Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: P9Y92

Calculation Name: 2AHN-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2AHN

Chain ID: A

ChEMBL ID:

UniProt ID: P50694

Base Structure: X-ray

Registration Date: 2018-03-01

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 214
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2444751.723454
FMO2-HF: Nuclear repulsion 2358772.102077
FMO2-HF: Total energy -85979.621377
FMO2-MP2: Total energy -86216.813287


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:ALA)


Summations of interaction energy for fragment #1(A:1:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-172.77-164.52210.076-7.515-10.807-0.068
Interaction energy analysis for fragmet #1(A:1:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.816 / q_NPA : 0.916
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ILE0-0.042-0.0142.7310.4832.3870.429-0.747-1.585-0.002
4A4SER00.0120.0045.0384.7934.808-0.001-0.004-0.0100.000
5A5PHE0-0.013-0.0228.3101.1141.1140.0000.0000.0000.000
6A6LYS10.8500.91911.21116.81016.8100.0000.0000.0000.000
7A7ASN0-0.012-0.01414.4040.1190.1190.0000.0000.0000.000
8A8ASN0-0.027-0.01517.5830.6960.6960.0000.0000.0000.000
9A221CYS0-0.064-0.01416.8561.0061.0060.0000.0000.0000.000
10A10PRO00.0030.00922.284-0.102-0.1020.0000.0000.0000.000
11A11TYR00.0090.00222.7370.5330.5330.0000.0000.0000.000
12A12MET0-0.030-0.00522.510-0.458-0.4580.0000.0000.0000.000
13A13VAL0-0.0040.00518.0680.3370.3370.0000.0000.0000.000
14A14TRP00.030-0.00519.187-0.206-0.2060.0000.0000.0000.000
15A15PRO0-0.015-0.00113.8860.3360.3360.0000.0000.0000.000
16A16GLY00.0260.02715.1830.6660.6660.0000.0000.0000.000
17A17THR0-0.074-0.05610.521-1.078-1.0780.0000.0000.0000.000
18A18LEU00.0180.01011.6311.5331.5330.0000.0000.0000.000
19A19THR0-0.015-0.00210.739-2.580-2.5800.0000.0000.0000.000
20A20SER00.002-0.00812.1192.1192.1190.0000.0000.0000.000
21A21ASP-1-0.933-0.97914.415-18.267-18.2670.0000.0000.0000.000
22A22GLN0-0.046-0.02317.0240.2770.2770.0000.0000.0000.000
23A23LYS10.9520.99813.08921.22321.2230.0000.0000.0000.000
24A24PRO00.015-0.00312.0040.2540.2540.0000.0000.0000.000
25A25GLN00.0280.02111.412-2.623-2.6230.0000.0000.0000.000
26A26LEU00.0230.0226.861-0.757-0.7570.0000.0000.0000.000
27A27SER0-0.010-0.0039.8652.1022.1020.0000.0000.0000.000
28A28THR00.0420.01911.6852.3602.3600.0000.0000.0000.000
29A29THR00.0640.02912.530-1.167-1.1670.0000.0000.0000.000
30A30GLY00.0120.00314.9540.7390.7390.0000.0000.0000.000
31A31PHE0-0.044-0.02212.3220.3470.3470.0000.0000.0000.000
32A32GLU-1-0.864-0.94017.698-12.925-12.9250.0000.0000.0000.000
33A33LEU0-0.011-0.00514.946-0.630-0.6300.0000.0000.0000.000
34A34ALA00.0530.02318.9410.4600.4600.0000.0000.0000.000
35A35SER0-0.012-0.01720.397-0.535-0.5350.0000.0000.0000.000
36A36GLN00.0420.00920.227-0.202-0.2020.0000.0000.0000.000
37A37ALA0-0.0180.02118.860-0.311-0.3110.0000.0000.0000.000
38A38SER00.001-0.02813.782-0.624-0.6240.0000.0000.0000.000
39A39PHE0-0.019-0.00612.0050.8760.8760.0000.0000.0000.000
40A40GLN0-0.037-0.0188.845-0.645-0.6450.0000.0000.0000.000
41A41LEU0-0.0180.0146.0282.8982.8980.0000.0000.0000.000
42A42ASP-1-0.812-0.8954.598-55.774-55.538-0.001-0.058-0.1780.000
43A43THR0-0.071-0.0261.7078.3987.7036.335-2.772-2.868-0.034
44A44PRO00.001-0.0043.452-8.726-7.7950.015-0.594-0.352-0.004
45A45VAL00.0040.0062.906-10.750-10.1450.112-0.255-0.461-0.002
46A46PRO0-0.047-0.0355.5985.1145.1140.0000.0000.0000.000
47A47TRP0-0.035-0.0485.115-1.455-1.4550.0000.0000.0000.000
48A48ASN0-0.0040.0047.1360.5020.5020.0000.0000.0000.000
49A49GLY00.0430.0219.1671.4611.4610.0000.0000.0000.000
50A50ARG10.9380.9819.87017.86817.8680.0000.0000.0000.000
51A51PHE00.0190.0046.3520.0740.0740.0000.0000.0000.000
52A52TRP00.0260.01311.8060.5920.5920.0000.0000.0000.000
53A53ALA00.0170.01415.149-0.660-0.6600.0000.0000.0000.000
54A54ARG10.7850.89917.58816.07216.0720.0000.0000.0000.000
55A55THR00.0700.03721.120-0.062-0.0620.0000.0000.0000.000
56A56GLY00.0360.00824.2080.2330.2330.0000.0000.0000.000
57A67CYS0-0.067-0.00624.2360.0000.0000.0000.0000.0000.000
58A58SER0-0.034-0.01527.0030.2970.2970.0000.0000.0000.000
59A59THR00.0340.01228.683-0.350-0.3500.0000.0000.0000.000
60A60ASP-1-0.790-0.83730.626-9.065-9.0650.0000.0000.0000.000
61A61ALA00.029-0.00434.064-0.099-0.0990.0000.0000.0000.000
62A62SER0-0.153-0.11034.4560.0860.0860.0000.0000.0000.000
63A63GLY0-0.005-0.01032.041-0.090-0.0900.0000.0000.0000.000
64A64LYS10.9190.97329.8989.1709.1700.0000.0000.0000.000
65A65PHE0-0.035-0.02622.8070.1520.1520.0000.0000.0000.000
66A66VAL0-0.033-0.02427.086-0.121-0.1210.0000.0000.0000.000
67A68ALA0-0.0150.00126.7450.1570.1570.0000.0000.0000.000
68A69THR0-0.057-0.04124.120-0.064-0.0640.0000.0000.0000.000
69A70ALA00.0850.02920.227-0.359-0.3590.0000.0000.0000.000
70A71ASP-1-0.820-0.90121.272-12.665-12.6650.0000.0000.0000.000
71A79CYS00.0330.03717.4070.8340.8340.0000.0000.0000.000
72A73ALA00.0180.00822.1600.0060.0060.0000.0000.0000.000
73A74SER0-0.049-0.03222.3200.4070.4070.0000.0000.0000.000
74A75GLY0-0.0040.00424.5410.3070.3070.0000.0000.0000.000
75A76GLN00.0010.00023.450-0.143-0.1430.0000.0000.0000.000
76A77VAL00.0290.01919.882-0.225-0.2250.0000.0000.0000.000
77A78MET00.0070.02416.805-0.551-0.5510.0000.0000.0000.000
78A80ASN0-0.056-0.04018.622-0.151-0.1510.0000.0000.0000.000
79A81GLY00.0330.01517.4150.3840.3840.0000.0000.0000.000
80A82ASN0-0.047-0.00418.4290.1210.1210.0000.0000.0000.000
81A83GLY0-0.006-0.01618.015-0.903-0.9030.0000.0000.0000.000
82A84ALA0-0.020-0.00918.7180.5720.5720.0000.0000.0000.000
83A85ILE0-0.030-0.02020.3600.1750.1750.0000.0000.0000.000
84A86PRO0-0.0300.01622.8920.0390.0390.0000.0000.0000.000
85A87PRO0-0.074-0.04924.3280.5150.5150.0000.0000.0000.000
86A88ALA0-0.013-0.03619.563-0.032-0.0320.0000.0000.0000.000
87A89THR0-0.0030.00017.0600.1460.1460.0000.0000.0000.000
88A90LEU0-0.048-0.00714.835-0.734-0.7340.0000.0000.0000.000
89A91ALA00.0310.01110.4430.2440.2440.0000.0000.0000.000
90A92GLU-1-0.902-0.92310.624-19.983-19.9830.0000.0000.0000.000
91A93PHE00.0310.0035.577-1.256-1.2560.0000.0000.0000.000
92A94ASN00.0040.0038.096-0.005-0.0050.0000.0000.0000.000
93A95ILE0-0.0080.0042.419-1.198-0.9981.267-0.383-1.085-0.001
94A96PRO00.0110.0186.4890.5580.5580.0000.0000.0000.000
95A97ALA00.026-0.0076.868-4.558-4.5580.0000.0000.0000.000
96A98GLY0-0.002-0.0118.5961.8331.8330.0000.0000.0000.000
97A99GLY0-0.0140.0008.1671.9051.9050.0000.0000.0000.000
98A100GLY00.0100.0079.1441.8411.8410.0000.0000.0000.000
99A101GLN00.007-0.0129.243-1.837-1.8370.0000.0000.0000.000
100A102ASP-1-0.772-0.8704.529-48.162-48.013-0.001-0.011-0.1370.000
101A103PHE0-0.044-0.0038.0492.9612.9610.0000.0000.0000.000
102A104TYR0-0.058-0.0527.852-2.603-2.6030.0000.0000.0000.000
103A105ASH0-0.066-0.0739.9671.5131.5130.0000.0000.0000.000
104A106VAL00.0440.02612.289-1.146-1.1460.0000.0000.0000.000
105A107SER0-0.0020.00914.8511.2481.2480.0000.0000.0000.000
106A108LEU00.0380.00717.590-0.086-0.0860.0000.0000.0000.000
107A109VAL0-0.012-0.00120.1820.7810.7810.0000.0000.0000.000
108A110ASP-1-0.856-0.92120.453-13.493-13.4930.0000.0000.0000.000
109A111GLY0-0.010-0.02222.4000.3170.3170.0000.0000.0000.000
110A112PHE00.0070.00721.857-0.603-0.6030.0000.0000.0000.000
111A113ASN0-0.030-0.05120.8110.2020.2020.0000.0000.0000.000
112A114LEU0-0.037-0.00918.3660.4990.4990.0000.0000.0000.000
113A115PRO00.0540.03520.099-0.493-0.4930.0000.0000.0000.000
114A116MET0-0.030-0.01514.666-0.815-0.8150.0000.0000.0000.000
115A117SER00.0150.01514.0570.1760.1760.0000.0000.0000.000
116A118VAL00.0120.0027.950-1.071-1.0710.0000.0000.0000.000
117A119THR0-0.011-0.0069.4631.6581.6580.0000.0000.0000.000
118A120PRO00.0200.0176.862-2.530-2.5300.0000.0000.0000.000
119A121GLN0-0.031-0.0166.613-0.042-0.0420.0000.0000.0000.000
120A122GLY0-0.003-0.0027.127-3.632-3.6320.0000.0000.0000.000
121A123GLY00.0350.0138.866-0.571-0.5710.0000.0000.0000.000
122A124THR0-0.047-0.0369.4812.8842.8840.0000.0000.0000.000
123A125GLY00.0280.01012.026-0.989-0.9890.0000.0000.0000.000
124A126ASP-1-0.904-0.95214.569-16.259-16.2590.0000.0000.0000.000
125A210CYS0-0.086-0.0178.1070.8240.8240.0000.0000.0000.000
126A128LYS10.9560.98712.39616.19516.1950.0000.0000.0000.000
127A129THR00.0110.01512.657-1.543-1.5430.0000.0000.0000.000
128A130ALA00.0070.01912.4321.1481.1480.0000.0000.0000.000
129A131SER00.004-0.02913.942-0.701-0.7010.0000.0000.0000.000
130A193CYS0-0.104-0.03116.4850.6150.6150.0000.0000.0000.000
131A133PRO00.0680.02019.484-0.100-0.1000.0000.0000.0000.000
132A134ALA00.0330.02720.8850.4020.4020.0000.0000.0000.000
133A135ASN00.038-0.00123.930-0.469-0.4690.0000.0000.0000.000
134A136VAL00.0520.02124.3390.4860.4860.0000.0000.0000.000
135A137ASN00.003-0.00226.8480.3030.3030.0000.0000.0000.000
136A138ALA0-0.066-0.02829.3100.3350.3350.0000.0000.0000.000
137A139VAL0-0.010-0.00229.6950.3180.3180.0000.0000.0000.000
138A156CYS0-0.0620.01326.6140.6120.6120.0000.0000.0000.000
139A141PRO00.0690.04432.0690.2630.2630.0000.0000.0000.000
140A142SER00.021-0.00634.710-0.163-0.1630.0000.0000.0000.000
141A143GLU-1-0.858-0.90735.398-8.369-8.3690.0000.0000.0000.000
142A144LEU0-0.024-0.02430.301-0.062-0.0620.0000.0000.0000.000
143A145GLN0-0.034-0.02131.204-0.217-0.2170.0000.0000.0000.000
144A146LYS10.9490.99028.46610.40410.4040.0000.0000.0000.000
145A147LYS10.9030.95431.8158.0338.0330.0000.0000.0000.000
146A148GLY00.0360.02933.921-0.140-0.1400.0000.0000.0000.000
147A149SER0-0.020-0.02434.4770.1370.1370.0000.0000.0000.000
148A150ASP-1-0.863-0.92036.490-8.397-8.3970.0000.0000.0000.000
149A151GLY0-0.036-0.01637.8090.1620.1620.0000.0000.0000.000
150A152SER0-0.071-0.03134.223-0.112-0.1120.0000.0000.0000.000
151A153VAL00.011-0.00430.658-0.021-0.0210.0000.0000.0000.000
152A154VAL0-0.033-0.02028.913-0.178-0.1780.0000.0000.0000.000
153A155ALA0-0.014-0.01726.191-0.473-0.4730.0000.0000.0000.000
154A157LEU00.005-0.00326.488-0.472-0.4720.0000.0000.0000.000
155A158SER00.0790.03225.2720.2850.2850.0000.0000.0000.000
156A159ALA00.0270.00327.4030.2360.2360.0000.0000.0000.000
157A169CYS0-0.101-0.03126.694-0.144-0.1440.0000.0000.0000.000
158A161VAL00.0320.01425.5900.2200.2200.0000.0000.0000.000
159A162LYS10.8480.94328.5518.9238.9230.0000.0000.0000.000
160A163PHE0-0.033-0.02932.0660.3120.3120.0000.0000.0000.000
161A164GLY00.0080.01630.9940.2320.2320.0000.0000.0000.000
162A165THR0-0.016-0.01032.076-0.048-0.0480.0000.0000.0000.000
163A166PRO00.0310.00431.784-0.253-0.2530.0000.0000.0000.000
164A167GLN00.0110.00631.460-0.145-0.1450.0000.0000.0000.000
165A168TYR0-0.005-0.01330.289-0.130-0.1300.0000.0000.0000.000
166A180CYS0-0.109-0.00526.509-0.295-0.2950.0000.0000.0000.000
167A171THR00.0410.02927.849-0.213-0.2130.0000.0000.0000.000
168A172PRO00.0210.01129.6880.2090.2090.0000.0000.0000.000
169A173PRO0-0.036-0.02232.5800.0880.0880.0000.0000.0000.000
170A174GLN0-0.047-0.05932.4070.2610.2610.0000.0000.0000.000
171A175ASN00.0400.02628.4510.0030.0030.0000.0000.0000.000
172A176THR0-0.0020.00528.176-0.291-0.2910.0000.0000.0000.000
173A177PRO00.0850.02425.7810.1800.1800.0000.0000.0000.000
174A178GLU-1-0.940-0.95728.373-9.060-9.0600.0000.0000.0000.000
175A179THR0-0.043-0.02831.9610.2350.2350.0000.0000.0000.000
176A181PRO00.0590.04829.461-0.387-0.3870.0000.0000.0000.000
177A182PRO00.0590.03029.278-0.031-0.0310.0000.0000.0000.000
178A183THR0-0.015-0.01730.5180.4140.4140.0000.0000.0000.000
179A184ASN00.008-0.01432.110-0.182-0.1820.0000.0000.0000.000
180A185TYR0-0.016-0.03130.855-0.082-0.0820.0000.0000.0000.000
181A186SER00.0190.01327.181-0.083-0.0830.0000.0000.0000.000
182A187GLU-1-0.853-0.93527.805-10.262-10.2620.0000.0000.0000.000
183A188ILE0-0.026-0.00429.681-0.108-0.1080.0000.0000.0000.000
184A189PHE0-0.051-0.03324.666-0.135-0.1350.0000.0000.0000.000
185A190HIS00.0050.00924.707-0.616-0.6160.0000.0000.0000.000
186A191ASN0-0.033-0.01425.995-0.104-0.1040.0000.0000.0000.000
187A192ALA0-0.060-0.02626.431-0.008-0.0080.0000.0000.0000.000
188A194PRO00.0980.07022.376-0.433-0.4330.0000.0000.0000.000
189A195ASP-1-0.917-0.94618.015-14.483-14.4830.0000.0000.0000.000
190A196ALA0-0.023-0.01917.455-1.171-1.1710.0000.0000.0000.000
191A197TYR0-0.022-0.00115.1570.5830.5830.0000.0000.0000.000
192A198SER0-0.016-0.03020.0260.1420.1420.0000.0000.0000.000
193A199TYR00.000-0.05423.0410.3550.3550.0000.0000.0000.000
194A200ALA0-0.0010.01221.965-0.504-0.5040.0000.0000.0000.000
195A201TYR0-0.063-0.05221.995-0.813-0.8130.0000.0000.0000.000
196A202ASP-1-0.768-0.85521.480-12.825-12.8250.0000.0000.0000.000
197A203ASP-1-0.888-0.93522.352-12.241-12.2410.0000.0000.0000.000
198A204LYS10.8450.91419.42913.34013.3400.0000.0000.0000.000
199A205ARG10.9150.96618.06113.68113.6810.0000.0000.0000.000
200A206GLY0-0.047-0.02515.5610.4180.4180.0000.0000.0000.000
201A207THR0-0.051-0.05316.111-0.357-0.3570.0000.0000.0000.000
202A208PHE0-0.045-0.01112.7210.3070.3070.0000.0000.0000.000
203A209THR0-0.001-0.01510.806-0.799-0.7990.0000.0000.0000.000
204A211ASN00.0240.0048.547-2.389-2.3890.0000.0000.0000.000
205A212GLY0-0.011-0.0088.984-0.111-0.1110.0000.0000.0000.000
206A213GLY0-0.027-0.0074.724-0.206-0.163-0.001-0.007-0.0340.000
207A214PRO0-0.0240.0084.357-4.097-3.843-0.001-0.052-0.2010.000
208A215ASN00.0160.0082.507-31.048-26.9811.299-2.393-2.973-0.023
209A216TYR0-0.018-0.0512.4087.9538.5280.625-0.238-0.962-0.002
210A217ALA00.0040.0194.969-0.944-0.980-0.001-0.0010.0390.000
211A218ILE0-0.014-0.0127.7140.9800.9800.0000.0000.0000.000
212A219THR0-0.020-0.00110.1860.6010.6010.0000.0000.0000.000
213A220PHE00.026-0.00313.4740.2900.2900.0000.0000.0000.000
214A222PRO-1-0.892-0.93216.657-13.802-13.8020.0000.0000.0000.000