Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: P8N1Y

Calculation Name: 1QVE-A-Xray41

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1QVE

Chain ID: A

ChEMBL ID:

UniProt ID: P17838

Base Structure: X-ray

Registration Date: 2019-02-15

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 229
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1137278.970134
FMO2-HF: Nuclear repulsion 1083191.611495
FMO2-HF: Total energy -54087.358639
FMO2-MP2: Total energy -54238.652654


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:25:ILE)


Summations of interaction energy for fragment #1(A:25:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-15.729-8.76810.743-6.271-11.431-0.021
Interaction energy analysis for fragmet #1(A:25:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.031 / q_NPA : 0.016
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A27GLU-1-0.702-0.8733.550-5.542-2.781-0.003-1.188-1.5700.005
4A28PHE0-0.0010.0205.0730.7700.881-0.001-0.004-0.1060.000
5A29ALA00.000-0.0115.1910.4270.4270.0000.0000.0000.000
6A30ARG10.8430.9212.6431.2412.5232.112-0.856-2.537-0.007
7A31ALA00.0590.0356.2510.3240.3240.0000.0000.0000.000
8A32GLN0-0.0060.0069.4140.2900.2900.0000.0000.0000.000
9A33LEU00.0320.0008.3010.1110.1110.0000.0000.0000.000
10A34SER0-0.0200.0009.9910.0640.0640.0000.0000.0000.000
11A35GLU-1-0.764-0.88212.273-0.216-0.2160.0000.0000.0000.000
12A36ALA00.0280.00214.3330.0460.0460.0000.0000.0000.000
13A37MET00.0120.01314.4910.0470.0470.0000.0000.0000.000
14A38THR0-0.027-0.00216.2980.0210.0210.0000.0000.0000.000
15A39LEU00.0400.02518.4900.0220.0220.0000.0000.0000.000
16A40ALA00.0170.01919.4510.0190.0190.0000.0000.0000.000
17A41SER0-0.009-0.03219.3410.0170.0170.0000.0000.0000.000
18A42GLY00.0040.02121.9380.0080.0080.0000.0000.0000.000
19A43LEU00.0310.02124.6070.0070.0070.0000.0000.0000.000
20A44LYS10.8510.92622.2140.1300.1300.0000.0000.0000.000
21A45THR00.011-0.00326.8650.0090.0090.0000.0000.0000.000
22A46LYS10.9530.99030.0900.0840.0840.0000.0000.0000.000
23A47VAL00.0280.01328.4010.0070.0070.0000.0000.0000.000
24A48SER0-0.0350.00130.3600.0060.0060.0000.0000.0000.000
25A49ASP-1-0.718-0.80832.018-0.050-0.0500.0000.0000.0000.000
26A50ILE00.0310.02934.0850.0030.0030.0000.0000.0000.000
27A51PHE0-0.017-0.00233.4920.0040.0040.0000.0000.0000.000
28A52SER0-0.048-0.02335.5530.0030.0030.0000.0000.0000.000
29A53GLN0-0.0190.00337.6250.0040.0040.0000.0000.0000.000
30A54ASP-1-0.769-0.87539.288-0.012-0.0120.0000.0000.0000.000
31A55GLY0-0.0190.01138.3650.0040.0040.0000.0000.0000.000
32A56SER0-0.013-0.01037.2530.0050.0050.0000.0000.0000.000
33A93CYS0-0.049-0.00928.8010.0030.0030.0000.0000.0000.000
34A58PRO00.0520.05031.7980.0040.0040.0000.0000.0000.000
35A59ALA00.0470.02231.6840.0020.0020.0000.0000.0000.000
36A60ASN00.0080.02228.0150.0080.0080.0000.0000.0000.000
37A61THR00.0500.03230.634-0.005-0.0050.0000.0000.0000.000
38A62ALA00.0050.02132.039-0.001-0.0010.0000.0000.0000.000
39A63ALA00.0220.02234.2780.0000.0000.0000.0000.0000.000
40A64THR00.0350.01234.1630.0040.0040.0000.0000.0000.000
41A65ALA00.0470.02336.104-0.005-0.0050.0000.0000.0000.000
42A66GLY00.0550.02635.9900.0010.0010.0000.0000.0000.000
43A67ILE0-0.0340.00230.178-0.009-0.0090.0000.0000.0000.000
44A68GLU-1-0.862-0.91930.406-0.048-0.0480.0000.0000.0000.000
45A69LYS10.9630.97530.8890.0130.0130.0000.0000.0000.000
46A70ASP-1-0.704-0.82626.5460.0010.0010.0000.0000.0000.000
47A71THR0-0.052-0.03626.430-0.010-0.0100.0000.0000.0000.000
48A72ASP-1-0.804-0.87727.414-0.051-0.0510.0000.0000.0000.000
49A73ILE0-0.048-0.00924.089-0.015-0.0150.0000.0000.0000.000
50A74ASN0-0.051-0.02722.542-0.007-0.0070.0000.0000.0000.000
51A75GLY00.0730.02920.110-0.016-0.0160.0000.0000.0000.000
52A76LYS10.8990.96317.0480.3910.3910.0000.0000.0000.000
53A77TYR0-0.030-0.04614.599-0.013-0.0130.0000.0000.0000.000
54A78VAL00.0200.02516.6960.0450.0450.0000.0000.0000.000
55A79ALA0-0.007-0.01518.660-0.007-0.0070.0000.0000.0000.000
56A80LYS10.9220.97621.520-0.044-0.0440.0000.0000.0000.000
57A81VAL0-0.008-0.00321.3530.0030.0030.0000.0000.0000.000
58A82THR0-0.025-0.02423.709-0.001-0.0010.0000.0000.0000.000
59A83THR0-0.046-0.02325.4270.0020.0020.0000.0000.0000.000
60A84GLY00.0740.02927.9860.0050.0050.0000.0000.0000.000
61A85GLY00.0120.03628.971-0.006-0.0060.0000.0000.0000.000
62A86THR0-0.015-0.00229.511-0.003-0.0030.0000.0000.0000.000
63A87ALA00.0780.04532.1020.0010.0010.0000.0000.0000.000
64A88ALA00.0130.01733.1890.0060.0060.0000.0000.0000.000
65A89ALA00.0810.04135.094-0.005-0.0050.0000.0000.0000.000
66A90SER00.0430.05131.737-0.005-0.0050.0000.0000.0000.000
67A91GLY00.0050.00530.962-0.005-0.0050.0000.0000.0000.000
68A92GLY00.0230.01529.0940.0030.0030.0000.0000.0000.000
69A94THR00.015-0.01924.443-0.005-0.0050.0000.0000.0000.000
70A95ILE0-0.0080.00722.801-0.004-0.0040.0000.0000.0000.000
71A96VAL00.0170.00420.2960.0000.0000.0000.0000.0000.000
72A97ALA00.0080.02317.966-0.008-0.0080.0000.0000.0000.000
73A98THR00.002-0.00618.2120.0390.0390.0000.0000.0000.000
74A99MET0-0.032-0.00412.721-0.043-0.0430.0000.0000.0000.000
75A100LYS10.8930.94416.7640.1570.1570.0000.0000.0000.000
76A101ALA00.0450.01016.8740.0250.0250.0000.0000.0000.000
77A102SER0-0.039-0.02917.5230.0370.0370.0000.0000.0000.000
78A103ASP-1-0.842-0.90816.918-0.127-0.1270.0000.0000.0000.000
79A104VAL00.0430.04312.552-0.065-0.0650.0000.0000.0000.000
80A105ALA0-0.006-0.0048.4580.0690.0690.0000.0000.0000.000
81A106THR00.0520.00710.5910.1160.1160.0000.0000.0000.000
82A107PRO00.0060.0097.159-0.035-0.0350.0000.0000.0000.000
83A108LEU00.0010.0017.9270.0380.0380.0000.0000.0000.000
84A109ARG10.8670.95411.120-0.167-0.1670.0000.0000.0000.000
85A110GLY00.0610.03514.6460.0610.0610.0000.0000.0000.000
86A111LYS10.8380.95911.941-0.559-0.5590.0000.0000.0000.000
87A112THR00.0130.01515.113-0.060-0.0600.0000.0000.0000.000
88A113LEU0-0.0070.00413.2850.0370.0370.0000.0000.0000.000
89A114THR00.0060.00316.278-0.025-0.0250.0000.0000.0000.000
90A115LEU0-0.037-0.01418.696-0.004-0.0040.0000.0000.0000.000
91A116THR00.026-0.00621.3720.0080.0080.0000.0000.0000.000
92A117LEU00.0010.02224.276-0.007-0.0070.0000.0000.0000.000
93A118GLY00.0500.03527.2840.0130.0130.0000.0000.0000.000
94A119ASN0-0.038-0.04228.446-0.003-0.0030.0000.0000.0000.000
95A120ALA0-0.0020.00530.828-0.004-0.0040.0000.0000.0000.000
96A121ASP-1-0.758-0.84333.5610.0130.0130.0000.0000.0000.000
97A122LYS10.8590.93731.713-0.009-0.0090.0000.0000.0000.000
98A123GLY00.0400.01933.905-0.002-0.0020.0000.0000.0000.000
99A124SER00.0090.01631.0180.0020.0020.0000.0000.0000.000
100A125TYR00.0180.01329.8000.0020.0020.0000.0000.0000.000
101A126THR0-0.0190.01625.133-0.006-0.0060.0000.0000.0000.000
102A127TRP00.0570.00722.9690.0060.0060.0000.0000.0000.000
103A128ALA00.0300.03220.710-0.017-0.0170.0000.0000.0000.000
104A142CYS0-0.066-0.02212.0830.0080.0080.0000.0000.0000.000
105A130THR00.0230.01915.9900.0210.0210.0000.0000.0000.000
106A131SER00.017-0.00712.891-0.015-0.0150.0000.0000.0000.000
107A132ASN00.0440.03614.5460.0460.0460.0000.0000.0000.000
108A133ALA00.0140.0169.4450.0800.0800.0000.0000.0000.000
109A134ASP-1-0.799-0.8976.7402.1332.1330.0000.0000.0000.000
110A135ASN00.1080.0327.475-0.214-0.2140.0000.0000.0000.000
111A136LYS10.8890.9731.924-10.397-12.6307.189-1.268-3.6880.005
112A137TYR0-0.027-0.0313.101-2.493-0.4930.308-0.853-1.456-0.007
113A138LEU00.0400.0365.220-0.408-0.382-0.0010.000-0.0240.000
114A139PRO00.0730.0427.819-0.082-0.0820.0000.0000.0000.000
115A140LYS11.0111.0018.3490.2710.2710.0000.0000.0000.000
116A141THR0-0.010-0.01211.2690.0730.0730.0000.0000.0000.000
117A143GLN0-0.064-0.0087.3330.1730.1730.0000.0000.0000.000
118A144THR00.0480.03612.095-0.027-0.0270.0000.0000.0000.000
119A145ALA00.0180.00813.1200.0280.0280.0000.0000.0000.000
120A146THR00.0000.00814.0920.0180.0180.0000.0000.0000.000
121A147THR0-0.0030.01015.836-0.002-0.0020.0000.0000.0000.000
122A148THR00.0410.03218.5470.0140.0140.0000.0000.0000.000
123A149THR00.0230.03420.669-0.013-0.0130.0000.0000.0000.000
124A150PRO-1-0.847-0.88924.3350.2110.2110.0000.0000.0000.000
125A151HOH00.0270.01517.752-0.011-0.0110.0000.0000.0000.000
126A152HOH0-0.011-0.01722.6540.0060.0060.0000.0000.0000.000
127A153HOH00.0370.03126.167-0.006-0.0060.0000.0000.0000.000
128A154HOH0-0.020-0.02730.036-0.003-0.0030.0000.0000.0000.000
129A155HOH0-0.027-0.02123.8180.0070.0070.0000.0000.0000.000
130A156HOH0-0.042-0.03125.7670.0040.0040.0000.0000.0000.000
131A157HOH0-0.031-0.02720.9710.0030.0030.0000.0000.0000.000
132A159HOH0-0.009-0.01211.489-0.039-0.0390.0000.0000.0000.000
133A160HOH00.007-0.0029.1510.0290.0290.0000.0000.0000.000
134A161HOH00.0300.03120.6330.0060.0060.0000.0000.0000.000
135A163HOH00.0100.00521.5700.0050.0050.0000.0000.0000.000
136A164HOH00.0060.00229.236-0.002-0.0020.0000.0000.0000.000
137A165HOH0-0.054-0.02527.6970.0050.0050.0000.0000.0000.000
138A166HOH0-0.036-0.0197.7650.1700.1700.0000.0000.0000.000
139A167HOH0-0.022-0.02119.6900.0090.0090.0000.0000.0000.000
140A168HOH00.010-0.01030.723-0.001-0.0010.0000.0000.0000.000
141A170HOH0-0.054-0.04428.4470.0040.0040.0000.0000.0000.000
142A171HOH0-0.005-0.01928.3370.0050.0050.0000.0000.0000.000
143A172HOH0-0.041-0.02840.4010.0010.0010.0000.0000.0000.000
144A173HOH0-0.033-0.01622.100-0.008-0.0080.0000.0000.0000.000
145A174HOH00.0240.00717.437-0.005-0.0050.0000.0000.0000.000
146A175HOH0-0.019-0.01530.8440.0020.0020.0000.0000.0000.000
147A176HOH0-0.012-0.00427.8530.0050.0050.0000.0000.0000.000
148A177HOH0-0.004-0.00325.9650.0050.0050.0000.0000.0000.000
149A178HOH0-0.059-0.0447.9040.0220.0220.0000.0000.0000.000
150A180HOH00.000-0.01325.9530.0010.0010.0000.0000.0000.000
151A181HOH0-0.027-0.02225.0090.0030.0030.0000.0000.0000.000
152A182HOH0-0.034-0.02819.796-0.007-0.0070.0000.0000.0000.000
153A183HOH00.0300.03137.410-0.002-0.0020.0000.0000.0000.000
154A184HOH00.0080.00617.8310.0140.0140.0000.0000.0000.000
155A185HOH0-0.062-0.04535.226-0.001-0.0010.0000.0000.0000.000
156A186HOH0-0.011-0.01534.8960.0020.0020.0000.0000.0000.000
157A187HOH0-0.028-0.02133.4480.0030.0030.0000.0000.0000.000
158A189HOH0-0.032-0.02121.8980.0050.0050.0000.0000.0000.000
159A190HOH0-0.043-0.04824.1980.0040.0040.0000.0000.0000.000
160A191HOH00.0290.01422.3370.0100.0100.0000.0000.0000.000
161A192HOH0-0.029-0.02129.1570.0020.0020.0000.0000.0000.000
162A193HOH00.0030.00834.8160.0000.0000.0000.0000.0000.000
163A194HOH0-0.039-0.04113.256-0.014-0.0140.0000.0000.0000.000
164A195HOH0-0.060-0.05810.292-0.010-0.0100.0000.0000.0000.000
165A196HOH0-0.060-0.05127.9670.0030.0030.0000.0000.0000.000
166A197HOH00.004-0.0063.051-0.7730.0910.224-0.596-0.491-0.005
167A198HOH0-0.054-0.0406.8290.1590.1590.0000.0000.0000.000
168A199HOH0-0.021-0.01738.0940.0010.0010.0000.0000.0000.000
169A200HOH0-0.050-0.03119.4160.0070.0070.0000.0000.0000.000
170A201HOH0-0.017-0.01828.3370.0040.0040.0000.0000.0000.000
171A202HOH0-0.032-0.02213.2960.0330.0330.0000.0000.0000.000
172A203HOH0-0.078-0.08832.544-0.002-0.0020.0000.0000.0000.000
173A208HOH0-0.034-0.01826.9490.0020.0020.0000.0000.0000.000
174A209HOH0-0.044-0.03335.369-0.002-0.0020.0000.0000.0000.000
175A210HOH0-0.028-0.01338.4810.0000.0000.0000.0000.0000.000
176A211HOH00.0360.03612.480-0.048-0.0480.0000.0000.0000.000
177A212HOH0-0.087-0.07129.9810.0030.0030.0000.0000.0000.000
178A213HOH0-0.018-0.01619.5780.0070.0070.0000.0000.0000.000
179A215HOH0-0.041-0.03037.0090.0010.0010.0000.0000.0000.000
180A218HOH0-0.030-0.02524.008-0.001-0.0010.0000.0000.0000.000
181A219HOH0-0.034-0.02917.292-0.006-0.0060.0000.0000.0000.000
182A221HOH0-0.023-0.02724.9390.0050.0050.0000.0000.0000.000
183A224HOH0-0.021-0.01435.4810.0000.0000.0000.0000.0000.000
184A225HOH0-0.019-0.02115.9470.0230.0230.0000.0000.0000.000
185A227HOH0-0.023-0.01735.2450.0010.0010.0000.0000.0000.000
186A231HOH0-0.024-0.01714.5600.0230.0230.0000.0000.0000.000
187A234HOH0-0.040-0.03412.3160.0220.0220.0000.0000.0000.000
188A237HOH00.0150.01819.767-0.013-0.0130.0000.0000.0000.000
189A238HOH0-0.022-0.02418.745-0.014-0.0140.0000.0000.0000.000
190A239HOH0-0.027-0.01923.305-0.004-0.0040.0000.0000.0000.000
191A240HOH0-0.009-0.0115.438-0.105-0.1050.0000.0000.0000.000
192A241HOH0-0.063-0.03838.8740.0000.0000.0000.0000.0000.000
193A243HOH0-0.051-0.04434.2520.0020.0020.0000.0000.0000.000
194A245HOH0-0.056-0.03425.0710.0010.0010.0000.0000.0000.000
195A249HOH00.0290.01812.001-0.035-0.0350.0000.0000.0000.000
196A252HOH0-0.022-0.01535.4910.0010.0010.0000.0000.0000.000
197A253HOH0-0.034-0.02915.4380.0010.0010.0000.0000.0000.000
198A256HOH0-0.046-0.03630.2960.0020.0020.0000.0000.0000.000
199A261HOH0-0.016-0.01318.725-0.003-0.0030.0000.0000.0000.000
200A263HOH0-0.034-0.02334.948-0.002-0.0020.0000.0000.0000.000
201A266HOH00.0380.02415.3610.0130.0130.0000.0000.0000.000
202A267HOH00.0460.03922.728-0.005-0.0050.0000.0000.0000.000
203A268HOH0-0.043-0.03536.7840.0020.0020.0000.0000.0000.000
204A269HOH0-0.015-0.01235.0170.0020.0020.0000.0000.0000.000
205A270HOH0-0.048-0.03014.164-0.012-0.0120.0000.0000.0000.000
206A271HOH0-0.011-0.01011.474-0.032-0.0320.0000.0000.0000.000
207A272HOH00.0350.0248.041-0.098-0.0980.0000.0000.0000.000
208A273HOH0-0.028-0.01828.1320.0010.0010.0000.0000.0000.000
209A275HOH0-0.034-0.02312.1540.0220.0220.0000.0000.0000.000
210A278HOH00.000-0.00519.7160.0000.0000.0000.0000.0000.000
211A279HOH0-0.048-0.04522.165-0.009-0.0090.0000.0000.0000.000
212A282HOH00.0460.02823.867-0.003-0.0030.0000.0000.0000.000
213A283HOH0-0.034-0.02937.1230.0000.0000.0000.0000.0000.000
214A284HOH0-0.060-0.03935.012-0.001-0.0010.0000.0000.0000.000
215A285HOH0-0.032-0.0166.6370.1120.1120.0000.0000.0000.000
216A286HOH0-0.037-0.02032.3670.0000.0000.0000.0000.0000.000
217A287HOH0-0.0160.00217.925-0.012-0.0120.0000.0000.0000.000
218A288HOH0-0.041-0.02643.3840.0000.0000.0000.0000.0000.000
219A290HOH0-0.018-0.02632.328-0.003-0.0030.0000.0000.0000.000
220A291HOH0-0.056-0.02917.262-0.015-0.0150.0000.0000.0000.000
221A292HOH0-0.024-0.02634.007-0.002-0.0020.0000.0000.0000.000
222A295HOH00.0430.0335.9790.3590.3590.0000.0000.0000.000
223A297HOH0-0.021-0.01228.898-0.003-0.0030.0000.0000.0000.000
224A298HOH0-0.018-0.01328.863-0.003-0.0030.0000.0000.0000.000
225A301HOH0-0.042-0.0432.454-2.549-0.3990.915-1.506-1.559-0.012
226A302HOH0-0.027-0.01938.7590.0010.0010.0000.0000.0000.000
227B214HOH0-0.048-0.03738.0540.0010.0010.0000.0000.0000.000
228B229HOH0-0.037-0.02141.8070.0010.0010.0000.0000.0000.000
229B282HOH0-0.052-0.03343.4030.0010.0010.0000.0000.0000.000