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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: P8RYP

Calculation Name: 3OMO-A-Xray11

Preferred Name: Estrogen receptor beta

Target Type: SINGLE PROTEIN

Ligand Name: 2-(trifluoroacetyl)-1,2,3,4-tetrahydroisoquinolin-6-ol

ligand 3-letter code: WV7

PDB ID: 3OMO

Chain ID: A

ChEMBL ID: CHEMBL242

UniProt ID: Q92731

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.2017021
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 235
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3061488.098455
FMO2-HF: Nuclear repulsion 2965012.638667
FMO2-HF: Total energy -96475.459789
FMO2-MP2: Total energy -96745.729361


3D Structure
Snapshot
 
Ligand structure

WV7

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-64.256-37.52240.193-20.935-45.9990.014


Interactive mode: IFIE and PIEDA for fragment #235(C:1:WV7)


Summations of interaction energy for fragment #235(C:1:WV7)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-64.256-37.52240.193-20.935-45.999-0.014
Interaction energy analysis for fragmet #235(C:1:WV7)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.014 / q_NPA : -0.034
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1C264SER10.7700.86526.0640.2070.2070.0000.0000.0000.000
2C265PRO00.0600.02025.284-0.017-0.0170.0000.0000.0000.000
3C266GLU-1-0.752-0.87324.061-0.311-0.3110.0000.0000.0000.000
4C267GLN00.0610.04724.379-0.024-0.0240.0000.0000.0000.000
5C268LEU00.0290.03820.964-0.021-0.0210.0000.0000.0000.000
6C269VAL00.006-0.00219.718-0.033-0.0330.0000.0000.0000.000
7C270LEU0-0.014-0.00219.416-0.042-0.0420.0000.0000.0000.000
8C271THR00.014-0.01120.043-0.033-0.0330.0000.0000.0000.000
9C272LEU0-0.011-0.01715.871-0.038-0.0380.0000.0000.0000.000
10C273LEU0-0.048-0.02415.385-0.078-0.0780.0000.0000.0000.000
11C274GLU-1-0.926-0.96315.946-0.521-0.5210.0000.0000.0000.000
12C275ALA00.0080.00615.224-0.044-0.0440.0000.0000.0000.000
13C276GLU-1-0.770-0.83610.224-1.278-1.2780.0000.0000.0000.000
14C277PRO0-0.0060.0167.6580.0910.0910.0000.0000.0000.000
15C278PRO0-0.024-0.0199.9090.0150.0150.0000.0000.0000.000
16C279HIS0-0.018-0.0096.173-0.783-0.7830.0000.0000.0000.000
17C280VAL0-0.024-0.0125.3940.8490.8490.0000.0000.0000.000
18C281LEU0-0.020-0.0116.918-0.118-0.1180.0000.0000.0000.000
19C282ILE0-0.017-0.0106.3340.0800.0800.0000.0000.0000.000
20C283SER00.001-0.0099.169-0.014-0.0140.0000.0000.0000.000
21C284ARG10.7890.84410.7990.3000.3000.0000.0000.0000.000
22C285PRO0-0.039-0.00610.8640.0150.0150.0000.0000.0000.000
23C286SER0-0.0060.00713.8130.0810.0810.0000.0000.0000.000
24C287ALA0-0.014-0.00816.7020.0450.0450.0000.0000.0000.000
25C288PRO00.0240.00115.7890.0110.0110.0000.0000.0000.000
26C289PHE00.0170.0219.3550.0610.0610.0000.0000.0000.000
27C290THR00.013-0.00512.9220.0110.0110.0000.0000.0000.000
28C291GLU-1-0.753-0.8729.7121.7761.7760.0000.0000.0000.000
29C292ALA00.0560.0329.4920.3710.3710.0000.0000.0000.000
30C293SER0-0.018-0.01910.4480.1240.1240.0000.0000.0000.000
31C294MET0-0.0150.0137.036-0.192-0.1920.0000.0000.0000.000
32C295MET00.0550.0312.772-2.012-0.9280.508-0.500-1.0930.006
33C296MET0-0.0120.0316.1840.2280.2280.0000.0000.0000.000
34C297SER0-0.037-0.0397.165-0.515-0.5150.0000.0000.0000.000
35C298LEU0-0.019-0.0082.266-3.352-1.5661.740-0.772-2.7540.001
36C299THR0-0.010-0.0382.549-7.676-4.7931.058-1.567-2.374-0.022
37C300LYS10.7740.8704.825-0.322-0.247-0.001-0.006-0.0690.000
38C301LEU00.0020.0072.148-1.373-0.2561.639-0.559-2.1980.003
39C302ALA00.0230.0082.560-3.039-0.8461.661-1.138-2.7170.004
40C303ASP-1-0.731-0.8653.758-0.694-0.6920.0710.201-0.2740.002
41C304LYS10.7890.8976.5851.5031.5030.0000.0000.0000.000
42C305GLU-1-0.720-0.8331.648-31.501-37.41915.248-5.654-3.676-0.059
43C306LEU00.0060.0105.6010.7540.7540.0000.0000.0000.000
44C307VAL0-0.014-0.0128.0590.3040.3040.0000.0000.0000.000
45C308HIS0-0.011-0.0148.0420.4760.4760.0000.0000.0000.000
46C309MET0-0.0060.0247.0060.2450.2450.0000.0000.0000.000
47C310ILE00.0180.0069.8590.2160.2160.0000.0000.0000.000
48C311SER0-0.059-0.03412.7330.1450.1450.0000.0000.0000.000
49C312TRP0-0.0020.01011.2560.0100.0100.0000.0000.0000.000
50C313ALA00.0460.00913.1610.0980.0980.0000.0000.0000.000
51C314LYS10.8740.92815.1060.3740.3740.0000.0000.0000.000
52C315LYS10.8160.92414.4080.8750.8750.0000.0000.0000.000
53C316ILE0-0.030-0.00215.3350.0370.0370.0000.0000.0000.000
54C317PRO00.0300.00319.6020.0330.0330.0000.0000.0000.000
55C318GLY00.0330.01822.9210.0020.0020.0000.0000.0000.000
56C319PHE00.0440.00217.1740.0190.0190.0000.0000.0000.000
57C320VAL0-0.021-0.01520.9690.0220.0220.0000.0000.0000.000
58C321GLU-1-0.901-0.94222.720-0.137-0.1370.0000.0000.0000.000
59C322LEU0-0.0290.01221.2310.0250.0250.0000.0000.0000.000
60C323SER0-0.018-0.03025.191-0.008-0.0080.0000.0000.0000.000
61C324LEU00.004-0.00423.194-0.014-0.0140.0000.0000.0000.000
62C325PHE00.0450.01122.696-0.012-0.0120.0000.0000.0000.000
63C326ASP-1-0.708-0.82021.341-0.010-0.0100.0000.0000.0000.000
64C327GLN0-0.098-0.04019.788-0.044-0.0440.0000.0000.0000.000
65C328VAL0-0.0070.00717.299-0.063-0.0630.0000.0000.0000.000
66C329ARG10.9060.93716.524-0.062-0.0620.0000.0000.0000.000
67C330LEU0-0.009-0.00816.6610.0390.0390.0000.0000.0000.000
68C331LEU00.0060.00312.296-0.005-0.0050.0000.0000.0000.000
69C332GLU-1-0.900-0.96612.0540.1490.1490.0000.0000.0000.000
70C333SER0-0.042-0.02212.6060.1200.1200.0000.0000.0000.000
71C334CYS0-0.035-0.01510.8450.0210.0210.0000.0000.0000.000
72C335TRP00.0680.0145.834-0.144-0.1440.0000.0000.0000.000
73C336MET00.0240.0262.963-3.166-1.5271.829-0.910-2.558-0.003
74C337GLU-1-0.786-0.8844.573-0.695-0.563-0.001-0.009-0.1220.000
75C338VAL0-0.020-0.0186.480-0.166-0.1660.0000.0000.0000.000
76C339LEU0-0.020-0.0012.538-3.483-0.7792.181-1.225-3.6600.009
77C340MET0-0.037-0.0032.276-2.849-0.0204.498-1.747-5.581-0.006
78C341MET0-0.002-0.0023.4880.5030.5610.0070.128-0.1930.000
79C342GLY0-0.0050.0034.823-0.198-0.130-0.001-0.007-0.0600.000
80C343LEU00.0110.0122.413-4.566-1.9423.836-1.421-5.0390.008
81C344MET0-0.0160.0024.375-0.640-0.4200.002-0.056-0.1660.000
82C345TRP0-0.039-0.0167.2710.0850.0850.0000.0000.0000.000
83C346ARG10.7380.8132.3227.9199.1900.320-0.641-0.9490.001
84C347SER00.013-0.0097.667-0.006-0.0060.0000.0000.0000.000
85C348ILE00.0050.01510.2900.0910.0910.0000.0000.0000.000
86C349ASP-1-0.876-0.94213.002-0.422-0.4220.0000.0000.0000.000
87C350HIS0-0.042-0.01812.8760.0860.0860.0000.0000.0000.000
88C351PRO0-0.019-0.00813.8800.0220.0220.0000.0000.0000.000
89C352GLY00.0050.00213.437-0.013-0.0130.0000.0000.0000.000
90C353LYS10.8260.88910.9500.2430.2430.0000.0000.0000.000
91C354LEU0-0.0150.0044.707-0.140-0.029-0.001-0.003-0.1070.000
92C355ILE0-0.0030.0028.009-0.020-0.0200.0000.0000.0000.000
93C356PHE00.0290.0022.071-3.485-0.8612.023-1.027-3.6200.005
94C357ALA00.0250.0194.695-2.214-2.060-0.001-0.012-0.1420.000
95C358PRO0-0.024-0.0257.4110.4300.4300.0000.0000.0000.000
96C359ASP-1-0.853-0.89210.744-0.554-0.5540.0000.0000.0000.000
97C360LEU0-0.0050.0015.7100.2040.2040.0000.0000.0000.000
98C361VAL0-0.0050.0008.496-0.112-0.1120.0000.0000.0000.000
99C362LEU0-0.014-0.0036.6260.1380.1380.0000.0000.0000.000
100C363ASP-1-0.796-0.8879.916-0.129-0.1290.0000.0000.0000.000
101C364ARG10.8320.8829.153-0.264-0.2640.0000.0000.0000.000
102C365ASP-1-0.791-0.88510.0260.5610.5610.0000.0000.0000.000
103C366GLU-1-0.731-0.82910.8700.0350.0350.0000.0000.0000.000
104C367GLY00.0350.0108.3310.1250.1250.0000.0000.0000.000
105C368LYS10.8060.8828.947-0.222-0.2220.0000.0000.0000.000
106C369CYS0-0.094-0.02711.372-0.084-0.0840.0000.0000.0000.000
107C370VAL0-0.016-0.0116.4270.0870.0870.0000.0000.0000.000
108C371GLU-1-0.763-0.8518.5411.8331.8330.0000.0000.0000.000
109C372GLY00.0380.0177.8810.4790.4790.0000.0000.0000.000
110C373ILE0-0.007-0.0112.548-1.896-0.3520.966-0.920-1.5900.009
111C374LEU0-0.021-0.0065.478-0.239-0.207-0.0010.000-0.0320.000
112C375GLU-1-0.812-0.8958.0131.0961.0960.0000.0000.0000.000
113C376ILE00.0050.0023.002-2.334-0.4180.240-0.860-1.2960.006
114C377PHE00.006-0.0102.984-1.933-0.6530.113-0.398-0.9950.003
115C378ASP-1-0.792-0.8836.6660.1320.1320.0000.0000.0000.000
116C379MET0-0.052-0.0138.546-0.184-0.1840.0000.0000.0000.000
117C380LEU00.0390.0263.126-0.847-0.1850.055-0.131-0.587-0.001
118C381LEU00.0280.0327.613-0.031-0.0310.0000.0000.0000.000
119C382ALA0-0.0180.01010.600-0.020-0.0200.0000.0000.0000.000
120C383THR0-0.021-0.0329.4160.0110.0110.0000.0000.0000.000
121C384THR0-0.017-0.0299.011-0.039-0.0390.0000.0000.0000.000
122C385SER0-0.072-0.04611.3870.0050.0050.0000.0000.0000.000
123C386ARG10.8410.89814.3510.0770.0770.0000.0000.0000.000
124C387PHE00.0520.0079.7520.0150.0150.0000.0000.0000.000
125C388ARG10.8630.93813.8270.2610.2610.0000.0000.0000.000
126C389GLU-1-0.847-0.90317.283-0.065-0.0650.0000.0000.0000.000
127C390LEU0-0.012-0.00217.6580.0090.0090.0000.0000.0000.000
128C391LYS10.8250.91518.7840.1840.1840.0000.0000.0000.000
129C392LEU0-0.0090.02213.2880.0060.0060.0000.0000.0000.000
130C393GLN0-0.006-0.01717.218-0.041-0.0410.0000.0000.0000.000
131C394HIS00.0850.04112.6420.0290.0290.0000.0000.0000.000
132C395LYS10.8730.91615.8400.3190.3190.0000.0000.0000.000
133C396GLU-1-0.740-0.82817.573-0.246-0.2460.0000.0000.0000.000
134C397TYR0-0.009-0.0278.8290.0010.0010.0000.0000.0000.000
135C398LEU0-0.0160.00713.164-0.007-0.0070.0000.0000.0000.000
136C399CYS0-0.052-0.02214.6780.0120.0120.0000.0000.0000.000
137C400VAL00.0360.00412.7690.0230.0230.0000.0000.0000.000
138C401LYS10.8310.9048.1111.1561.1560.0000.0000.0000.000
139C402ALA00.0150.00912.1470.0100.0100.0000.0000.0000.000
140C403MET0-0.039-0.02615.3130.0370.0370.0000.0000.0000.000
141C404ILE0-0.014-0.0079.9440.0350.0350.0000.0000.0000.000
142C405LEU0-0.032-0.00913.4710.0440.0440.0000.0000.0000.000
143C406LEU0-0.019-0.02214.4810.0340.0340.0000.0000.0000.000
144C407ASN0-0.044-0.02917.0400.0120.0120.0000.0000.0000.000
145C408SER00.0170.03016.3760.0470.0470.0000.0000.0000.000
146C409SER0-0.026-0.01018.017-0.020-0.0200.0000.0000.0000.000
147C410MET00.0220.01919.9220.0150.0150.0000.0000.0000.000
148C411TYR00.0080.02022.2980.0200.0200.0000.0000.0000.000
149C412PRO0-0.0010.02225.031-0.001-0.0010.0000.0000.0000.000
150C413LEU00.0340.00823.8700.0140.0140.0000.0000.0000.000
151C414VAL0-0.025-0.00527.490-0.011-0.0110.0000.0000.0000.000
152C415THR00.001-0.01629.1500.0100.0100.0000.0000.0000.000
153C416ALA00.014-0.00131.838-0.008-0.0080.0000.0000.0000.000
154C417THR0-0.007-0.00331.962-0.007-0.0070.0000.0000.0000.000
155C418GLN0-0.0460.00128.337-0.026-0.0260.0000.0000.0000.000
156C419ASP-1-0.779-0.89630.712-0.047-0.0470.0000.0000.0000.000
157C420ALA00.0410.01230.0770.0020.0020.0000.0000.0000.000
158C421ASP-1-0.801-0.87530.677-0.090-0.0900.0000.0000.0000.000
159C422SER0-0.021-0.03425.737-0.017-0.0170.0000.0000.0000.000
160C423SER0-0.020-0.02726.066-0.006-0.0060.0000.0000.0000.000
161C424ARG10.8580.90227.1040.0980.0980.0000.0000.0000.000
162C425LYS10.7350.86425.9930.1180.1180.0000.0000.0000.000
163C426LEU00.0450.03620.385-0.017-0.0170.0000.0000.0000.000
164C427ALA00.0250.01623.460-0.012-0.0120.0000.0000.0000.000
165C428HIS0-0.0190.00825.781-0.006-0.0060.0000.0000.0000.000
166C429LEU00.0080.00720.718-0.009-0.0090.0000.0000.0000.000
167C430LEU00.0330.02319.629-0.021-0.0210.0000.0000.0000.000
168C431ASN0-0.041-0.02322.264-0.003-0.0030.0000.0000.0000.000
169C432ALA0-0.0110.00324.613-0.008-0.0080.0000.0000.0000.000
170C433VAL00.0230.00118.389-0.017-0.0170.0000.0000.0000.000
171C434THR00.006-0.00721.804-0.006-0.0060.0000.0000.0000.000
172C435ASP-1-0.864-0.93923.334-0.160-0.1600.0000.0000.0000.000
173C436ALA0-0.056-0.02421.9840.0010.0010.0000.0000.0000.000
174C437LEU00.0390.02018.660-0.005-0.0050.0000.0000.0000.000
175C438VAL00.0310.01121.7690.0050.0050.0000.0000.0000.000
176C439TRP00.0390.01025.222-0.002-0.0020.0000.0000.0000.000
177C440VAL0-0.034-0.02621.1480.0010.0010.0000.0000.0000.000
178C441ILE0-0.0060.00921.1600.0030.0030.0000.0000.0000.000
179C442ALA0-0.0260.00524.6660.0080.0080.0000.0000.0000.000
180C443LYS10.8230.92526.3100.2400.2400.0000.0000.0000.000
181C444SER0-0.046-0.03324.286-0.003-0.0030.0000.0000.0000.000
182C445GLY00.0000.00626.0570.0040.0040.0000.0000.0000.000
183C446ILE0-0.030-0.01125.9480.0140.0140.0000.0000.0000.000
184C447SER00.0480.02029.854-0.003-0.0030.0000.0000.0000.000
185C448SER00.0590.02431.1720.0010.0010.0000.0000.0000.000
186C449GLN00.0220.02331.0670.0030.0030.0000.0000.0000.000
187C450GLN00.0350.00428.7330.0080.0080.0000.0000.0000.000
188C451GLN0-0.016-0.00826.871-0.001-0.0010.0000.0000.0000.000
189C452SER00.016-0.00626.166-0.005-0.0050.0000.0000.0000.000
190C453MET0-0.0060.00425.6790.0030.0030.0000.0000.0000.000
191C454ARG10.7540.84120.4140.2190.2190.0000.0000.0000.000
192C455LEU00.0330.01321.679-0.011-0.0110.0000.0000.0000.000
193C456ALA00.0190.01021.8460.0000.0000.0000.0000.0000.000
194C457ASN0-0.051-0.03820.1740.0140.0140.0000.0000.0000.000
195C458LEU00.0170.00116.290-0.001-0.0010.0000.0000.0000.000
196C459LEU0-0.0050.00017.044-0.010-0.0100.0000.0000.0000.000
197C460MET0-0.019-0.01118.3560.0220.0220.0000.0000.0000.000
198C461LEU00.0040.00613.2070.0270.0270.0000.0000.0000.000
199C462LEU0-0.0010.01313.380-0.021-0.0210.0000.0000.0000.000
200C463SER0-0.023-0.01713.2170.0250.0250.0000.0000.0000.000
201C464HIS0-0.0080.00011.7230.0570.0570.0000.0000.0000.000
202C465VAL0-0.0020.0067.6570.0130.0130.0000.0000.0000.000
203C466ARG10.8370.9058.658-0.157-0.1570.0000.0000.0000.000
204C467HIS0-0.021-0.0119.8810.1420.1420.0000.0000.0000.000
205C468ALA00.0340.0096.0320.2240.2240.0000.0000.0000.000
206C469SER00.027-0.0025.1720.5200.561-0.001-0.003-0.0370.000
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