FMODB ID: P9R52
Calculation Name: 1L2Y-A-MD49-99600ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-09
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -24840.587247 |
---|---|
FMO2-HF: Nuclear repulsion | 20238.414338 |
FMO2-HF: Total energy | -4602.172909 |
FMO2-MP2: Total energy | -4615.635245 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-43.248 | -38.52 | 6.735 | -5.183 | -6.281 | -0.067 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.032 | 0.029 | 3.296 | 6.077 | 8.032 | 0.002 | -0.757 | -1.200 | -0.001 | |
4 | 4 | GLN | 0 | 0.021 | 0.003 | 1.988 | -22.703 | -21.122 | 6.641 | -3.936 | -4.287 | -0.063 | |
5 | 5 | GLN | 0 | -0.009 | -0.008 | 3.122 | 9.453 | 10.276 | 0.091 | -0.226 | -0.689 | -0.001 | |
6 | 6 | GLN | 0 | -0.017 | -0.007 | 5.663 | 5.799 | 5.799 | 0.000 | 0.000 | 0.000 | 0.000 | |
7 | 7 | GLN | 0 | 0.010 | 0.015 | 8.075 | 2.532 | 2.532 | 0.000 | 0.000 | 0.000 | 0.000 | |
8 | 8 | GLN | 0 | -0.049 | -0.041 | 8.216 | 3.281 | 3.281 | 0.000 | 0.000 | 0.000 | 0.000 | |
9 | 9 | GLN | 0 | -0.094 | -0.041 | 3.570 | -20.240 | -19.871 | 0.001 | -0.264 | -0.105 | -0.002 | |
10 | 10 | GLN | -1 | -0.871 | -0.921 | 6.734 | -27.447 | -27.447 | 0.000 | 0.000 | 0.000 | 0.000 |