FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: P8KYX

Calculation Name: 2R0U-A-Xray10

Preferred Name: Serine/threonine-protein kinase Chk1

Target Type: SINGLE PROTEIN

Ligand Name: 6-(3-aminopropyl)-4-(3-hydroxyphenyl)-9-(1h-pyrazol-4-yl)benzo[h]isoquinolin-1(2h)-one

ligand 3-letter code: M54

PDB ID: 2R0U

Chain ID: A

ChEMBL ID: CHEMBL4630

UniProt ID: O14757

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 262
LigandResidueName M54
LigandFragmentNumber 262
LigandCharge M54=1
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3748161.486175
FMO2-HF: Nuclear repulsion 3640540.331002
FMO2-HF: Total energy -107621.155174
FMO2-MP2: Total energy -107933.707376


3D Structure
Snapshot
 
Ligand structure

M54

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-363.577-341.041106.335-46.897-81.9710.153


Interactive mode: IFIE and PIEDA for fragment #262(A:324:M54)


Summations of interaction energy for fragment #262(A:324:M54)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-363.577-341.041106.335-46.897-81.971-0.153
Interaction energy analysis for fragmet #262(A:324:M54)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.847 / q_NPA : 0.909
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A9TRP10.7690.87010.83314.50814.5080.0000.0000.0000.000
2A10ASP-1-0.821-0.90114.432-13.110-13.1100.0000.0000.0000.000
3A11LEU0-0.038-0.01610.446-0.567-0.5670.0000.0000.0000.000
4A12VAL0-0.004-0.01510.2220.5100.5100.0000.0000.0000.000
5A13GLN00.0060.0015.7570.0230.0230.0000.0000.0000.000
6A14THR0-0.036-0.0296.8950.1220.1220.0000.0000.0000.000
7A15LEU0-0.079-0.0292.550-7.262-1.0093.671-2.250-7.6750.024
8A16GLY00.0340.0072.508-12.993-10.3042.265-1.602-3.351-0.007
9A17GLU-1-0.941-0.9643.532-20.487-20.4950.0070.309-0.3070.000
10A18GLY00.0540.0286.178-1.612-1.6120.0000.0000.0000.000
11A19ALA0-0.040-0.0077.847-1.236-1.2360.0000.0000.0000.000
12A20TYR0-0.051-0.0525.4934.5334.5330.0000.0000.0000.000
13A21GLY0-0.0150.0008.7980.4070.4070.0000.0000.0000.000
14A22GLU-1-0.836-0.8816.116-25.389-25.3890.0000.0000.0000.000
15A23VAL0-0.028-0.0172.063-3.3360.4514.897-2.072-6.6130.005
16A24GLN00.0720.0254.953-0.0500.191-0.001-0.010-0.2290.000
17A25LEU00.0150.0195.777-0.478-0.4780.0000.0000.0000.000
18A26ALA0-0.045-0.0306.8711.1711.1710.0000.0000.0000.000
19A27VAL00.0630.0289.501-0.329-0.3290.0000.0000.0000.000
20A28ASN0-0.061-0.02512.1841.1031.1030.0000.0000.0000.000
21A29ARG10.9930.98814.55411.06511.0650.0000.0000.0000.000
22A30VAL0-0.073-0.03818.1540.3980.3980.0000.0000.0000.000
23A31THR0-0.009-0.05615.3220.1500.1500.0000.0000.0000.000
24A32GLU-1-0.940-0.95014.839-12.535-12.5350.0000.0000.0000.000
25A33GLU-1-0.896-0.90711.497-14.613-14.6130.0000.0000.0000.000
26A34ALA00.0110.0007.6130.0060.0060.0000.0000.0000.000
27A35VAL0-0.056-0.0355.668-0.330-0.3300.0000.0000.0000.000
28A36ALA00.0220.0222.886-1.3870.4152.519-1.178-3.1430.005
29A37VAL0-0.042-0.0344.020-0.5360.0580.003-0.134-0.4630.000
30A38LYS10.8860.9741.95329.63828.2759.861-3.005-5.4930.027
31A39ILE0-0.014-0.0223.9761.6081.8440.004-0.083-0.1570.000
32A40VAL00.0030.0046.433-0.765-0.7650.0000.0000.0000.000
33A41ASP-1-0.837-0.9229.028-14.580-14.5800.0000.0000.0000.000
34A42MET0-0.0070.03012.5820.1070.1070.0000.0000.0000.000
35A43LYS10.7600.84213.81514.77014.7700.0000.0000.0000.000
36A44ARG10.9580.97216.13914.68014.6800.0000.0000.0000.000
37A45ALA00.0700.04113.271-0.163-0.1630.0000.0000.0000.000
38A46VAL0-0.0250.0009.9140.4820.4820.0000.0000.0000.000
39A47ASP-1-0.825-0.88813.159-13.945-13.9450.0000.0000.0000.000
40A48CYS0-0.091-0.09713.070-0.671-0.6710.0000.0000.0000.000
41A49PRO0-0.046-0.03012.882-0.717-0.7170.0000.0000.0000.000
42A50GLU-1-0.844-0.91113.581-17.766-17.7660.0000.0000.0000.000
43A51ASN00.0180.0097.992-0.684-0.6840.0000.0000.0000.000
44A52ILE00.0930.0636.905-0.458-0.4580.0000.0000.0000.000
45A53LYS10.9320.9588.48614.77014.7700.0000.0000.0000.000
46A54LYS10.9550.98410.53518.17718.1770.0000.0000.0000.000
47A55GLU-1-0.795-0.9062.356-34.313-32.6541.718-1.293-2.084-0.025
48A56ILE0-0.0260.0057.1970.0330.0330.0000.0000.0000.000
49A57CYS0-0.122-0.0808.5160.8560.8560.0000.0000.0000.000
50A58ILE00.0410.0159.6790.7540.7540.0000.0000.0000.000
51A59ASN00.020-0.0054.926-0.101-0.1010.0000.0000.0000.000
52A60LYS10.8650.9488.95616.20216.2020.0000.0000.0000.000
53A61MET0-0.066-0.02412.0850.7520.7520.0000.0000.0000.000
54A62LEU0-0.065-0.0179.2890.6100.6100.0000.0000.0000.000
55A63ASN0-0.022-0.02311.936-0.655-0.6550.0000.0000.0000.000
56A64HIS00.0530.03111.9640.1150.1150.0000.0000.0000.000
57A65GLU-1-0.972-0.98011.513-16.871-16.8710.0000.0000.0000.000
58A66ASN0-0.004-0.01211.3240.5120.5120.0000.0000.0000.000
59A67VAL0-0.060-0.0248.891-1.641-1.6410.0000.0000.0000.000
60A68VAL0-0.0130.0072.4930.2221.3170.536-0.371-1.2590.001
61A69LYS10.9420.9765.79920.39120.3910.0000.0000.0000.000
62A70PHE00.0070.0055.504-1.279-1.2790.0000.0000.0000.000
63A71TYR0-0.009-0.0176.5081.1031.1030.0000.0000.0000.000
64A72GLY0-0.020-0.0138.1741.4751.4750.0000.0000.0000.000
65A73HIS0-0.062-0.0417.712-0.719-0.7190.0000.0000.0000.000
66A74ARG10.9550.9849.40213.93313.9330.0000.0000.0000.000
67A75ARG10.9230.95211.27412.09612.0960.0000.0000.0000.000
68A76GLU-1-0.884-0.93713.586-13.686-13.6860.0000.0000.0000.000
69A77GLY00.0290.02715.867-0.049-0.0490.0000.0000.0000.000
70A78ASN0-0.014-0.02115.999-0.146-0.1460.0000.0000.0000.000
71A79ILE00.0420.03611.479-0.511-0.5110.0000.0000.0000.000
72A80GLN0-0.0060.0138.5940.8640.8640.0000.0000.0000.000
73A81TYR00.0340.0247.440-1.101-1.1010.0000.0000.0000.000
74A82LEU0-0.029-0.0203.0960.6751.3550.049-0.123-0.6060.000
75A83PHE0-0.0030.0084.413-1.300-1.0040.000-0.026-0.2690.000
76A84LEU00.0140.0022.1152.867-2.25312.823-2.212-5.4910.005
77A85GLU-1-0.754-0.8814.071-25.673-24.2400.003-0.657-0.779-0.002
78A86TYR00.0090.0261.642-26.427-31.46023.750-10.211-8.506-0.044
79A87CYS0-0.043-0.0241.722-6.130-14.07818.116-5.638-4.5310.042
80A88SER00.027-0.0102.241-7.549-6.2004.520-1.958-3.911-0.025
81A89GLY00.0400.0402.118-10.973-9.3863.716-2.440-2.863-0.038
82A90GLY00.0300.0142.733-0.2841.6193.391-2.173-3.1210.007
83A91GLU-1-0.846-0.9492.255-92.185-87.8262.795-1.838-5.316-0.055
84A92LEU0-0.005-0.0095.8064.6704.6700.0000.0000.0000.000
85A93PHE0-0.048-0.0326.7193.8983.8980.0000.0000.0000.000
86A94ASP-1-0.871-0.9375.697-33.356-33.3560.0000.0000.0000.000
87A95ARG10.7260.8616.57426.52526.5250.0000.0000.0000.000
88A96ILE0-0.068-0.02211.1451.9021.9020.0000.0000.0000.000
89A97GLU-1-0.899-0.94714.086-16.111-16.1110.0000.0000.0000.000
90A98PRO0-0.008-0.02014.9020.5450.5450.0000.0000.0000.000
91A99ASP-1-0.946-0.98617.775-13.528-13.5280.0000.0000.0000.000
92A100ILE0-0.054-0.00919.7500.9490.9490.0000.0000.0000.000
93A101GLY0-0.026-0.01017.4500.2860.2860.0000.0000.0000.000
94A102MET0-0.029-0.00413.945-0.600-0.6000.0000.0000.0000.000
95A103PRO00.0170.00917.9320.6590.6590.0000.0000.0000.000
96A104GLU-1-0.811-0.91320.253-12.944-12.9440.0000.0000.0000.000
97A105PRO00.0250.00221.388-0.401-0.4010.0000.0000.0000.000
98A106ASP-1-0.862-0.91916.389-16.120-16.1200.0000.0000.0000.000
99A107ALA00.027-0.00217.067-0.956-0.9560.0000.0000.0000.000
100A108GLN0-0.092-0.06917.820-0.744-0.7440.0000.0000.0000.000
101A109ARG10.9140.97313.69317.65217.6520.0000.0000.0000.000
102A110PHE00.016-0.00912.171-0.640-0.6400.0000.0000.0000.000
103A111PHE00.015-0.00715.049-0.763-0.7630.0000.0000.0000.000
104A112HIS0-0.053-0.04416.913-0.328-0.3280.0000.0000.0000.000
105A113GLN00.0070.01214.527-1.021-1.0210.0000.0000.0000.000
106A114LEU00.0340.02211.478-0.397-0.3970.0000.0000.0000.000
107A115MET0-0.035-0.02014.3710.4060.4060.0000.0000.0000.000
108A116ALA0-0.0200.00317.1520.5440.5440.0000.0000.0000.000
109A117GLY00.0460.02013.6860.4130.4130.0000.0000.0000.000
110A118VAL00.004-0.01113.8440.1770.1770.0000.0000.0000.000
111A119VAL0-0.042-0.02215.4110.9450.9450.0000.0000.0000.000
112A120TYR00.0080.01014.0960.9660.9660.0000.0000.0000.000
113A121LEU00.0090.00510.9380.5820.5820.0000.0000.0000.000
114A122HIS0-0.031-0.03915.2791.4221.4220.0000.0000.0000.000
115A123GLY0-0.0100.00218.2330.8470.8470.0000.0000.0000.000
116A124ILE0-0.061-0.02214.9050.6990.6990.0000.0000.0000.000
117A125GLY0-0.039-0.01418.8070.1480.1480.0000.0000.0000.000
118A126ILE0-0.012-0.01612.4290.0520.0520.0000.0000.0000.000
119A127THR0-0.046-0.04514.605-0.022-0.0220.0000.0000.0000.000
120A128HIS00.012-0.0146.1434.2534.2530.0000.0000.0000.000
121A129ARG10.8130.88110.37018.85918.8590.0000.0000.0000.000
122A130ASP-1-0.796-0.8867.860-35.519-35.5190.0000.0000.0000.000
123A131ILE00.0100.0147.897-5.094-5.0940.0000.0000.0000.000
124A132LYS10.9110.9405.53146.06946.0690.0000.0000.0000.000
125A133PRO00.0160.0096.518-4.321-4.3210.0000.0000.0000.000
126A134GLU-1-0.775-0.8843.397-43.929-43.3070.009-0.268-0.363-0.001
127A135ASN0-0.097-0.0451.956-60.748-56.9875.166-4.761-4.167-0.066
128A136LEU0-0.063-0.0193.5219.4329.6180.003-0.002-0.1870.000
129A137LEU00.0290.0082.330-5.584-1.3853.165-1.681-5.682-0.006
130A138LEU00.0000.0126.0053.9913.9910.0000.0000.0000.000
131A139ASP-1-0.809-0.9125.436-21.455-21.4550.0000.0000.0000.000
132A140GLU-1-0.859-0.9417.221-19.730-19.7300.0000.0000.0000.000
133A141ARG10.8540.9298.11616.28816.2880.0000.0000.0000.000
134A142ASP-1-0.773-0.8739.140-20.280-20.2800.0000.0000.0000.000
135A143ASN0-0.123-0.05610.4780.7750.7750.0000.0000.0000.000
136A144LEU00.0240.0139.922-1.525-1.5250.0000.0000.0000.000
137A145LYS10.8010.9036.87425.42725.4270.0000.0000.0000.000
138A146ILE0-0.0040.0087.590-4.212-4.2120.0000.0000.0000.000
139A147SER0-0.030-0.0222.698-5.883-4.2490.355-0.631-1.3590.002
140A148ASP-1-0.838-0.9232.224-55.353-52.4022.678-2.166-3.462-0.003
141A149PHE00.020-0.0042.9375.4364.1280.3161.577-0.5840.001
142A150GLY0-0.0020.0075.3333.7083.7080.0000.0000.0000.000
143A151LEU00.0200.0066.9453.3673.3670.0000.0000.0000.000
144A152ALA00.0470.0599.1801.9451.9450.0000.0000.0000.000
145A153THR0-0.099-0.07110.9341.5421.5420.0000.0000.0000.000
146A154VAL00.0250.03414.423-0.106-0.1060.0000.0000.0000.000
147A155PHE00.0050.01617.3990.3960.3960.0000.0000.0000.000
148A156ARG10.9110.97419.98713.54413.5440.0000.0000.0000.000
149A157TYR00.0310.00920.990-0.116-0.1160.0000.0000.0000.000
150A158ASN00.0040.00023.6050.2400.2400.0000.0000.0000.000
151A159ASN0-0.028-0.01926.1060.0450.0450.0000.0000.0000.000
152A160ARG10.9530.99026.8989.7379.7370.0000.0000.0000.000
153A161GLU-1-0.859-0.91323.919-12.429-12.4290.0000.0000.0000.000
154A162ARG10.8060.88318.29514.44614.4460.0000.0000.0000.000
155A163LEU00.0190.01522.969-0.539-0.5390.0000.0000.0000.000
156A164LEU0-0.057-0.02417.963-0.155-0.1550.0000.0000.0000.000
157A165ASN00.017-0.00721.7940.1190.1190.0000.0000.0000.000
158A166LYS10.8560.90615.31717.76417.7640.0000.0000.0000.000
159A167MET0-0.0050.01619.052-0.446-0.4460.0000.0000.0000.000
160A168CYS0-0.091-0.05413.631-0.791-0.7910.0000.0000.0000.000
161A169GLY00.1020.06611.8150.8870.8870.0000.0000.0000.000
162A170THR0-0.017-0.0219.697-0.975-0.9750.0000.0000.0000.000
163A171LEU00.008-0.00712.1790.4420.4420.0000.0000.0000.000
164A172PRO00.0650.03813.4020.7060.7060.0000.0000.0000.000
165A173TYR00.0560.01210.3910.7170.7170.0000.0000.0000.000
166A174VAL0-0.070-0.02114.2110.3900.3900.0000.0000.0000.000
167A175ALA00.0470.01816.4890.7260.7260.0000.0000.0000.000
168A176PRO00.0310.02119.7680.1370.1370.0000.0000.0000.000
169A177GLU-1-0.778-0.90922.521-13.642-13.6420.0000.0000.0000.000
170A178LEU0-0.0320.01317.7430.4580.4580.0000.0000.0000.000
171A179LEU00.0110.00120.1800.1270.1270.0000.0000.0000.000
172A180LYS10.8790.96023.56612.44512.4450.0000.0000.0000.000
173A181ARG10.8730.93826.14011.30111.3010.0000.0000.0000.000
174A182ARG10.9650.98826.17310.29110.2910.0000.0000.0000.000
175A183GLU-1-0.948-0.98325.459-11.099-11.0990.0000.0000.0000.000
176A184PHE0-0.009-0.01119.7560.2090.2090.0000.0000.0000.000
177A185HIS0-0.013-0.02223.3860.0340.0340.0000.0000.0000.000
178A186ALA00.012-0.00918.276-0.396-0.3960.0000.0000.0000.000
179A187GLU-1-0.881-0.95118.956-14.169-14.1690.0000.0000.0000.000
180A188PRO00.0110.00219.782-0.634-0.6340.0000.0000.0000.000
181A189VAL00.0290.02616.543-0.202-0.2020.0000.0000.0000.000
182A190ASP-1-0.695-0.82314.179-21.978-21.9780.0000.0000.0000.000
183A191VAL0-0.028-0.00915.912-0.707-0.7070.0000.0000.0000.000
184A192TRP00.0180.00517.1410.3640.3640.0000.0000.0000.000
185A193SER0-0.0090.01112.782-0.552-0.5520.0000.0000.0000.000
186A194CYS0-0.024-0.00313.973-1.221-1.2210.0000.0000.0000.000
187A195GLY00.0260.01315.0510.1960.1960.0000.0000.0000.000
188A196ILE0-0.030-0.00814.3330.4020.4020.0000.0000.0000.000
189A197VAL00.0350.01110.747-0.368-0.3680.0000.0000.0000.000
190A198LEU0-0.046-0.01513.4680.1220.1220.0000.0000.0000.000
191A199THR0-0.012-0.02216.7140.9060.9060.0000.0000.0000.000
192A200ALA00.0080.01413.6720.5640.5640.0000.0000.0000.000
193A201MET0-0.033-0.01513.7180.0890.0890.0000.0000.0000.000
194A202LEU0-0.022-0.01815.9780.7320.7320.0000.0000.0000.000
195A203ALA00.0110.02018.8570.7770.7770.0000.0000.0000.000
196A204GLY00.0530.04116.6380.4900.4900.0000.0000.0000.000
197A205GLU-1-0.880-0.93917.277-14.545-14.5450.0000.0000.0000.000
198A206LEU0-0.032-0.02312.990-0.183-0.1830.0000.0000.0000.000
199A207PRO00.004-0.00317.1930.6770.6770.0000.0000.0000.000
200A208TRP00.0290.00119.2571.1751.1750.0000.0000.0000.000
201A209ASP-1-0.847-0.91018.399-16.738-16.7380.0000.0000.0000.000
202A210GLN0-0.071-0.06118.045-1.323-1.3230.0000.0000.0000.000
203A211PRO0-0.0150.02519.3050.8750.8750.0000.0000.0000.000
204A212SER0-0.008-0.02322.3620.4860.4860.0000.0000.0000.000
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