-1-0.773-0.87017.589-0.674-0.6740.0000.0000.0000.000
134D397TYR00.004-0.0208.878-0.135-0.1350.0000.0000.0000.000
135D398LEU00.0060.02313.201-0.096-0.0960.0000.0000.0000.000
136D399CYS0-0.043-0.01314.5700.0210.0210.0000.0000.0000.000
137D400VAL00.0180.00212.8730.0530.0530.0000.0000.0000.000
138D401LYS10.8200.8978.1252.7672.7670.0000.0000.0000.000
139D402ALA00.0130.01312.2620.0400.0400.0000.0000.0000.000
140D403MET0-0.034-0.02615.2630.0990.0990.0000.0000.0000.000
141D404ILE0-0.018-0.01210.1190.0790.0790.0000.0000.0000.000
142D405LEU0-0.009-0.00213.4530.1030.1030.0000.0000.0000.000
143D406LEU0-0.0010.00414.3390.1300.1300.0000.0000.0000.000
144D407ASN0-0.0340.00515.8100.1350.1350.0000.0000.0000.000
145D408SER00.008-0.00415.9740.0290.0290.0000.0000.0000.000
146D409SER0-0.018-0.01716.7970.0160.0160.0000.0000.0000.000
147D410MET0-0.0120.01418.6850.0430.0430.0000.0000.0000.000
148D411TYR0-0.038-0.04018.0540.0100.0100.0000.0000.0000.000
149D412PRO00.007-0.00722.131-0.005-0.0050.0000.0000.0000.000
150D413LEU00.0430.02823.7490.0250.0250.0000.0000.0000.000
151D414VAL0-0.021-0.00327.007-0.019-0.0190.0000.0000.0000.000
152D415THR00.0090.00228.2080.0080.0080.0000.0000.0000.000
153D416ALA00.010-0.00231.516-0.006-0.0060.0000.0000.0000.000
154D417THR0-0.047-0.03330.860-0.011-0.0110.0000.0000.0000.000
155D418GLN00.0280.02830.360-0.006-0.0060.0000.0000.0000.000
156D419ASP-1-0.758-0.85830.156-0.120-0.1200.0000.0000.0000.000
157D420ALA00.0210.00730.312-0.011-0.0110.0000.0000.0000.000
158D421ASP-1-0.787-0.86831.262-0.129-0.1290.0000.0000.0000.000
159D422SER0-0.045-0.03926.726-0.027-0.0270.0000.0000.0000.000
160D423SER0-0.0230.00526.617-0.023-0.0230.0000.0000.0000.000
161D424ARG10.8220.86427.2730.0950.0950.0000.0000.0000.000
162D425LYS10.7990.89527.4140.1490.1490.0000.0000.0000.000
163D426LEU00.0410.02620.755-0.033-0.0330.0000.0000.0000.000
164D427ALA00.0010.00123.920-0.035-0.0350.0000.0000.0000.000
165D428HIS0-0.026-0.01226.002-0.015-0.0150.0000.0000.0000.000
166D429LEU00.0100.00121.389-0.021-0.0210.0000.0000.0000.000
167D430LEU00.0130.01519.734-0.047-0.0470.0000.0000.0000.000
168D431ASN00.0080.01622.485-0.036-0.0360.0000.0000.0000.000
169D432ALA0-0.0040.00524.830-0.018-0.0180.0000.0000.0000.000
170D433VAL00.015-0.02218.490-0.019-0.0190.0000.0000.0000.000
171D434THR00.000-0.01121.588-0.042-0.0420.0000.0000.0000.000
172D435ASP-1-0.822-0.90223.137-0.355-0.3550.0000.0000.0000.000
173D436ALA0-0.053-0.01921.6120.0020.0020.0000.0000.0000.000
174D437LEU00.0370.01218.474-0.013-0.0130.0000.0000.0000.000
175D438VAL00.0290.00921.6740.0090.0090.0000.0000.0000.000
176D439TRP00.0510.02025.1010.0150.0150.0000.0000.0000.000
177D440VAL0-0.027-0.00621.1580.0200.0200.0000.0000.0000.000
178D441ILE00.0100.00021.6040.0170.0170.0000.0000.0000.000
179D442ALA00.0080.01724.7540.0170.0170.0000.0000.0000.000
180D443LYS10.8110.91126.3070.4640.4640.0000.0000.0000.000
181D444SER0-0.029-0.01123.468-0.006-0.0060.0000.0000.0000.000
182D445GLY00.011-0.00225.021-0.014-0.0140.0000.0000.0000.000
183D446ILE0-0.042-0.00924.9780.0180.0180.0000.0000.0000.000
184D447SER00.0470.02428.781-0.004-0.0040.0000.0000.0000.000
185D448SER00.0550.00730.492-0.004-0.0040.0000.0000.0000.000
186D449GLN00.0380.02630.662-0.001-0.0010.0000.0000.0000.000
187D450GLN00.017-0.00527.951-0.019-0.0190.0000.0000.0000.000
188D451GLN0-0.034-0.00326.303-0.014-0.0140.0000.0000.0000.000
189D452SER00.0210.00425.858-0.021-0.0210.0000.0000.0000.000
190D453MET0-0.0070.00925.269-0.008-0.0080.0000.0000.0000.000
191D454ARG10.8170.89920.3380.5720.5720.0000.0000.0000.000
192D455LEU00.0130.00821.503-0.041-0.0410.0000.0000.0000.000
193D456ALA00.0260.01222.034-0.018-0.0180.0000.0000.0000.000
194D457ASN0-0.024-0.02719.938-0.007-0.0070.0000.0000.0000.000
195D458LEU00.0110.00416.413-0.040-0.0400.0000.0000.0000.000
196D459LEU0-0.002-0.00317.200-0.042-0.0420.0000.0000.0000.000
197D460MET0-0.029-0.01018.7190.0210.0210.0000.0000.0000.000
198D461LEU00.0030.00314.1100.0180.0180.0000.0000.0000.000
199D462LEU00.0050.01113.587-0.116-0.1160.0000.0000.0000.000
200D463SER0-0.019-0.01813.7650.0140.0140.0000.0000.0000.000
201D464HIS0-0.020-0.00311.8610.0630.0630.0000.0000.0000.000
202D465VAL0-0.0040.0017.729-0.056-0.0560.0000.0000.0000.000
203D466ARG10.8300.8868.8390.4160.4160.0000.0000.0000.000
204D467HIS0-0.045-0.02010.3210.2670.2670.0000.0000.0000.000
205D468ALA00.0450.0136.3510.2270.2270.0000.0000.0000.000
206D469SER00.0260.0005.4740.3880.423-0.001-0.003-0.0310.000
207D470ASN00.008-0.0026.0950.5690.5690.0000.0000.0000.000
208D471LYS10.8210.8996.393-0.445-0.4450.0000.0000.0000.000
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