FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: P7J7K

Calculation Name: 1XWT-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1XWT

Chain ID: A

ChEMBL ID:

UniProt ID: Q8RJN8

Base Structure: X-ray

Registration Date: 2018-03-01

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 403
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -7601112.739124
FMO2-HF: Nuclear repulsion 7440582.424519
FMO2-HF: Total energy -160530.314605
FMO2-MP2: Total energy -161000.653022


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:ALA)


Summations of interaction energy for fragment #1(A:1:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
11.88615.7056.552-5.208-5.164-0.073
Interaction energy analysis for fragmet #1(A:1:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.797 / q_NPA : 0.888
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ASN00.0150.0213.7931.5422.7950.000-0.495-0.7590.000
4A4ASN0-0.039-0.0186.0803.0073.0070.0000.0000.0000.000
5A5ASN0-0.012-0.0138.0324.6944.6940.0000.0000.0000.000
6A6PRO0-0.0250.00110.6430.2680.2680.0000.0000.0000.000
7A7SER00.0610.02412.2761.7321.7320.0000.0000.0000.000
8A8SER00.0200.01314.7530.0210.0210.0000.0000.0000.000
9A9VAL0-0.016-0.00217.7400.9820.9820.0000.0000.0000.000
10A10GLY00.0510.02317.453-1.049-1.0490.0000.0000.0000.000
11A11ALA00.007-0.01616.4470.3710.3710.0000.0000.0000.000
12A12TYR0-0.093-0.06118.1430.6200.6200.0000.0000.0000.000
13A13SER0-0.046-0.02521.5060.6990.6990.0000.0000.0000.000
14A14SER0-0.008-0.00117.7750.1050.1050.0000.0000.0000.000
15A15GLY00.0240.01919.5410.1510.1510.0000.0000.0000.000
16A16THR0-0.061-0.02313.033-0.577-0.5770.0000.0000.0000.000
17A17TYR00.0070.00314.550-0.068-0.0680.0000.0000.0000.000
18A18ARG10.8400.8977.94032.77832.7780.0000.0000.0000.000
19A19ASN00.0310.0128.9281.7181.7180.0000.0000.0000.000
20A20LEU00.0500.0237.293-4.821-4.8210.0000.0000.0000.000
21A21ALA00.0600.0166.616-5.285-5.2850.0000.0000.0000.000
22A22GLN0-0.013-0.0106.020-2.419-2.4190.0000.0000.0000.000
23A23GLU-1-0.802-0.8782.887-54.900-54.0920.058-0.273-0.593-0.001
24A24MET0-0.079-0.0251.942-44.039-42.4356.496-4.425-3.675-0.072
25A25GLY0-0.0080.0044.1204.7774.908-0.001-0.015-0.1150.000
26A26LYS10.8310.9285.27437.39837.421-0.0010.000-0.0220.000
27A27THR00.0480.0108.715-0.651-0.6510.0000.0000.0000.000
28A28ASN00.002-0.01111.5021.0371.0370.0000.0000.0000.000
29A29ILE0-0.0030.0098.9371.0861.0860.0000.0000.0000.000
30A30GLN00.0550.02213.5561.6771.6770.0000.0000.0000.000
31A31GLN00.0520.04116.5020.8350.8350.0000.0000.0000.000
32A32LYS10.9350.97715.25619.86119.8610.0000.0000.0000.000
33A33VAL0-0.032-0.01116.0980.5970.5970.0000.0000.0000.000
34A34ASN00.0270.00418.7670.5550.5550.0000.0000.0000.000
35A35SER00.0140.01720.9930.5730.5730.0000.0000.0000.000
36A36THR0-0.028-0.02220.3820.4460.4460.0000.0000.0000.000
37A37PHE00.0440.00722.9280.4580.4580.0000.0000.0000.000
38A38ASP-1-0.901-0.95425.095-11.401-11.4010.0000.0000.0000.000
39A39ASN0-0.054-0.02425.4050.7780.7780.0000.0000.0000.000
40A40MET0-0.0130.00726.9350.1680.1680.0000.0000.0000.000
41A41PHE0-0.006-0.03227.7070.4340.4340.0000.0000.0000.000
42A42GLY00.0810.06230.9500.2460.2460.0000.0000.0000.000
43A43TYR0-0.040-0.01832.6580.0270.0270.0000.0000.0000.000
44A44ASN00.0530.00830.9480.2340.2340.0000.0000.0000.000
45A45ASN00.0000.02334.953-0.006-0.0060.0000.0000.0000.000
46A46THR0-0.035-0.01730.9840.1090.1090.0000.0000.0000.000
47A47GLN00.033-0.01026.9290.1560.1560.0000.0000.0000.000
48A48GLN0-0.070-0.00929.965-0.096-0.0960.0000.0000.0000.000
49A49LEU0-0.021-0.01329.1250.1500.1500.0000.0000.0000.000
50A50TYR00.0230.04432.6240.2540.2540.0000.0000.0000.000
51A51TYR0-0.003-0.02634.3420.0020.0020.0000.0000.0000.000
52A52PRO0-0.0160.00738.0830.0080.0080.0000.0000.0000.000
53A53TYR0-0.031-0.04841.0170.0480.0480.0000.0000.0000.000
54A54THR0-0.022-0.02143.9840.0290.0290.0000.0000.0000.000
55A55GLU-1-0.804-0.87847.415-6.396-6.3960.0000.0000.0000.000
56A56ASN0-0.008-0.01850.9360.0730.0730.0000.0000.0000.000
57A57GLY00.0260.01851.0510.0790.0790.0000.0000.0000.000
58A58VAL0-0.032-0.00450.254-0.059-0.0590.0000.0000.0000.000
59A59TYR0-0.020-0.04140.440-0.017-0.0170.0000.0000.0000.000
60A60LYS10.8850.96345.7096.4976.4970.0000.0000.0000.000
61A61ALA00.0230.01041.504-0.057-0.0570.0000.0000.0000.000
62A62HIS00.0210.03436.9100.1580.1580.0000.0000.0000.000
63A63TYR0-0.005-0.00937.483-0.038-0.0380.0000.0000.0000.000
64A64ILE0-0.005-0.00331.864-0.093-0.0930.0000.0000.0000.000
65A65LYS10.9020.95735.0338.2098.2090.0000.0000.0000.000
66A66ALA0-0.043-0.03235.253-0.311-0.3110.0000.0000.0000.000
67A67ILE0-0.044-0.02634.7630.1940.1940.0000.0000.0000.000
68A68ASN0-0.050-0.02836.685-0.223-0.2230.0000.0000.0000.000
69A69PRO00.0210.02138.0870.2090.2090.0000.0000.0000.000
70A70ASP-1-0.919-0.95139.622-7.860-7.8600.0000.0000.0000.000
71A71GLU-1-0.964-0.98541.683-7.448-7.4480.0000.0000.0000.000
72A72GLY0-0.036-0.01743.3510.1860.1860.0000.0000.0000.000
73A73ASP-1-0.857-0.93040.616-8.078-8.0780.0000.0000.0000.000
74A74ASP-1-0.817-0.90139.602-7.915-7.9150.0000.0000.0000.000
75A75ILE0-0.0110.00338.742-0.224-0.2240.0000.0000.0000.000
76A76ARG10.8560.90436.0048.6698.6690.0000.0000.0000.000
77A77THR00.0260.00836.382-0.207-0.2070.0000.0000.0000.000
78A78GLU-1-0.842-0.85831.984-9.948-9.9480.0000.0000.0000.000
79A79GLY00.0430.01731.370-0.286-0.2860.0000.0000.0000.000
80A80GLN00.0080.00131.749-0.333-0.3330.0000.0000.0000.000
81A81SER0-0.005-0.00432.183-0.238-0.2380.0000.0000.0000.000
82A82TRP0-0.001-0.00827.577-0.383-0.3830.0000.0000.0000.000
83A83GLY00.0060.00727.774-0.429-0.4290.0000.0000.0000.000
84A84MET0-0.0080.01029.285-0.103-0.1030.0000.0000.0000.000
85A85THR0-0.006-0.01425.158-0.202-0.2020.0000.0000.0000.000
86A86ALA0-0.029-0.02524.607-0.422-0.4220.0000.0000.0000.000
87A87ALA00.0250.01525.325-0.341-0.3410.0000.0000.0000.000
88A88VAL00.0060.01126.948-0.143-0.1430.0000.0000.0000.000
89A89MET0-0.071-0.01322.094-0.335-0.3350.0000.0000.0000.000
90A90LEU0-0.034-0.01720.744-0.561-0.5610.0000.0000.0000.000
91A91ASN0-0.047-0.01324.3650.2540.2540.0000.0000.0000.000
92A92LYS10.9110.97326.53411.75311.7530.0000.0000.0000.000
93A93GLN00.0620.02129.7900.0080.0080.0000.0000.0000.000
94A94GLU-1-0.862-0.92833.099-8.146-8.1460.0000.0000.0000.000
95A95GLU-1-0.924-0.96831.602-9.840-9.8400.0000.0000.0000.000
96A96PHE0-0.025-0.02730.9350.0820.0820.0000.0000.0000.000
97A97ASP-1-0.759-0.85133.503-8.579-8.5790.0000.0000.0000.000
98A98ASN00.013-0.00336.9850.4220.4220.0000.0000.0000.000
99A99LEU0-0.043-0.01532.6050.1730.1730.0000.0000.0000.000
100A100TRP0-0.011-0.02336.4570.1050.1050.0000.0000.0000.000
101A101ARG10.7930.87437.9877.9067.9060.0000.0000.0000.000
102A102PHE0-0.009-0.00339.8040.2140.2140.0000.0000.0000.000
103A103ALA00.0050.00338.4600.1560.1560.0000.0000.0000.000
104A104LYS10.8580.92440.6167.5997.5990.0000.0000.0000.000
105A105ALA0-0.0240.00043.0510.1780.1780.0000.0000.0000.000
106A106TYR0-0.012-0.01644.0240.1430.1430.0000.0000.0000.000
107A107GLN00.030-0.00238.240-0.020-0.0200.0000.0000.0000.000
108A108LYS10.8400.93843.4256.9736.9730.0000.0000.0000.000
109A109ASN0-0.033-0.02444.8100.2550.2550.0000.0000.0000.000
110A110PRO00.011-0.00247.808-0.060-0.0600.0000.0000.0000.000
111A111ASP-1-0.789-0.91248.503-6.747-6.7470.0000.0000.0000.000
112A112ASN0-0.035-0.01450.947-0.049-0.0490.0000.0000.0000.000
113A113HIS00.0050.01251.3860.1610.1610.0000.0000.0000.000
114A114PRO00.0350.01353.7570.0070.0070.0000.0000.0000.000
115A115ASP-1-0.819-0.88452.303-6.247-6.2470.0000.0000.0000.000
116A116ALA00.0550.00652.053-0.123-0.1230.0000.0000.0000.000
117A117LYS10.9080.95548.5986.2356.2350.0000.0000.0000.000
118A118LYS10.8830.94847.4056.3166.3160.0000.0000.0000.000
119A119GLN0-0.104-0.04447.721-0.156-0.1560.0000.0000.0000.000
120A120GLY00.0440.02546.354-0.085-0.0850.0000.0000.0000.000
121A121VAL0-0.068-0.01742.895-0.201-0.2010.0000.0000.0000.000
122A122TYR0-0.020-0.03040.1120.1310.1310.0000.0000.0000.000
123A123ALA0-0.0050.00341.632-0.113-0.1130.0000.0000.0000.000
124A124TRP0-0.073-0.04338.482-0.250-0.2500.0000.0000.0000.000
125A125LYS10.9330.98239.8997.3967.3960.0000.0000.0000.000
126A126LEU0-0.009-0.00942.2260.2180.2180.0000.0000.0000.000
127A127LYS10.9260.96443.2716.9376.9370.0000.0000.0000.000
128A128LEU0-0.0040.00944.7060.0710.0710.0000.0000.0000.000
129A129ASN00.0230.01147.405-0.009-0.0090.0000.0000.0000.000
130A130GLN00.0420.00950.704-0.125-0.1250.0000.0000.0000.000
131A131ASN0-0.043-0.02552.9890.0660.0660.0000.0000.0000.000
132A132GLY00.0070.01949.5110.0100.0100.0000.0000.0000.000
133A133PHE0-0.027-0.01349.091-0.099-0.0990.0000.0000.0000.000
134A134VAL0-0.0010.00045.111-0.022-0.0220.0000.0000.0000.000
135A135TYR0-0.040-0.02047.8220.1310.1310.0000.0000.0000.000
136A136LYS10.9340.96746.5246.6376.6370.0000.0000.0000.000
137A137VAL0-0.050-0.02045.8370.1440.1440.0000.0000.0000.000
138A138ASP-1-0.823-0.91744.784-7.003-7.0030.0000.0000.0000.000
139A139GLU-1-0.840-0.92645.259-6.511-6.5110.0000.0000.0000.000
140A140GLY0-0.0090.00945.145-0.031-0.0310.0000.0000.0000.000
141A141PRO00.0280.01440.666-0.070-0.0700.0000.0000.0000.000
142A142ALA00.0370.01736.4860.0290.0290.0000.0000.0000.000
143A143PRO0-0.004-0.00336.690-0.217-0.2170.0000.0000.0000.000
144A144ASH0-0.026-0.06731.334-0.291-0.2910.0000.0000.0000.000
145A145GLY0-0.015-0.00532.526-0.285-0.2850.0000.0000.0000.000
146A146GLU-1-0.774-0.90834.314-8.441-8.4410.0000.0000.0000.000
147A147GLU-1-0.842-0.91631.893-10.111-10.1110.0000.0000.0000.000
148A148TYR0-0.007-0.02325.689-0.497-0.4970.0000.0000.0000.000
149A149PHE00.0200.00731.123-0.130-0.1300.0000.0000.0000.000
150A150ALA00.0010.00333.9460.0140.0140.0000.0000.0000.000
151A151PHE0-0.017-0.00324.773-0.086-0.0860.0000.0000.0000.000
152A152ALA00.0130.00729.631-0.172-0.1720.0000.0000.0000.000
153A153LEU00.0040.00230.628-0.039-0.0390.0000.0000.0000.000
154A154LEU0-0.020-0.00531.8710.1150.1150.0000.0000.0000.000
155A155ASN00.016-0.00527.075-0.320-0.3200.0000.0000.0000.000
156A156ALA00.0320.02430.000-0.079-0.0790.0000.0000.0000.000
157A157SER0-0.029-0.01832.2730.2370.2370.0000.0000.0000.000
158A158ALA0-0.044-0.01330.3050.1180.1180.0000.0000.0000.000
159A159ARG10.8090.91324.77712.16112.1610.0000.0000.0000.000
160A160TRP0-0.015-0.01929.8970.0180.0180.0000.0000.0000.000
161A161GLY00.0110.03134.1220.2620.2620.0000.0000.0000.000
162A162ASN0-0.040-0.05537.031-0.067-0.0670.0000.0000.0000.000
163A163SER00.0070.00040.0620.1190.1190.0000.0000.0000.000
164A164GLY00.0140.02441.2200.1450.1450.0000.0000.0000.000
165A165GLU-1-0.791-0.86941.565-7.478-7.4780.0000.0000.0000.000
166A166PHE0-0.009-0.00439.2370.1470.1470.0000.0000.0000.000
167A167ASN00.0250.01440.610-0.256-0.2560.0000.0000.0000.000
168A168TYR00.001-0.05136.0860.0310.0310.0000.0000.0000.000
169A169TYR0-0.026-0.02836.5180.0150.0150.0000.0000.0000.000
170A170ASN00.007-0.01338.483-0.102-0.1020.0000.0000.0000.000
171A171ASP-1-0.819-0.89839.493-7.656-7.6560.0000.0000.0000.000
172A172ALA00.0130.00536.004-0.022-0.0220.0000.0000.0000.000
173A173ILE0-0.015-0.00637.824-0.030-0.0300.0000.0000.0000.000
174A174THR0-0.038-0.01240.1650.1660.1660.0000.0000.0000.000
175A175MET0-0.0160.00337.0190.1260.1260.0000.0000.0000.000
176A176LEU0-0.021-0.01535.012-0.010-0.0100.0000.0000.0000.000
177A177ASN00.0070.00138.937-0.052-0.0520.0000.0000.0000.000
178A178THR0-0.016-0.00341.8020.1840.1840.0000.0000.0000.000
179A179ILE00.0070.00535.8920.0590.0590.0000.0000.0000.000
180A180LYS10.8870.95240.1247.6617.6610.0000.0000.0000.000
181A181ASN0-0.036-0.03241.7330.1070.1070.0000.0000.0000.000
182A182LYS10.8310.93243.8086.8516.8510.0000.0000.0000.000
183A183LEU0-0.029-0.00739.3080.0200.0200.0000.0000.0000.000
184A184MET0-0.0130.01935.981-0.252-0.2520.0000.0000.0000.000
185A185GLU-1-0.826-0.91040.896-7.088-7.0880.0000.0000.0000.000
186A186ASN0-0.010-0.01241.192-0.114-0.1140.0000.0000.0000.000
187A187GLN0-0.059-0.04038.332-0.118-0.1180.0000.0000.0000.000
188A188ILE00.0110.01235.873-0.347-0.3470.0000.0000.0000.000
189A189ILE00.0350.01633.8270.3040.3040.0000.0000.0000.000
190A190ARG10.8350.92037.0967.3067.3060.0000.0000.0000.000
191A191PHE00.0250.01337.368-0.120-0.1200.0000.0000.0000.000
192A192SER00.0560.01539.3900.0850.0850.0000.0000.0000.000
193A193PRO00.013-0.00142.9550.0280.0280.0000.0000.0000.000
194A194TYR0-0.084-0.07545.6120.0840.0840.0000.0000.0000.000
195A195ILE0-0.0220.00444.2210.1300.1300.0000.0000.0000.000
196A196ASP-1-0.813-0.88944.800-7.009-7.0090.0000.0000.0000.000
197A197ASN0-0.052-0.04742.521-0.191-0.1910.0000.0000.0000.000
198A198LEU0-0.012-0.01139.733-0.056-0.0560.0000.0000.0000.000
199A199THR0-0.005-0.01135.024-0.117-0.1170.0000.0000.0000.000
200A200ASP-1-0.716-0.82632.576-9.790-9.7900.0000.0000.0000.000
201A201PRO0-0.008-0.01130.088-0.181-0.1810.0000.0000.0000.000
202A202SER0-0.071-0.05228.389-0.376-0.3760.0000.0000.0000.000
203A203TYR0-0.025-0.02929.108-0.158-0.1580.0000.0000.0000.000
204A204HIS00.0130.04929.446-0.148-0.1480.0000.0000.0000.000
205A205ILE00.0130.00625.017-0.613-0.6130.0000.0000.0000.000
206A206PRO0-0.045-0.03425.6170.1250.1250.0000.0000.0000.000
207A207ALA00.0340.01123.8050.2930.2930.0000.0000.0000.000
208A208PHE00.0010.00324.7650.0050.0050.0000.0000.0000.000
209A209TYR0-0.029-0.02028.1770.2220.2220.0000.0000.0000.000
210A210ASP-1-0.784-0.90827.576-11.138-11.1380.0000.0000.0000.000
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