FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37478

Number of unique PDB entries: 7783

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FMODB ID: P76QK

Calculation Name: 1V8H-A-Xray20

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1V8H

Chain ID: A

ChEMBL ID:

UniProt ID: Q5SME6

Base Structure: X-ray

Registration Date: 2018-06-07

Reference:

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 221
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -999707.195842
FMO2-HF: Nuclear repulsion 951187.402501
FMO2-HF: Total energy -48519.793341
FMO2-MP2: Total energy -48661.594042


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:PRO)


Summations of interaction energy for fragment #1(A:2:PRO)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-71.814-59.08810.015-11.128-11.615-0.115
Interaction energy analysis for fragmet #1(A:2:PRO)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.837 / q_NPA : 0.906
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4ARG10.8970.9143.79535.00636.359-0.017-0.538-0.7980.001
4A5THR00.0140.0035.9692.8792.8790.0000.0000.0000.000
5A6ILE0-0.0220.0008.1550.2180.2180.0000.0000.0000.000
6A7ALA00.0060.00711.4810.5790.5790.0000.0000.0000.000
7A8ARG10.8890.92413.80514.96414.9640.0000.0000.0000.000
8A9LEU00.0220.02217.5360.0010.0010.0000.0000.0000.000
9A10ASN0-0.0190.02020.8180.2960.2960.0000.0000.0000.000
10A11PRO00.0840.01023.9310.0830.0830.0000.0000.0000.000
11A12ALA00.0170.01723.245-0.245-0.2450.0000.0000.0000.000
12A13LYS10.9811.00023.97110.32010.3200.0000.0000.0000.000
13A14PRO00.0030.02825.5840.4750.4750.0000.0000.0000.000
14A15LYS10.9320.97128.5308.9698.9690.0000.0000.0000.000
15A16ALA00.0260.01131.105-0.142-0.1420.0000.0000.0000.000
16A17GLY0-0.016-0.02731.6150.2720.2720.0000.0000.0000.000
17A18GLU-1-0.859-0.90330.660-9.319-9.3190.0000.0000.0000.000
18A19GLU-1-0.887-0.92728.131-10.604-10.6040.0000.0000.0000.000
19A20PHE0-0.046-0.03021.8040.0460.0460.0000.0000.0000.000
20A21ARG10.8870.93522.50411.23611.2360.0000.0000.0000.000
21A22LEU00.0300.03215.893-0.092-0.0920.0000.0000.0000.000
22A23GLN0-0.032-0.01817.5880.0460.0460.0000.0000.0000.000
23A24VAL00.0450.01211.291-0.435-0.4350.0000.0000.0000.000
24A25VAL00.0020.00912.9370.5560.5560.0000.0000.0000.000
25A26ALA00.0200.0158.715-1.771-1.7710.0000.0000.0000.000
26A27GLN00.0170.0258.531-0.616-0.6160.0000.0000.0000.000
27A28HIS0-0.015-0.0326.698-2.197-2.1970.0000.0000.0000.000
28A29PRO00.0660.0589.2882.6492.6490.0000.0000.0000.000
29A30ASN00.026-0.01211.4710.9280.9280.0000.0000.0000.000
30A31GLU-1-0.732-0.82613.049-16.741-16.7410.0000.0000.0000.000
31A32PRO0-0.035-0.01215.071-0.521-0.5210.0000.0000.0000.000
32A33GLY00.0340.02017.8640.2020.2020.0000.0000.0000.000
33A34THR0-0.055-0.01818.8850.5590.5590.0000.0000.0000.000
34A35ARG10.8900.95717.76317.13617.1360.0000.0000.0000.000
35A36ARG10.8260.89221.82611.34911.3490.0000.0000.0000.000
36A37ASP-1-0.766-0.86921.470-13.579-13.5790.0000.0000.0000.000
37A38ALA00.002-0.02123.2610.5130.5130.0000.0000.0000.000
38A39GLU-1-0.953-0.96225.509-11.571-11.5710.0000.0000.0000.000
39A40GLY0-0.0120.00426.5100.3770.3770.0000.0000.0000.000
40A41LYS10.8790.93420.60214.83614.8360.0000.0000.0000.000
41A42LEU0-0.030-0.00921.544-0.319-0.3190.0000.0000.0000.000
42A43ILE00.0280.02916.276-0.412-0.4120.0000.0000.0000.000
43A44PRO00.0320.00814.7980.2640.2640.0000.0000.0000.000
44A45ALA00.0640.04015.054-0.895-0.8950.0000.0000.0000.000
45A46LYS10.8260.9155.73441.93741.9370.0000.0000.0000.000
46A47TYR0-0.022-0.00311.701-0.190-0.1900.0000.0000.0000.000
47A48ILE00.0190.0168.630-0.495-0.4950.0000.0000.0000.000
48A49ASN00.0560.03010.9500.7920.7920.0000.0000.0000.000
49A50LEU0-0.020-0.00311.7661.7961.7960.0000.0000.0000.000
50A51VAL00.0180.01911.215-2.410-2.4100.0000.0000.0000.000
51A52GLU-1-0.782-0.85812.095-18.463-18.4630.0000.0000.0000.000
52A53VAL0-0.002-0.00112.892-1.433-1.4330.0000.0000.0000.000
53A54TYR00.0010.00614.1670.9860.9860.0000.0000.0000.000
54A55PHE0-0.003-0.00216.691-0.457-0.4570.0000.0000.0000.000
55A56GLU-1-0.803-0.88019.305-13.040-13.0400.0000.0000.0000.000
56A57GLY0-0.006-0.00418.3980.4230.4230.0000.0000.0000.000
57A58GLU-1-0.946-0.96219.400-11.939-11.9390.0000.0000.0000.000
58A59LYS10.7660.86717.13916.17616.1760.0000.0000.0000.000
59A60VAL00.0280.01918.9830.7330.7330.0000.0000.0000.000
60A61ALA00.010-0.00718.5300.6040.6040.0000.0000.0000.000
61A62GLU-1-0.777-0.86616.852-16.782-16.7820.0000.0000.0000.000
62A63ALA0-0.0060.00616.2160.9850.9850.0000.0000.0000.000
63A64ARG10.9610.98215.94913.00913.0090.0000.0000.0000.000
64A65PRO0-0.053-0.02213.9760.9810.9810.0000.0000.0000.000
65A66GLY00.0870.05716.9690.8260.8260.0000.0000.0000.000
66A67PRO00.0140.00117.121-0.950-0.9500.0000.0000.0000.000
67A68SER00.0080.01018.8430.6430.6430.0000.0000.0000.000
68A69THR0-0.035-0.00615.5000.5210.5210.0000.0000.0000.000
69A70SER00.0390.01017.8400.2050.2050.0000.0000.0000.000
70A71ALA00.0050.01714.488-1.034-1.0340.0000.0000.0000.000
71A72ASN0-0.060-0.03312.607-0.899-0.8990.0000.0000.0000.000
72A73PRO0-0.0140.02311.9771.2371.2370.0000.0000.0000.000
73A74LEU00.0340.01014.041-1.031-1.0310.0000.0000.0000.000
74A75TYR00.0290.01011.8671.3181.3180.0000.0000.0000.000
75A76ALA00.0160.00316.686-0.125-0.1250.0000.0000.0000.000
76A77PHE00.0020.00315.6540.1100.1100.0000.0000.0000.000
77A78LYS10.9250.97120.85110.98110.9810.0000.0000.0000.000
78A79PHE00.0300.02919.585-0.202-0.2020.0000.0000.0000.000
79A80LYS10.9991.01225.1339.5799.5790.0000.0000.0000.000
80A81ALA00.0070.00527.110-0.236-0.2360.0000.0000.0000.000
81A82GLU-1-0.872-0.89827.787-9.646-9.6460.0000.0000.0000.000
82A83LYS10.9410.98127.6929.9349.9340.0000.0000.0000.000
83A84ALA00.0420.02425.636-0.355-0.3550.0000.0000.0000.000
84A85GLY00.0320.01922.6260.1770.1770.0000.0000.0000.000
85A86THR0-0.035-0.02516.109-0.174-0.1740.0000.0000.0000.000
86A87PHE00.0230.02516.0760.0210.0210.0000.0000.0000.000
87A88THR00.0090.01211.029-0.053-0.0530.0000.0000.0000.000
88A89ILE0-0.045-0.02510.8250.9430.9430.0000.0000.0000.000
89A90LYS10.9810.9978.06221.45121.4510.0000.0000.0000.000
90A91LEU0-0.017-0.0087.1552.9532.9530.0000.0000.0000.000
91A92LYS10.9430.9876.71720.17420.1740.0000.0000.0000.000
92A93ASP-1-0.719-0.8326.823-36.904-36.9040.0000.0000.0000.000
93A94THR0-0.045-0.0418.867-0.504-0.5040.0000.0000.0000.000
94A95ASP-1-0.751-0.8528.508-26.535-26.5350.0000.0000.0000.000
95A96GLY0-0.0260.0088.4240.3270.3270.0000.0000.0000.000
96A97ASP-1-0.812-0.9072.400-103.877-98.9592.698-4.066-3.551-0.050
97A98THR0-0.069-0.0432.5396.4098.3870.266-0.918-1.326-0.005
98A99GLY00.0070.0222.245-22.617-20.9995.639-3.772-3.486-0.040
99A100GLU-1-0.905-0.9563.993-25.121-25.022-0.001-0.002-0.0960.000
100A101ALA0-0.0060.0196.132-0.857-0.8570.0000.0000.0000.000
101A102SER00.0420.0039.2241.3451.3450.0000.0000.0000.000
102A103VAL0-0.053-0.01512.7150.0020.0020.0000.0000.0000.000
103A104LYS10.8880.94416.18814.83114.8310.0000.0000.0000.000
104A105LEU00.0170.01719.5400.1750.1750.0000.0000.0000.000
105A106GLU-1-0.908-0.94722.549-11.711-11.7110.0000.0000.0000.000
106A107LEU00.008-0.01025.7780.0930.0930.0000.0000.0000.000
107A0NME0-0.043-0.01129.0730.0430.0430.0000.0000.0000.000
108A109HOH0-0.004-0.02413.9960.3400.3400.0000.0000.0000.000
109A110HOH00.0280.01919.755-0.283-0.2830.0000.0000.0000.000
110A112HOH0-0.066-0.05118.2920.2920.2920.0000.0000.0000.000
111A114HOH0-0.006-0.01918.5560.2800.2800.0000.0000.0000.000
112A115HOH0-0.041-0.03410.942-0.708-0.7080.0000.0000.0000.000
113A116HOH0-0.035-0.02413.4900.6560.6560.0000.0000.0000.000
114A117HOH00.0110.01222.4010.1010.1010.0000.0000.0000.000
115A118HOH00.0100.00414.146-0.056-0.0560.0000.0000.0000.000
116A119HOH0-0.005-0.00125.3340.2410.2410.0000.0000.0000.000
117A120HOH0-0.0030.00012.6080.3290.3290.0000.0000.0000.000
118A121HOH0-0.054-0.04412.5720.5260.5260.0000.0000.0000.000
119A122HOH0-0.019-0.01715.5230.0050.0050.0000.0000.0000.000
120A123HOH00.002-0.00719.933-0.143-0.1430.0000.0000.0000.000
121A124HOH00.0320.01127.5650.0460.0460.0000.0000.0000.000
122A125HOH0-0.035-0.02913.875-0.420-0.4200.0000.0000.0000.000
123A127HOH0-0.024-0.0336.8410.8950.8950.0000.0000.0000.000
124A129HOH00.003-0.0013.5343.4023.5700.007-0.062-0.1130.000
125A130HOH00.0280.02316.5380.4300.4300.0000.0000.0000.000
126A131HOH0-0.066-0.04512.4450.0720.0720.0000.0000.0000.000
127A132HOH0-0.003-0.00917.9900.2360.2360.0000.0000.0000.000
128A133HOH0-0.003-0.01823.489-0.021-0.0210.0000.0000.0000.000
129A134HOH00.0400.02225.5170.1950.1950.0000.0000.0000.000
130A136HOH00.0340.02017.1090.0000.0000.0000.0000.0000.000
131A137HOH00.0560.03325.386-0.138-0.1380.0000.0000.0000.000
132A138HOH00.0120.00916.8070.2110.2110.0000.0000.0000.000
133A139HOH0-0.037-0.02221.452-0.189-0.1890.0000.0000.0000.000
134A140HOH0-0.003-0.00422.588-0.200-0.2000.0000.0000.0000.000
135A142HOH0-0.037-0.02416.300-0.102-0.1020.0000.0000.0000.000
136A144HOH00.0070.01316.2290.4430.4430.0000.0000.0000.000
137A145HOH00.0400.02020.305-0.257-0.2570.0000.0000.0000.000
138A146HOH0-0.024-0.01917.1300.3310.3310.0000.0000.0000.000
139A147HOH0-0.009-0.0082.621-5.920-4.3960.763-1.010-1.277-0.012
140A148HOH0-0.040-0.02210.3810.2700.2700.0000.0000.0000.000
141A149HOH00.0420.02432.883-0.015-0.0150.0000.0000.0000.000
142A150HOH0-0.010-0.01622.549-0.125-0.1250.0000.0000.0000.000
143A151HOH00.0300.02427.113-0.074-0.0740.0000.0000.0000.000
144A152HOH0-0.026-0.02212.380-0.522-0.5220.0000.0000.0000.000
145A153HOH0-0.017-0.01010.6120.0340.0340.0000.0000.0000.000
146A154HOH0-0.035-0.02218.817-0.211-0.2110.0000.0000.0000.000
147A155HOH00.0090.00823.2110.1640.1640.0000.0000.0000.000
148A156HOH00.010-0.00511.825-0.349-0.3490.0000.0000.0000.000
149A157HOH0-0.029-0.02723.030-0.054-0.0540.0000.0000.0000.000
150A158HOH00.0010.00519.8730.1500.1500.0000.0000.0000.000
151A159HOH00.0030.0076.455-2.016-2.0160.0000.0000.0000.000
152A160HOH0-0.018-0.02515.4030.2120.2120.0000.0000.0000.000
153A161HOH0-0.014-0.02427.059-0.088-0.0880.0000.0000.0000.000
154A162HOH0-0.0100.00417.8430.1000.1000.0000.0000.0000.000
155A163HOH0-0.0050.00920.9910.1090.1090.0000.0000.0000.000
156A165HOH0-0.017-0.01313.689-0.318-0.3180.0000.0000.0000.000
157A166HOH0-0.002-0.00116.134-0.049-0.0490.0000.0000.0000.000
158A167HOH0-0.028-0.01722.303-0.080-0.0800.0000.0000.0000.000
159A168HOH0-0.025-0.01421.3380.2350.2350.0000.0000.0000.000
160A169HOH0-0.018-0.01723.1540.0330.0330.0000.0000.0000.000
161A170HOH0-0.027-0.01627.0330.0340.0340.0000.0000.0000.000
162A171HOH00.0120.00422.050-0.212-0.2120.0000.0000.0000.000
163A172HOH00.0130.01026.4320.0170.0170.0000.0000.0000.000
164A173HOH0-0.001-0.00922.5150.1040.1040.0000.0000.0000.000
165A183HOH0-0.009-0.0132.575-3.863-2.7950.660-0.760-0.968-0.009
166A184HOH0-0.050-0.0387.3590.6750.6750.0000.0000.0000.000
167A186HOH00.0060.01121.572-0.265-0.2650.0000.0000.0000.000
168A187HOH0-0.020-0.02121.4050.2420.2420.0000.0000.0000.000
169A188HOH0-0.046-0.03618.268-0.109-0.1090.0000.0000.0000.000
170A190HOH00.0280.01428.026-0.167-0.1670.0000.0000.0000.000
171A192HOH00.0390.02217.6010.0820.0820.0000.0000.0000.000
172A194HOH0-0.056-0.04219.8020.3090.3090.0000.0000.0000.000
173A198HOH0-0.028-0.02622.5040.0880.0880.0000.0000.0000.000
174A199HOH0-0.014-0.00914.439-0.018-0.0180.0000.0000.0000.000
175A200HOH0-0.0010.0005.275-3.696-3.6960.0000.0000.0000.000
176A201HOH0-0.001-0.00816.8050.1170.1170.0000.0000.0000.000
177A205HOH0-0.061-0.04615.3320.1170.1170.0000.0000.0000.000
178A208HOH0-0.001-0.0116.4241.1381.1380.0000.0000.0000.000
179A209HOH0-0.018-0.01420.2430.0020.0020.0000.0000.0000.000
180A214HOH0-0.037-0.0237.519-1.037-1.0370.0000.0000.0000.000
181A217HOH00.0330.02220.416-0.251-0.2510.0000.0000.0000.000
182A218HOH0-0.013-0.0115.902-0.889-0.8890.0000.0000.0000.000
183A219HOH00.0160.00322.379-0.094-0.0940.0000.0000.0000.000
184A224HOH0-0.003-0.01019.424-0.158-0.1580.0000.0000.0000.000
185A227HOH00.0270.01629.729-0.065-0.0650.0000.0000.0000.000
186A228HOH00.0480.02921.753-0.194-0.1940.0000.0000.0000.000
187A229HOH0-0.022-0.01321.1830.2170.2170.0000.0000.0000.000
188A235HOH0-0.013-0.01830.3960.1550.1550.0000.0000.0000.000
189A237HOH0-0.036-0.02624.049-0.086-0.0860.0000.0000.0000.000
190A238HOH00.000-0.00316.5330.2100.2100.0000.0000.0000.000
191A240HOH00.0080.00018.185-0.182-0.1820.0000.0000.0000.000
192A244HOH00.0170.0229.506-0.513-0.5130.0000.0000.0000.000
193A247HOH0-0.031-0.02925.5010.0460.0460.0000.0000.0000.000
194A253HOH0-0.019-0.01125.4220.2360.2360.0000.0000.0000.000
195A254HOH0-0.034-0.01930.1870.1590.1590.0000.0000.0000.000
196A255HOH0-0.037-0.02223.3230.0950.0950.0000.0000.0000.000
197A256HOH0-0.022-0.01923.3560.0800.0800.0000.0000.0000.000
198A258HOH0-0.013-0.01527.7660.0970.0970.0000.0000.0000.000
199A261HOH0-0.034-0.02119.774-0.299-0.2990.0000.0000.0000.000
200A265HOH0-0.023-0.01235.113-0.016-0.0160.0000.0000.0000.000
201A266HOH0-0.016-0.00726.7730.0060.0060.0000.0000.0000.000
202A269HOH0-0.045-0.03524.6070.1990.1990.0000.0000.0000.000
203A270HOH00.000-0.01013.719-0.519-0.5190.0000.0000.0000.000
204A271HOH0-0.014-0.0039.7360.7450.7450.0000.0000.0000.000
205A279HOH0-0.028-0.01019.184-0.088-0.0880.0000.0000.0000.000
206A284HOH00.0410.03221.661-0.240-0.2400.0000.0000.0000.000
207A286HOH00.0400.0178.392-0.395-0.3950.0000.0000.0000.000
208A291HOH0-0.035-0.03426.755-0.173-0.1730.0000.0000.0000.000
209A293HOH0-0.033-0.02426.6290.1490.1490.0000.0000.0000.000
210A299HOH0-0.051-0.04632.8840.0500.0500.0000.0000.0000.000
211A300HOH0-0.021-0.01534.9760.0160.0160.0000.0000.0000.000
212A304HOH0-0.008-0.01220.112-0.113-0.1130.0000.0000.0000.000
213A307HOH00.006-0.00121.924-0.142-0.1420.0000.0000.0000.000
214A308HOH0-0.025-0.01120.6790.1850.1850.0000.0000.0000.000
215A309HOH0-0.045-0.02832.5010.0750.0750.0000.0000.0000.000
216A313HOH0-0.017-0.00819.6710.1380.1380.0000.0000.0000.000
217A316HOH0-0.056-0.06332.1030.0720.0720.0000.0000.0000.000
218B109HOH00.0010.00017.192-0.246-0.2460.0000.0000.0000.000
219B133HOH00.0100.00713.271-0.711-0.7110.0000.0000.0000.000
220B152HOH0-0.008-0.01111.741-0.195-0.1950.0000.0000.0000.000
221B163HOH00.0270.02014.011-0.713-0.7130.0000.0000.0000.000