Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: P9M72

Calculation Name: 1TP6-A-Xray31

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1TP6

Chain ID: A

ChEMBL ID:

UniProt ID: Q9I430

Base Structure: X-ray

Registration Date: 2018-09-06

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 220
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1306315.55653
FMO2-HF: Nuclear repulsion 1249868.154922
FMO2-HF: Total energy -56447.401609
FMO2-MP2: Total energy -56609.361978


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:ACE)


Summations of interaction energy for fragment #1(A:2:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
1.7683.2931.045-1.246-1.323-0.002
Interaction energy analysis for fragmet #1(A:2:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.038 / q_NPA : 0.011
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4ALA00.0870.0413.8410.8481.732-0.012-0.428-0.4430.000
4A5TYR00.0870.0207.2060.3060.3060.0000.0000.0000.000
5A6ARG10.9380.9592.634-1.967-1.7331.015-0.582-0.667-0.002
6A7ARG10.8770.9345.5660.7500.7500.0000.0000.0000.000
7A8GLU-1-0.719-0.8276.712-0.011-0.0110.0000.0000.0000.000
8A9ILE0-0.0010.0078.7820.0650.0650.0000.0000.0000.000
9A10HIS0-0.058-0.0397.478-0.009-0.0090.0000.0000.0000.000
10A11HIS0-0.010-0.0309.394-0.070-0.0700.0000.0000.0000.000
11A12ALA00.0400.03412.078-0.004-0.0040.0000.0000.0000.000
12A13HIS10.8540.92213.215-0.127-0.1270.0000.0000.0000.000
13A14VAL0-0.0120.01712.9830.0000.0000.0000.0000.0000.000
14A15ALA00.0080.01615.690-0.012-0.0120.0000.0000.0000.000
15A16ILE00.0140.01617.847-0.007-0.0070.0000.0000.0000.000
16A17ARG10.8090.88116.511-0.170-0.1700.0000.0000.0000.000
17A18ASP-1-0.750-0.83319.5720.1000.1000.0000.0000.0000.000
18A19TRP0-0.049-0.02821.697-0.008-0.0080.0000.0000.0000.000
19A20LEU00.0010.00122.787-0.005-0.0050.0000.0000.0000.000
20A21ALA0-0.0080.01024.029-0.004-0.0040.0000.0000.0000.000
21A22GLY0-0.0150.01025.733-0.002-0.0020.0000.0000.0000.000
22A23ASP-1-0.911-0.92723.5710.0780.0780.0000.0000.0000.000
23A24SER0-0.029-0.02523.4490.0040.0040.0000.0000.0000.000
24A25ARG10.9320.96821.527-0.013-0.0130.0000.0000.0000.000
25A26ALA00.001-0.01824.933-0.001-0.0010.0000.0000.0000.000
26A27ASP-1-0.859-0.93426.707-0.013-0.0130.0000.0000.0000.000
27A28ALA0-0.023-0.00123.934-0.004-0.0040.0000.0000.0000.000
28A29LEU00.0240.02123.821-0.002-0.0020.0000.0000.0000.000
29A30ASP-1-0.821-0.91025.003-0.014-0.0140.0000.0000.0000.000
30A31ALA0-0.016-0.00421.774-0.007-0.0070.0000.0000.0000.000
31A32LEU0-0.034-0.00719.463-0.009-0.0090.0000.0000.0000.000
32A33MET00.006-0.01021.012-0.007-0.0070.0000.0000.0000.000
33A34ALA0-0.0240.00222.216-0.007-0.0070.0000.0000.0000.000
34A35ARG10.8240.91813.7400.0400.0400.0000.0000.0000.000
35A36PHE0-0.051-0.02119.067-0.013-0.0130.0000.0000.0000.000
36A37ALA00.0530.03421.5170.0010.0010.0000.0000.0000.000
37A38GLU-1-0.880-0.93823.130-0.043-0.0430.0000.0000.0000.000
38A39ASP-1-0.797-0.89025.155-0.066-0.0660.0000.0000.0000.000
39A40PHE0-0.024-0.00120.2580.0010.0010.0000.0000.0000.000
40A41SER00.0180.02023.7700.0040.0040.0000.0000.0000.000
41A42MET0-0.042-0.01622.269-0.003-0.0030.0000.0000.0000.000
42A43VAL00.0050.00723.7590.0010.0010.0000.0000.0000.000
43A44THR00.024-0.01824.0010.0050.0050.0000.0000.0000.000
44A45PRO00.0200.00923.599-0.003-0.0030.0000.0000.0000.000
45A46HIS0-0.014-0.00226.077-0.002-0.0020.0000.0000.0000.000
46A47GLY0-0.0050.00628.286-0.003-0.0030.0000.0000.0000.000
47A48VAL0-0.024-0.00429.279-0.004-0.0040.0000.0000.0000.000
48A49VAL00.0060.00228.4560.0010.0010.0000.0000.0000.000
49A50LEU0-0.042-0.02126.6960.0020.0020.0000.0000.0000.000
50A51ASP-1-0.752-0.85227.152-0.017-0.0170.0000.0000.0000.000
51A52LYS10.8490.89724.8620.0490.0490.0000.0000.0000.000
52A53THR0-0.014-0.00827.3240.0040.0040.0000.0000.0000.000
53A54ALA00.0200.02330.1680.0040.0040.0000.0000.0000.000
54A55LEU0-0.0280.00622.7700.0060.0060.0000.0000.0000.000
55A56GLY00.0560.01927.4270.0060.0060.0000.0000.0000.000
56A57GLU-1-0.805-0.86528.4710.0030.0030.0000.0000.0000.000
57A58LEU0-0.0080.00427.1860.0040.0040.0000.0000.0000.000
58A59PHE00.050-0.00921.9410.0060.0060.0000.0000.0000.000
59A60ARG10.9140.97227.682-0.005-0.0050.0000.0000.0000.000
60A61SER0-0.030-0.01130.6020.0040.0040.0000.0000.0000.000
61A62LYS10.9270.97228.279-0.029-0.0290.0000.0000.0000.000
62A63GLY00.0370.05328.0340.0060.0060.0000.0000.0000.000
63A64GLY00.0700.01827.901-0.003-0.0030.0000.0000.0000.000
64A65THR0-0.078-0.04629.3620.0020.0020.0000.0000.0000.000
65A66ARG10.7870.90124.176-0.083-0.0830.0000.0000.0000.000
66A67PRO00.0740.04926.6030.0080.0080.0000.0000.0000.000
67A68GLY00.0330.03525.6360.0020.0020.0000.0000.0000.000
68A69LEU0-0.054-0.00421.7020.0110.0110.0000.0000.0000.000
69A70ARG10.9410.97419.577-0.153-0.1530.0000.0000.0000.000
70A71ILE0-0.004-0.01315.655-0.009-0.0090.0000.0000.0000.000
71A72GLU-1-0.954-0.96913.1400.4820.4820.0000.0000.0000.000
72A73ILE0-0.030-0.0149.864-0.056-0.0560.0000.0000.0000.000
73A74ASP-1-0.811-0.8599.5980.5070.5070.0000.0000.0000.000
74A75GLY00.0470.01210.337-0.095-0.0950.0000.0000.0000.000
75A76GLU-1-0.815-0.9176.6160.9230.9230.0000.0000.0000.000
76A77SER0-0.046-0.0228.4680.0180.0180.0000.0000.0000.000
77A78LEU0-0.024-0.0188.519-0.035-0.0350.0000.0000.0000.000
78A79LEU0-0.024-0.01510.3180.0180.0180.0000.0000.0000.000
79A80ALA00.0240.01013.8000.0100.0100.0000.0000.0000.000
80A81SER0-0.032-0.01712.410-0.056-0.0560.0000.0000.0000.000
81A82GLY00.0270.01214.5140.0210.0210.0000.0000.0000.000
82A83VAL00.0230.00816.291-0.043-0.0430.0000.0000.0000.000
83A84ASP-1-0.744-0.82118.714-0.174-0.1740.0000.0000.0000.000
84A85GLY00.0050.00915.1760.0150.0150.0000.0000.0000.000
85A86ALA0-0.028-0.01812.065-0.030-0.0300.0000.0000.0000.000
86A87THR0-0.026-0.00514.0510.0400.0400.0000.0000.0000.000
87A88LEU0-0.051-0.0318.460-0.036-0.0360.0000.0000.0000.000
88A89ALA00.0390.02811.9580.0140.0140.0000.0000.0000.000
89A90TYR0-0.017-0.01010.8320.0310.0310.0000.0000.0000.000
90A91ARG10.7870.87112.551-0.306-0.3060.0000.0000.0000.000
91A92GLU-1-0.705-0.82213.7590.1620.1620.0000.0000.0000.000
92A93ILE0-0.032-0.00616.220-0.030-0.0300.0000.0000.0000.000
93A94GLN0-0.048-0.04218.3580.0040.0040.0000.0000.0000.000
94A95SER0-0.013-0.01621.045-0.009-0.0090.0000.0000.0000.000
95A96ASP-1-0.747-0.85923.6090.0900.0900.0000.0000.0000.000
96A97ALA00.0190.01226.5330.0010.0010.0000.0000.0000.000
97A98ALA0-0.060-0.01429.912-0.003-0.0030.0000.0000.0000.000
98A99GLY00.0460.03228.751-0.004-0.0040.0000.0000.0000.000
99A100ARG10.8740.92720.761-0.147-0.1470.0000.0000.0000.000
100A101SER0-0.0200.01723.158-0.011-0.0110.0000.0000.0000.000
101A102GLU-1-0.853-0.94719.3120.1740.1740.0000.0000.0000.000
102A103ARG10.8540.92719.079-0.105-0.1050.0000.0000.0000.000
103A104LEU00.0110.00317.0830.0250.0250.0000.0000.0000.000
104A105SER0-0.003-0.02515.769-0.015-0.0150.0000.0000.0000.000
105A106THR0-0.026-0.00715.8300.0030.0030.0000.0000.0000.000
106A107VAL0-0.019-0.01212.8960.0040.0040.0000.0000.0000.000
107A108VAL00.0030.01215.165-0.023-0.0230.0000.0000.0000.000
108A109LEU0-0.033-0.02711.4450.0080.0080.0000.0000.0000.000
109A110HIS00.0260.01715.581-0.024-0.0240.0000.0000.0000.000
110A111ARG10.8660.92014.4510.3370.3370.0000.0000.0000.000
111A112ASP-1-0.704-0.81216.981-0.185-0.1850.0000.0000.0000.000
112A113ASP-1-0.909-0.96918.011-0.234-0.2340.0000.0000.0000.000
113A114GLU-1-0.911-0.94418.853-0.193-0.1930.0000.0000.0000.000
114A115GLY0-0.088-0.03514.815-0.026-0.0260.0000.0000.0000.000
115A116ARG10.8150.89314.0990.1200.1200.0000.0000.0000.000
116A117LEU0-0.014-0.01110.981-0.014-0.0140.0000.0000.0000.000
117A118TYR00.0120.02215.5320.0340.0340.0000.0000.0000.000
118A119TRP0-0.086-0.05113.624-0.003-0.0030.0000.0000.0000.000
119A120ARG10.9500.96918.2510.0730.0730.0000.0000.0000.000
120A121HIS0-0.0020.00119.3320.0080.0080.0000.0000.0000.000
121A122LEU00.0160.00817.161-0.007-0.0070.0000.0000.0000.000
122A123GLN00.0190.03919.562-0.006-0.0060.0000.0000.0000.000
123A124GLU-1-0.739-0.86519.5180.0700.0700.0000.0000.0000.000
124A125THR0-0.045-0.02221.388-0.010-0.0100.0000.0000.0000.000
125A126PHE00.0190.00622.3540.0140.0140.0000.0000.0000.000
126A127CYS0-0.0250.00120.931-0.006-0.0060.0000.0000.0000.000
127A128GLY-1-0.828-0.89724.4610.0680.0680.0000.0000.0000.000
128A525HOH0-0.025-0.02617.263-0.001-0.0010.0000.0000.0000.000
129A526HOH0-0.041-0.02833.704-0.001-0.0010.0000.0000.0000.000
130A528HOH00.0060.00026.8720.0020.0020.0000.0000.0000.000
131A529HOH0-0.030-0.02435.9560.0000.0000.0000.0000.0000.000
132A531HOH0-0.012-0.00219.938-0.006-0.0060.0000.0000.0000.000
133A532HOH0-0.035-0.02632.623-0.001-0.0010.0000.0000.0000.000
134A533HOH0-0.024-0.02421.1920.0010.0010.0000.0000.0000.000
135A534HOH0-0.053-0.04621.766-0.006-0.0060.0000.0000.0000.000
136A535HOH0-0.041-0.03527.4500.0020.0020.0000.0000.0000.000
137A538HOH00.0300.02417.314-0.003-0.0030.0000.0000.0000.000
138A539HOH00.0370.02126.336-0.001-0.0010.0000.0000.0000.000
139A540HOH0-0.005-0.00921.0670.0050.0050.0000.0000.0000.000
140A541HOH00.0170.01530.2880.0020.0020.0000.0000.0000.000
141A542HOH00.0380.03129.8070.0000.0000.0000.0000.0000.000
142A543HOH0-0.054-0.02932.364-0.001-0.0010.0000.0000.0000.000
143A544HOH0-0.0190.01021.4440.0050.0050.0000.0000.0000.000
144A545HOH0-0.065-0.04833.6950.0000.0000.0000.0000.0000.000
145A546HOH0-0.003-0.00831.853-0.001-0.0010.0000.0000.0000.000
146A547HOH0-0.002-0.00325.2270.0040.0040.0000.0000.0000.000
147A548HOH0-0.003-0.02526.8570.0010.0010.0000.0000.0000.000
148A550HOH0-0.055-0.04523.7310.0040.0040.0000.0000.0000.000
149A551HOH0-0.038-0.03231.1140.0000.0000.0000.0000.0000.000
150A552HOH0-0.054-0.04026.721-0.003-0.0030.0000.0000.0000.000
151A554HOH0-0.010-0.01125.123-0.002-0.0020.0000.0000.0000.000
152A556HOH00.010-0.0019.0560.0300.0300.0000.0000.0000.000
153A558HOH00.0000.01113.573-0.026-0.0260.0000.0000.0000.000
154A559HOH0-0.019-0.00727.208-0.002-0.0020.0000.0000.0000.000
155A560HOH00.0260.01720.069-0.011-0.0110.0000.0000.0000.000
156A561HOH0-0.060-0.04130.281-0.002-0.0020.0000.0000.0000.000
157A562HOH0-0.033-0.0277.8080.1030.1030.0000.0000.0000.000
158A563HOH0-0.026-0.01315.071-0.008-0.0080.0000.0000.0000.000
159A564HOH0-0.038-0.02620.4790.0070.0070.0000.0000.0000.000
160A565HOH0-0.0040.00628.8950.0020.0020.0000.0000.0000.000
161A567HOH0-0.038-0.02423.0320.0000.0000.0000.0000.0000.000
162A568HOH00.0250.01725.8190.0030.0030.0000.0000.0000.000
163A569HOH00.0030.00518.796-0.008-0.0080.0000.0000.0000.000
164A570HOH00.0450.02827.9700.0000.0000.0000.0000.0000.000
165A571HOH0-0.004-0.00429.1710.0020.0020.0000.0000.0000.000
166A572HOH0-0.053-0.04536.5540.0000.0000.0000.0000.0000.000
167A573HOH0-0.035-0.02232.483-0.001-0.0010.0000.0000.0000.000
168A574HOH0-0.038-0.03119.7440.0000.0000.0000.0000.0000.000
169A575HOH00.002-0.00221.191-0.004-0.0040.0000.0000.0000.000
170A576HOH00.0010.00617.9460.0010.0010.0000.0000.0000.000
171A577HOH0-0.038-0.04010.5350.0250.0250.0000.0000.0000.000
172A578HOH0-0.027-0.0126.8100.1050.1050.0000.0000.0000.000
173A579HOH00.001-0.00312.5230.0090.0090.0000.0000.0000.000
174A580HOH00.0130.01024.7150.0020.0020.0000.0000.0000.000
175A581HOH0-0.031-0.03127.061-0.002-0.0020.0000.0000.0000.000
176A582HOH0-0.034-0.02827.2890.0000.0000.0000.0000.0000.000
177A583HOH0-0.074-0.06222.061-0.001-0.0010.0000.0000.0000.000
178A584HOH00.0340.02015.035-0.001-0.0010.0000.0000.0000.000
179A585HOH00.0260.01813.936-0.002-0.0020.0000.0000.0000.000
180A586HOH0-0.049-0.01619.216-0.002-0.0020.0000.0000.0000.000
181A587HOH0-0.043-0.03926.597-0.001-0.0010.0000.0000.0000.000
182A588HOH0-0.055-0.06718.8950.0000.0000.0000.0000.0000.000
183A592HOH00.0050.00714.736-0.014-0.0140.0000.0000.0000.000
184A593HOH00.0390.0328.276-0.015-0.0150.0000.0000.0000.000
185A594HOH00.0500.0258.867-0.054-0.0540.0000.0000.0000.000
186A596HOH0-0.008-0.02327.8180.0010.0010.0000.0000.0000.000
187A597HOH0-0.036-0.02834.5210.0000.0000.0000.0000.0000.000
188A598HOH0-0.028-0.01213.347-0.014-0.0140.0000.0000.0000.000
189A599HOH0-0.043-0.02629.820-0.002-0.0020.0000.0000.0000.000
190A601HOH0-0.028-0.03424.718-0.003-0.0030.0000.0000.0000.000
191A602HOH0-0.029-0.02718.565-0.015-0.0150.0000.0000.0000.000
192A603HOH0-0.033-0.02426.8860.0040.0040.0000.0000.0000.000
193A604HOH00.013-0.02528.904-0.002-0.0020.0000.0000.0000.000
194A605HOH00.0390.0258.497-0.047-0.0470.0000.0000.0000.000
195A606HOH0-0.069-0.06218.8360.0050.0050.0000.0000.0000.000
196A607HOH0-0.004-0.00822.6070.0010.0010.0000.0000.0000.000
197A608HOH00.0500.0175.353-0.024-0.0240.0000.0000.0000.000
198A609HOH0-0.047-0.02927.7960.0010.0010.0000.0000.0000.000
199A610HOH0-0.023-0.01432.541-0.001-0.0010.0000.0000.0000.000
200A612HOH00.0240.01514.7390.0040.0040.0000.0000.0000.000
201A613HOH0-0.010-0.00332.942-0.001-0.0010.0000.0000.0000.000
202A614HOH0-0.042-0.02523.729-0.005-0.0050.0000.0000.0000.000
203A615HOH0-0.008-0.01222.7730.0000.0000.0000.0000.0000.000
204A617HOH0-0.027-0.02110.288-0.036-0.0360.0000.0000.0000.000
205A620HOH0-0.016-0.0023.2990.6270.9740.042-0.212-0.1770.000
206A628HOH0-0.039-0.02831.4650.0010.0010.0000.0000.0000.000
207A629HOH0-0.044-0.02915.3310.0090.0090.0000.0000.0000.000
208A632HOH00.0030.00625.5200.0040.0040.0000.0000.0000.000
209A633HOH0-0.043-0.03222.0120.0060.0060.0000.0000.0000.000
210A636HOH00.0370.0167.437-0.141-0.1410.0000.0000.0000.000
211A641HOH00.0550.03719.520-0.005-0.0050.0000.0000.0000.000
212A644HOH00.0180.0065.4880.1500.1500.0000.0000.0000.000
213A645HOH0-0.035-0.03525.4620.0020.0020.0000.0000.0000.000
214A646HOH0-0.024-0.01612.7300.0020.0020.0000.0000.0000.000
215A651HOH00.0280.02310.645-0.026-0.0260.0000.0000.0000.000
216A655HOH0-0.036-0.02112.001-0.037-0.0370.0000.0000.0000.000
217A657HOH0-0.0010.0024.2680.3780.4380.000-0.024-0.0360.000
218A662HOH0-0.028-0.02230.5160.0010.0010.0000.0000.0000.000
219A666HOH0-0.019-0.01927.820-0.002-0.0020.0000.0000.0000.000
220A667HOH00.0300.01728.938-0.002-0.0020.0000.0000.0000.000