FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: P912P

Calculation Name: 2RG5-A-Xray12

Preferred Name: MAP kinase p38 alpha

Target Type: SINGLE PROTEIN

Ligand Name: n-ethyl-4-{[5-(methoxycarbamoyl)-2-methylphenyl]amino}-5-methylpyrrolo[2,1-f][1,2,4]triazine-6-carboxamide

ligand 3-letter code: 279

PDB ID: 2RG5

Chain ID: A

ChEMBL ID: CHEMBL260

UniProt ID: Q16539

Base Structure: X-ray

Registration Date: 2017-08-22

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 347
LigandResidueName 279
LigandFragmentNumber 347
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5794704.057405
FMO2-HF: Nuclear repulsion 5654467.274231
FMO2-HF: Total energy -140236.783174
FMO2-MP2: Total energy -140646.704025


3D Structure
Snapshot
 
Ligand structure

279

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-88.959-88.528122.282-35.537-87.1700.036


Interactive mode: IFIE and PIEDA for fragment #347(A:501:279)


Summations of interaction energy for fragment #347(A:501:279)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-88.959-88.528122.282-35.537-87.17-0.036
Interaction energy analysis for fragmet #347(A:501:279)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.037 / q_NPA : 0.008
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A6PRO10.8370.89716.0560.3210.3210.0000.0000.0000.000
2A7THR00.0670.03718.940-0.032-0.0320.0000.0000.0000.000
3A8PHE00.0320.02013.0230.0240.0240.0000.0000.0000.000
4A9TYR0-0.055-0.02714.2480.0470.0470.0000.0000.0000.000
5A10ARG10.9800.97316.3220.0190.0190.0000.0000.0000.000
6A11GLN00.0520.01114.4590.0580.0580.0000.0000.0000.000
7A12GLU-1-0.960-0.97715.8540.0670.0670.0000.0000.0000.000
8A13LEU0-0.0250.00115.3990.0020.0020.0000.0000.0000.000
9A14ASN0-0.0060.00410.932-0.052-0.0520.0000.0000.0000.000
10A15LYS10.9810.98015.052-0.323-0.3230.0000.0000.0000.000
11A16THR0-0.091-0.04612.455-0.075-0.0750.0000.0000.0000.000
12A17ILE00.0900.05015.1560.0410.0410.0000.0000.0000.000
13A18TRP0-0.0140.0066.642-0.085-0.0850.0000.0000.0000.000
14A19GLU-1-0.908-0.95512.846-0.170-0.1700.0000.0000.0000.000
15A20VAL00.001-0.0129.539-0.123-0.1230.0000.0000.0000.000
16A21PRO0-0.047-0.01311.3860.0850.0850.0000.0000.0000.000
17A22GLU-1-0.842-0.92113.9620.0120.0120.0000.0000.0000.000
18A23ARG10.8420.92412.5210.2310.2310.0000.0000.0000.000
19A24TYR0-0.034-0.0169.6240.1310.1310.0000.0000.0000.000
20A25GLN00.0270.01412.318-0.008-0.0080.0000.0000.0000.000
21A26ASN00.009-0.01813.3240.0780.0780.0000.0000.0000.000
22A27LEU0-0.0290.0019.9210.1430.1430.0000.0000.0000.000
23A28SER00.0350.01710.150-0.212-0.2120.0000.0000.0000.000
24A29PRO0-0.009-0.0079.2970.3590.3590.0000.0000.0000.000
25A30VAL0-0.004-0.0023.914-0.728-0.2640.003-0.072-0.3940.000
26A31GLY0-0.022-0.0127.1500.0310.0310.0000.0000.0000.000
27A32SER0-0.050-0.0447.276-0.144-0.1440.0000.0000.0000.000
28A33GLY00.0420.0453.6070.1870.3010.003-0.052-0.0650.000
29A34ALA00.005-0.0064.473-0.669-0.548-0.001-0.012-0.1080.000
30A35TYR0-0.013-0.0433.728-2.484-1.4360.032-0.225-0.8550.000
31A36GLY0-0.005-0.0016.262-0.599-0.5990.0000.0000.0000.000
32A37SER0-0.035-0.0025.3470.5850.5850.0000.0000.0000.000
33A38VAL00.024-0.0012.258-2.834-0.9212.632-1.048-3.4980.006
34A39CYS0-0.090-0.0315.229-0.226-0.2260.0000.0000.0000.000
35A40ALA00.0570.0475.9870.2240.2240.0000.0000.0000.000
36A41ALA0-0.031-0.0237.714-0.663-0.6630.0000.0000.0000.000
37A42PHE0-0.041-0.0219.3690.3280.3280.0000.0000.0000.000
38A43ASP-1-0.748-0.85510.937-0.043-0.0430.0000.0000.0000.000
39A44THR0-0.020-0.02612.6750.0150.0150.0000.0000.0000.000
40A45LYS10.9100.96415.2420.1170.1170.0000.0000.0000.000
41A46THR0-0.011-0.01113.378-0.070-0.0700.0000.0000.0000.000
42A47GLY0-0.0010.00015.2220.0450.0450.0000.0000.0000.000
43A48LEU00.0170.01010.2560.0760.0760.0000.0000.0000.000
44A49ARG10.9140.9687.262-1.738-1.7380.0000.0000.0000.000
45A50VAL00.020-0.0045.5820.3950.3950.0000.0000.0000.000
46A51ALA0-0.0030.0052.167-0.609-0.0713.851-1.270-3.1190.002
47A52VAL0-0.008-0.0103.261-3.758-2.3490.261-0.555-1.114-0.005
48A53LYS10.8810.9602.110-2.469-0.8067.909-2.664-6.9090.025
49A54LYS10.8810.9493.967-1.147-0.9170.007-0.014-0.2240.000
50A55LEU00.0180.0055.1950.6170.6170.0000.0000.0000.000
51A56SER00.000-0.0188.1980.2020.2020.0000.0000.0000.000
52A57ARG10.8220.89711.7490.0500.0500.0000.0000.0000.000
53A58PRO00.0540.05110.7590.0590.0590.0000.0000.0000.000
54A59PHE00.0670.01512.512-0.009-0.0090.0000.0000.0000.000
55A60GLN00.0230.03115.8080.1450.1450.0000.0000.0000.000
56A61SER00.015-0.00116.3660.0480.0480.0000.0000.0000.000
57A62ILE00.0980.03516.537-0.075-0.0750.0000.0000.0000.000
58A63ILE00.0290.02313.778-0.075-0.0750.0000.0000.0000.000
59A64HIS0-0.087-0.03812.072-0.009-0.0090.0000.0000.0000.000
60A65ALA00.0200.03311.533-0.246-0.2460.0000.0000.0000.000
61A66LYS10.9010.96412.6200.4310.4310.0000.0000.0000.000
62A67ARG10.8490.9117.7420.0820.0820.0000.0000.0000.000
63A68THR0-0.036-0.0417.674-0.605-0.6050.0000.0000.0000.000
64A69TYR0-0.0020.0218.124-0.541-0.5410.0000.0000.0000.000
65A70ARG10.7470.8396.1420.8700.8700.0000.0000.0000.000
66A71GLU-1-0.793-0.9151.934-26.945-24.4889.226-5.415-6.268-0.060
67A72LEU0-0.0060.0083.809-1.761-1.3600.005-0.141-0.264-0.001
68A73ARG10.9200.9556.6241.6861.6860.0000.0000.0000.000
69A74LEU0-0.021-0.0073.5840.0180.3760.016-0.069-0.3050.000
70A75LEU0-0.025-0.0122.120-1.383-1.3186.219-1.396-4.8870.004
71A76LYS10.8440.9495.0562.0722.083-0.001-0.003-0.0080.000
72A77HIS0-0.062-0.0448.0610.2780.2780.0000.0000.0000.000
73A78MET0-0.103-0.0415.6960.4240.4240.0000.0000.0000.000
74A79LYS10.9330.9778.2500.7560.7560.0000.0000.0000.000
75A80HIS00.0760.04910.1360.1200.1200.0000.0000.0000.000
76A81GLU-1-0.827-0.90410.6560.4490.4490.0000.0000.0000.000
77A82ASN0-0.027-0.01410.6770.0480.0480.0000.0000.0000.000
78A83VAL0-0.032-0.0105.5580.3520.3520.0000.0000.0000.000
79A84ILE0-0.069-0.0092.087-3.305-1.5634.536-1.504-4.7730.011
80A85GLY00.0630.0355.632-0.247-0.2470.0000.0000.0000.000
81A86LEU0-0.066-0.0334.610-0.714-0.4890.000-0.015-0.2100.000
82A87LEU0-0.010-0.0126.5050.3770.3770.0000.0000.0000.000
83A88ASP-1-0.837-0.9376.942-0.730-0.7300.0000.0000.0000.000
84A89VAL0-0.0030.0116.485-0.806-0.8060.0000.0000.0000.000
85A90PHE0-0.026-0.0068.1130.4050.4050.0000.0000.0000.000
86A91THR0-0.016-0.04110.025-0.097-0.0970.0000.0000.0000.000
87A92PRO0-0.005-0.00912.8020.0350.0350.0000.0000.0000.000
88A93ALA00.0020.03415.9380.0450.0450.0000.0000.0000.000
89A94ARG10.9410.95717.7710.2610.2610.0000.0000.0000.000
90A95SER0-0.032-0.01420.2560.0200.0200.0000.0000.0000.000
91A96LEU00.0420.03819.091-0.038-0.0380.0000.0000.0000.000
92A97GLU-1-0.913-0.97520.508-0.404-0.4040.0000.0000.0000.000
93A98GLU-1-0.921-0.96419.999-0.328-0.3280.0000.0000.0000.000
94A99PHE0-0.075-0.02312.254-0.011-0.0110.0000.0000.0000.000
95A100ASN00.011-0.02115.9530.0160.0160.0000.0000.0000.000
96A101ASP-1-0.923-0.94612.451-0.454-0.4540.0000.0000.0000.000
97A102VAL00.010-0.0027.361-0.031-0.0310.0000.0000.0000.000
98A103TYR00.0280.0286.5360.2180.2180.0000.0000.0000.000
99A104LEU00.0200.0162.277-1.771-0.5261.396-0.537-2.105-0.001
100A105VAL0-0.012-0.0172.832-3.071-1.0140.366-1.051-1.372-0.012
101A106THR00.0280.0101.7931.762-4.31415.762-3.149-6.537-0.007
102A107HIS00.0740.0413.9680.6671.1840.001-0.034-0.4840.000
103A108LEU0-0.064-0.0302.523-6.158-2.6213.864-2.508-4.8930.002
104A109MET0-0.007-0.0061.713-7.143-18.93924.627-6.633-6.1970.036
105A110GLY00.0600.0162.240-4.838-3.7393.786-1.385-3.500-0.027
106A111ALA0-0.047-0.0372.1361.335-3.6808.0670.321-3.372-0.005
107A112ASP-1-0.815-0.8882.3513.604-4.2269.4751.958-3.602-0.019
108A113LEU00.0520.0003.3350.3970.3410.0350.260-0.2380.000
109A114ASN0-0.042-0.0246.6190.2450.2450.0000.0000.0000.000
110A115ASN0-0.068-0.0436.3800.3900.3900.0000.0000.0000.000
111A116ILE00.0110.0306.5020.1440.1440.0000.0000.0000.000
112A117VAL00.0130.0179.3930.0620.0620.0000.0000.0000.000
113A118LYS10.8930.96111.0630.2530.2530.0000.0000.0000.000
114A119CYS0-0.083-0.04512.7940.0200.0200.0000.0000.0000.000
115A120GLN0-0.028-0.01712.508-0.007-0.0070.0000.0000.0000.000
116A121LYS10.9180.96915.868-0.099-0.0990.0000.0000.0000.000
117A122LEU00.0090.02312.727-0.011-0.0110.0000.0000.0000.000
118A123THR0-0.007-0.01117.0360.0040.0040.0000.0000.0000.000
119A124ASP-1-0.756-0.88118.5520.1660.1660.0000.0000.0000.000
120A125ASP-1-0.863-0.92018.8430.2030.2030.0000.0000.0000.000
121A126HIS00.0480.02711.1780.0500.0500.0000.0000.0000.000
122A127VAL0-0.013-0.03115.3360.0300.0300.0000.0000.0000.000
123A128GLN0-0.057-0.03316.4980.0370.0370.0000.0000.0000.000
124A129PHE00.0970.05312.9070.0230.0230.0000.0000.0000.000
125A130LEU0-0.030-0.0049.9570.0530.0530.0000.0000.0000.000
126A131ILE0-0.011-0.03013.3380.0830.0830.0000.0000.0000.000
127A132TYR00.0050.01415.6960.0430.0430.0000.0000.0000.000
128A133GLN00.024-0.00611.6800.0820.0820.0000.0000.0000.000
129A134ILE0-0.054-0.01511.7070.0750.0750.0000.0000.0000.000
130A135LEU0-0.006-0.00713.0780.0280.0280.0000.0000.0000.000
131A136ARG10.8490.93315.355-0.363-0.3630.0000.0000.0000.000
132A137GLY00.0210.00411.074-0.060-0.0600.0000.0000.0000.000
133A138LEU0-0.037-0.03410.385-0.060-0.0600.0000.0000.0000.000
134A139LYS10.8820.96011.996-0.211-0.2110.0000.0000.0000.000
135A140TYR00.0720.0519.156-0.065-0.0650.0000.0000.0000.000
136A141ILE00.0060.0406.842-0.130-0.1300.0000.0000.0000.000
137A142HIS0-0.099-0.0599.929-0.162-0.1620.0000.0000.0000.000
138A143SER0-0.059-0.05512.549-0.063-0.0630.0000.0000.0000.000
139A144ALA00.0030.01010.587-0.030-0.0300.0000.0000.0000.000
140A145ASP-1-0.977-0.99812.369-0.374-0.3740.0000.0000.0000.000
141A146ILE0-0.069-0.0266.027-0.135-0.1350.0000.0000.0000.000
142A147ILE0-0.0490.0298.8500.1540.1540.0000.0000.0000.000
143A148HIS0-0.062-0.0536.444-1.152-1.1520.0000.0000.0000.000
144A149ARG10.8740.9237.5710.0410.0410.0000.0000.0000.000
145A150ASP-1-0.890-0.9579.0641.0861.0860.0000.0000.0000.000
146A151LEU00.0340.0439.5590.3310.3310.0000.0000.0000.000
147A152LYS10.8540.9199.494-1.718-1.7180.0000.0000.0000.000
148A153PRO00.0300.0109.3760.2270.2270.0000.0000.0000.000
149A154SER00.011-0.0076.499-0.099-0.0990.0000.0000.0000.000
150A155ASN0-0.029-0.0015.692-0.756-0.7560.0000.0000.0000.000
151A156LEU00.0310.0216.7460.8970.8970.0000.0000.0000.000
152A157ALA0-0.010-0.0152.030-1.273-1.3222.032-0.502-1.4810.003
153A158VAL0-0.032-0.0203.5810.0410.4330.012-0.005-0.3990.000
154A159ASN0-0.027-0.0263.595-1.600-0.9200.013-0.353-0.340-0.002
155A160GLU-1-0.923-0.9645.7210.5860.5860.0000.0000.0000.000
156A161ASP-1-0.874-0.9298.5320.4960.4960.0000.0000.0000.000
157A162CYS0-0.129-0.0729.049-0.047-0.0470.0000.0000.0000.000
158A163GLU-1-0.826-0.8839.1730.7090.7090.0000.0000.0000.000
159A164LEU0-0.037-0.0307.2810.1450.1450.0000.0000.0000.000
160A165LYS10.8740.9195.791-1.192-1.1920.0000.0000.0000.000
161A166ILE0-0.019-0.0135.9890.0720.0720.0000.0000.0000.000
162A167LEU0-0.008-0.0152.468-4.584-1.1915.212-1.661-6.9440.003
163A168ASP-1-0.848-0.9161.937-2.480-0.7057.545-3.753-5.5660.030
164A169PHE00.0300.0182.843-7.796-5.8881.368-0.120-3.156-0.008
165A170GLY00.0480.0052.368-5.463-4.4801.795-1.107-1.670-0.020
166A171LEU0-0.0090.0062.421-2.104-1.1962.228-0.823-2.3130.009
167A172ALA0-0.014-0.0015.406-0.051-0.0510.0000.0000.0000.000
168A173ARG10.8590.9258.1430.6740.6740.0000.0000.0000.000
169A174HIS00.0240.00010.9130.0380.0380.0000.0000.0000.000
170A175THR0-0.035-0.02413.592-0.018-0.0180.0000.0000.0000.000
171A176ASP-1-0.809-0.86511.859-0.630-0.6300.0000.0000.0000.000
172A177ASP-1-0.834-0.91013.4310.0780.0780.0000.0000.0000.000
173A178GLU-1-0.802-0.89011.8170.3850.3850.0000.0000.0000.000
174A179MET0-0.0190.0079.9850.0540.0540.0000.0000.0000.000
175A180THR0-0.002-0.00712.6560.1150.1150.0000.0000.0000.000
176A181GLY0-0.038-0.01413.335-0.034-0.0340.0000.0000.0000.000
177A182TYR00.0220.0069.040-0.032-0.0320.0000.0000.0000.000
178A183VAL00.0430.03014.310-0.009-0.0090.0000.0000.0000.000
179A184ALA00.0320.02114.188-0.019-0.0190.0000.0000.0000.000
180A185THR0-0.022-0.01213.8620.0200.0200.0000.0000.0000.000
181A186ARG10.8180.88015.804-0.350-0.3500.0000.0000.0000.000
182A187TRP0-0.068-0.03316.5520.0010.0010.0000.0000.0000.000
183A188TYR00.0280.00814.400-0.008-0.0080.0000.0000.0000.000
184A189ARG10.8360.92912.138-0.451-0.4510.0000.0000.0000.000
185A190ALA00.0440.01917.001-0.038-0.0380.0000.0000.0000.000
186A191PRO00.000-0.00319.056-0.011-0.0110.0000.0000.0000.000
187A192GLU-1-0.769-0.91019.9810.1560.1560.0000.0000.0000.000
188A193ILE0-0.036-0.00914.908-0.018-0.0180.0000.0000.0000.000
189A194MET0-0.060-0.02018.8080.0090.0090.0000.0000.0000.000
190A195LEU0-0.045-0.02320.817-0.014-0.0140.0000.0000.0000.000
191A196ASN0-0.030-0.00820.656-0.014-0.0140.0000.0000.0000.000
192A197TRP0-0.052-0.02122.686-0.022-0.0220.0000.0000.0000.000
193A198MET0-0.030-0.02423.636-0.002-0.0020.0000.0000.0000.000
194A199HIS00.0370.02122.0150.0110.0110.0000.0000.0000.000
195A200TYR00.0110.02214.6090.0060.0060.0000.0000.0000.000
196A201ASN00.0710.09917.576-0.005-0.0050.0000.0000.0000.000
197A202GLN00.102-0.03313.6990.0740.0740.0000.0000.0000.000
198A203THR0-0.045-0.08414.8770.0640.0640.0000.0000.0000.000
199A204VAL0-0.020-0.00913.4630.0320.0320.0000.0000.0000.000
200A205ASP-1-0.687-0.83810.8350.5660.5660.0000.0000.0000.000
201A206ILE0-0.026-0.00513.7840.0540.0540.0000.0000.0000.000
202A207TRP00.0260.01717.116-0.023-0.0230.0000.0000.0000.000
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