FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: P9Z2X

Calculation Name: 3OLS-A-Xray11

Preferred Name: Estrogen receptor beta

Target Type: SINGLE PROTEIN

Ligand Name: estradiol

ligand 3-letter code: EST

PDB ID: 3OLS

Chain ID: A

ChEMBL ID: CHEMBL242

UniProt ID: Q92731

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.2017021
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 235
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3060677.228517
FMO2-HF: Nuclear repulsion 2964281.211449
FMO2-HF: Total energy -96396.017069
FMO2-MP2: Total energy -96666.516013


3D Structure
Snapshot
 
Ligand structure

EST

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-86.749-57.94359.701-24.186-64.3220.075


Interactive mode: IFIE and PIEDA for fragment #235(C:600:EST)


Summations of interaction energy for fragment #235(C:600:EST)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-86.749-57.94359.701-24.186-64.322-0.075
Interaction energy analysis for fragmet #235(C:600:EST)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.073 / q_NPA : -0.065
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1C264SER10.7060.82325.995-0.136-0.1360.0000.0000.0000.000
2C265PRO00.0710.02926.1640.0100.0100.0000.0000.0000.000
3C266GLU-1-0.712-0.85524.6290.1430.1430.0000.0000.0000.000
4C267GLN00.0540.04524.5810.0080.0080.0000.0000.0000.000
5C268LEU00.0120.03221.151-0.006-0.0060.0000.0000.0000.000
6C269VAL00.0190.00320.1640.0090.0090.0000.0000.0000.000
7C270LEU0-0.0160.00019.7530.0100.0100.0000.0000.0000.000
8C271THR00.018-0.00920.205-0.009-0.0090.0000.0000.0000.000
9C272LEU0-0.020-0.01816.143-0.005-0.0050.0000.0000.0000.000
10C273LEU0-0.029-0.01015.5330.0110.0110.0000.0000.0000.000
11C274GLU-1-0.924-0.96916.0680.0200.0200.0000.0000.0000.000
12C275ALA00.0170.01014.994-0.034-0.0340.0000.0000.0000.000
13C276GLU-1-0.747-0.82210.8020.2570.2570.0000.0000.0000.000
14C277PRO0-0.0040.0107.623-0.025-0.0250.0000.0000.0000.000
15C278PRO0-0.016-0.01210.2330.0560.0560.0000.0000.0000.000
16C279HIS0-0.033-0.0226.461-0.395-0.3950.0000.0000.0000.000
17C280VAL00.0060.0075.8260.4620.4620.0000.0000.0000.000
18C281LEU0-0.015-0.0127.5170.1470.1470.0000.0000.0000.000
19C282ILE0-0.027-0.0147.422-0.005-0.0050.0000.0000.0000.000
20C283SER00.001-0.01210.4340.0570.0570.0000.0000.0000.000
21C284ARG10.7980.84610.955-0.138-0.1380.0000.0000.0000.000
22C285PRO0-0.025-0.00211.041-0.024-0.0240.0000.0000.0000.000
23C286SER0-0.0060.00613.8990.0240.0240.0000.0000.0000.000
24C287ALA0-0.007-0.00216.2530.0110.0110.0000.0000.0000.000
25C288PRO00.0210.00015.484-0.005-0.0050.0000.0000.0000.000
26C289PHE00.0000.0139.863-0.009-0.0090.0000.0000.0000.000
27C290THR00.004-0.01311.981-0.001-0.0010.0000.0000.0000.000
28C291GLU-1-0.751-0.8768.373-0.876-0.8760.0000.0000.0000.000
29C292ALA00.0760.0308.4830.0230.0230.0000.0000.0000.000
30C293SER0-0.024-0.0129.4330.0860.0860.0000.0000.0000.000
31C294MET0-0.0060.0196.239-0.038-0.0380.0000.0000.0000.000
32C295MET00.0560.0292.477-3.798-2.4742.641-0.924-3.0410.009
33C296MET0-0.0120.0285.1110.1990.335-0.001-0.002-0.1330.000
34C297SER0-0.020-0.0336.994-0.132-0.1320.0000.0000.0000.000
35C298LEU0-0.009-0.0032.296-3.030-0.7982.153-0.710-3.6740.000
36C299THR00.001-0.0302.575-6.813-3.2441.939-1.837-3.671-0.029
37C300LYS10.7620.8674.056-0.0900.1030.001-0.013-0.1820.000
38C301LEU0-0.0030.0052.274-1.356-0.0241.506-0.549-2.2890.003
39C302ALA00.0160.0042.281-3.024-1.0572.818-1.483-3.3030.005
40C303ASP-1-0.724-0.8573.549-0.0040.0360.0640.198-0.3020.001
41C304LYS10.7960.8966.5920.5300.5300.0000.0000.0000.000
42C305GLU-1-0.755-0.8561.721-24.001-27.51611.008-4.241-3.251-0.050
43C306LEU00.0310.0215.5500.6920.6920.0000.0000.0000.000
44C307VAL0-0.003-0.0037.9620.1170.1170.0000.0000.0000.000
45C308HIS0-0.010-0.0107.3020.3150.3150.0000.0000.0000.000
46C309MET0-0.0250.0216.9710.0840.0840.0000.0000.0000.000
47C310ILE00.0130.0079.8350.0760.0760.0000.0000.0000.000
48C311SER0-0.055-0.03312.5460.0160.0160.0000.0000.0000.000
49C312TRP0-0.031-0.02410.8250.0860.0860.0000.0000.0000.000
50C313ALA00.021-0.00112.9550.0160.0160.0000.0000.0000.000
51C314LYS10.8690.91715.174-0.108-0.1080.0000.0000.0000.000
52C315LYS10.8240.93214.3400.0280.0280.0000.0000.0000.000
53C316ILE0-0.0280.00215.440-0.001-0.0010.0000.0000.0000.000
54C317PRO00.0210.00119.3400.0020.0020.0000.0000.0000.000
55C318GLY00.0230.00722.4690.0140.0140.0000.0000.0000.000
56C319PHE00.0270.00617.1070.0000.0000.0000.0000.0000.000
57C320VAL0-0.035-0.02220.755-0.001-0.0010.0000.0000.0000.000
58C321GLU-1-0.905-0.95522.6380.0770.0770.0000.0000.0000.000
59C322LEU0-0.0160.01621.645-0.003-0.0030.0000.0000.0000.000
60C323SER00.002-0.02925.404-0.008-0.0080.0000.0000.0000.000
61C324LEU0-0.004-0.01023.6850.0110.0110.0000.0000.0000.000
62C325PHE00.0850.03022.0980.0060.0060.0000.0000.0000.000
63C326ASP-1-0.742-0.81820.7390.1720.1720.0000.0000.0000.000
64C327GLN0-0.069-0.03119.9630.0210.0210.0000.0000.0000.000
65C328VAL0-0.0200.00316.3200.0080.0080.0000.0000.0000.000
66C329ARG10.8870.94115.988-0.119-0.1190.0000.0000.0000.000
67C330LEU0-0.036-0.01516.4260.0200.0200.0000.0000.0000.000
68C331LEU00.0090.00712.2250.0630.0630.0000.0000.0000.000
69C332GLU-1-0.903-0.97011.5860.4040.4040.0000.0000.0000.000
70C333SER0-0.049-0.01911.3510.0540.0540.0000.0000.0000.000
71C334CYS0-0.039-0.00810.5080.0190.0190.0000.0000.0000.000
72C335TRP00.0760.0163.900-0.2720.2830.004-0.056-0.5040.000
73C336MET00.0080.0192.521-1.729-0.8123.484-0.717-3.684-0.001
74C337GLU-1-0.788-0.8864.1960.7941.0110.000-0.039-0.1780.000
75C338VAL0-0.007-0.0176.5750.1980.1980.0000.0000.0000.000
76C339LEU0-0.029-0.0012.671-4.348-1.0272.646-1.522-4.4450.014
77C340MET0-0.0200.0002.306-1.3530.6822.816-1.094-3.756-0.003
78C341MET0-0.016-0.0063.467-0.159-0.1370.0090.149-0.1800.000
79C342GLY0-0.0070.0035.128-0.600-0.540-0.001-0.007-0.0530.000
80C343LEU00.0090.0152.422-4.356-2.1973.395-1.258-4.2960.008
81C344MET0-0.0100.0024.412-1.342-1.1560.000-0.038-0.1480.000
82C345TRP00.001-0.0017.265-0.364-0.3640.0000.0000.0000.000
83C346ARG10.7090.8032.4843.0834.1040.148-0.462-0.7070.001
84C347SER00.014-0.0067.508-0.181-0.1810.0000.0000.0000.000
85C348ILE00.0010.01610.136-0.117-0.1170.0000.0000.0000.000
86C349ASP-1-0.873-0.94412.7950.3180.3180.0000.0000.0000.000
87C350HIS0-0.039-0.01612.589-0.072-0.0720.0000.0000.0000.000
88C351PRO0-0.015-0.00313.5150.0510.0510.0000.0000.0000.000
89C352GLY00.0020.00013.477-0.006-0.0060.0000.0000.0000.000
90C353LYS10.8190.88311.183-0.258-0.2580.0000.0000.0000.000
91C354LEU0-0.0060.0085.0250.0420.0420.0000.0000.0000.000
92C355ILE0-0.0020.0038.350-0.057-0.0570.0000.0000.0000.000
93C356PHE00.0280.0052.324-4.862-1.1602.851-1.230-5.3230.012
94C357ALA00.0150.0144.924-1.755-1.635-0.001-0.007-0.1120.000
95C358PRO0-0.032-0.0257.7020.2450.2450.0000.0000.0000.000
96C359ASP-1-0.820-0.89111.303-0.019-0.0190.0000.0000.0000.000
97C360LEU0-0.0390.0046.2330.0500.0500.0000.0000.0000.000
98C361VAL0-0.006-0.0058.8060.2920.2920.0000.0000.0000.000
99C362LEU0-0.0150.0006.561-0.152-0.1520.0000.0000.0000.000
100C363ASP-1-0.785-0.8829.9990.3230.3230.0000.0000.0000.000
101C364ARG10.7930.8629.480-0.011-0.0110.0000.0000.0000.000
102C365ASP-1-0.809-0.88410.224-0.255-0.2550.0000.0000.0000.000
103C366GLU-1-0.725-0.82810.6950.0360.0360.0000.0000.0000.000
104C367GLY00.0230.0017.887-0.085-0.0850.0000.0000.0000.000
105C368LYS10.8350.8988.4490.0260.0260.0000.0000.0000.000
106C369CYS0-0.068-0.02210.2820.0330.0330.0000.0000.0000.000
107C370VAL0-0.0010.0014.9230.0400.0400.0000.0000.0000.000
108C371GLU-1-0.791-0.8727.702-1.028-1.0280.0000.0000.0000.000
109C372GLY00.0190.0016.683-0.712-0.7120.0000.0000.0000.000
110C373ILE0-0.0030.0052.275-1.176-0.7893.562-0.562-3.3860.000
111C374LEU00.0130.0094.7090.4090.512-0.001-0.005-0.0970.000
112C375GLU-1-0.807-0.8937.171-0.663-0.6630.0000.0000.0000.000
113C376ILE00.0280.0092.333-1.145-0.3022.273-0.398-2.7170.000
114C377PHE0-0.009-0.0093.260-0.4630.5250.036-0.140-0.8840.000
115C378ASP-1-0.800-0.8936.5370.1550.1550.0000.0000.0000.000
116C379MET0-0.041-0.0106.9060.1710.1710.0000.0000.0000.000
117C380LEU00.0200.0242.724-0.8860.0730.374-0.204-1.129-0.001
118C381LEU00.0300.0347.1270.0560.0560.0000.0000.0000.000
119C382ALA0-0.0160.01210.252-0.029-0.0290.0000.0000.0000.000
120C383THR0-0.015-0.0288.932-0.042-0.0420.0000.0000.0000.000
121C384THR0-0.025-0.0368.5630.0680.0680.0000.0000.0000.000
122C385SER0-0.059-0.04210.938-0.081-0.0810.0000.0000.0000.000
123C386ARG10.8360.89313.884-0.281-0.2810.0000.0000.0000.000
124C387PHE00.043-0.00110.163-0.064-0.0640.0000.0000.0000.000
125C388ARG10.8620.93713.237-0.506-0.5060.0000.0000.0000.000
126C389GLU-1-0.845-0.90116.8710.1840.1840.0000.0000.0000.000
127C390LEU0-0.012-0.00117.359-0.035-0.0350.0000.0000.0000.000
128C391LYS10.8270.91418.638-0.250-0.2500.0000.0000.0000.000
129C392LEU0-0.0050.02013.288-0.029-0.0290.0000.0000.0000.000
130C393GLN00.004-0.01316.937-0.003-0.0030.0000.0000.0000.000
131C394HIS00.0260.01413.112-0.008-0.0080.0000.0000.0000.000
132C395LYS10.9030.92316.161-0.126-0.1260.0000.0000.0000.000
133C396GLU-1-0.745-0.82917.5280.2640.2640.0000.0000.0000.000
134C397TYR0-0.023-0.0389.0420.0610.0610.0000.0000.0000.000
135C398LEU0-0.0030.01213.3400.0530.0530.0000.0000.0000.000
136C399CYS0-0.045-0.02014.998-0.003-0.0030.0000.0000.0000.000
137C400VAL00.0320.00012.984-0.004-0.0040.0000.0000.0000.000
138C401LYS10.8540.9248.679-0.542-0.5420.0000.0000.0000.000
139C402ALA00.0060.00912.3360.0040.0040.0000.0000.0000.000
140C403MET0-0.048-0.03115.537-0.025-0.0250.0000.0000.0000.000
141C404ILE0-0.012-0.0089.982-0.023-0.0230.0000.0000.0000.000
142C405LEU0-0.027-0.01413.159-0.005-0.0050.0000.0000.0000.000
143C406LEU0-0.001-0.01014.225-0.045-0.0450.0000.0000.0000.000
144C407ASN0-0.036-0.01316.329-0.051-0.0510.0000.0000.0000.000
145C408SER00.0300.03016.3980.0130.0130.0000.0000.0000.000
146C409SER0-0.016-0.01417.797-0.028-0.0280.0000.0000.0000.000
147C410MET0-0.025-0.00420.2540.0000.0000.0000.0000.0000.000
148C411TYR00.0170.01722.052-0.010-0.0100.0000.0000.0000.000
149C412PRO0-0.007-0.01425.7390.0080.0080.0000.0000.0000.000
150C413LEU00.0170.02023.5260.0000.0000.0000.0000.0000.000
151C414VAL0-0.016-0.01927.941-0.007-0.0070.0000.0000.0000.000
152C415THR0-0.049-0.05326.418-0.002-0.0020.0000.0000.0000.000
153C416ALA0-0.023-0.00229.392-0.003-0.0030.0000.0000.0000.000
154C417THR0-0.022-0.01230.088-0.002-0.0020.0000.0000.0000.000
155C418GLN00.0130.00532.765-0.001-0.0010.0000.0000.0000.000
156C419ASP-1-0.727-0.85029.1920.0970.0970.0000.0000.0000.000
157C420ALA0-0.021-0.01229.9790.0070.0070.0000.0000.0000.000
158C421ASP-1-0.833-0.91031.4500.0910.0910.0000.0000.0000.000
159C422SER00.004-0.02025.9560.0070.0070.0000.0000.0000.000
160C423SER00.0600.02826.1360.0090.0090.0000.0000.0000.000
161C424ARG10.8690.92626.999-0.090-0.0900.0000.0000.0000.000
162C425LYS10.7540.88426.745-0.092-0.0920.0000.0000.0000.000
163C426LEU00.0490.03320.4820.0030.0030.0000.0000.0000.000
164C427ALA00.0120.00923.8130.0110.0110.0000.0000.0000.000
165C428HIS0-0.0260.00525.9770.0020.0020.0000.0000.0000.000
166C429LEU00.0140.01020.9780.0000.0000.0000.0000.0000.000
167C430LEU00.0460.02419.5730.0080.0080.0000.0000.0000.000
168C431ASN0-0.043-0.02522.4740.0020.0020.0000.0000.0000.000
169C432ALA0-0.0090.00324.9630.0000.0000.0000.0000.0000.000
170C433VAL00.016-0.01218.583-0.006-0.0060.0000.0000.0000.000
171C434THR0-0.011-0.01021.8950.0120.0120.0000.0000.0000.000
172C435ASP-1-0.813-0.89523.4830.1280.1280.0000.0000.0000.000
173C436ALA0-0.040-0.00822.215-0.005-0.0050.0000.0000.0000.000
174C437LEU00.0320.01318.822-0.001-0.0010.0000.0000.0000.000
175C438VAL00.0250.00921.919-0.003-0.0030.0000.0000.0000.000
176C439TRP00.0480.01225.353-0.006-0.0060.0000.0000.0000.000
177C440VAL0-0.045-0.04121.108-0.010-0.0100.0000.0000.0000.000
178C441ILE00.0080.01821.444-0.004-0.0040.0000.0000.0000.000
179C442ALA0-0.0140.01024.669-0.008-0.0080.0000.0000.0000.000
180C443LYS10.7640.89025.804-0.144-0.1440.0000.0000.0000.000
181C444SER0-0.047-0.02824.742-0.002-0.0020.0000.0000.0000.000
182C445GLY0-0.014-0.00526.744-0.003-0.0030.0000.0000.0000.000
183C446ILE0-0.0190.00426.313-0.009-0.0090.0000.0000.0000.000
184C447SER00.0550.02230.4080.0010.0010.0000.0000.0000.000
185C448SER00.0650.02631.2890.0080.0080.0000.0000.0000.000
186C449GLN00.0210.02030.7800.0010.0010.0000.0000.0000.000
187C450GLN00.0370.00628.7430.0020.0020.0000.0000.0000.000
188C451GLN0-0.031-0.01927.0030.0140.0140.0000.0000.0000.000
189C452SER00.014-0.00326.1930.0130.0130.0000.0000.0000.000
190C453MET0-0.0060.00225.5220.0110.0110.0000.0000.0000.000
191C454ARG10.7700.85320.446-0.225-0.2250.0000.0000.0000.000
192C455LEU00.0330.01321.6610.0240.0240.0000.0000.0000.000
193C456ALA00.0230.01021.7170.0170.0170.0000.0000.0000.000
194C457ASN0-0.048-0.03319.9810.0130.0130.0000.0000.0000.000
195C458LEU00.0150.00416.3600.0260.0260.0000.0000.0000.000
196C459LEU0-0.010-0.00516.9950.0350.0350.0000.0000.0000.000
197C460MET0-0.008-0.00718.0580.0020.0020.0000.0000.0000.000
198C461LEU00.0040.00912.867-0.008-0.0080.0000.0000.0000.000
199C462LEU00.0050.01813.3920.0480.0480.0000.0000.0000.000
200C463SER0-0.015-0.02013.0140.0200.0200.0000.0000.0000.000
201C464HIS0-0.040-0.01212.171-0.040-0.0400.0000.0000.0000.000
202C465VAL00.0090.0107.674-0.003-0.0030.0000.0000.0000.000
203C466ARG10.8500.9018.525-0.419-0.4190.0000.0000.0000.000
204C467HIS0-0.025-0.01210.117-0.039-0.0390.0000.0000.0000.000
205C468ALA00.0510.0095.979-0.124-0.1240.0000.0000.0000.000
206C469SER0-0.022-0.0025.255-0.192-0.1920.0000.0000.0000.000
207C470ASN00.013-0.0046.340-0.046-0.0460.0000.0000.0000.000
208C471LYS10.7820.8786.4590.8910.8910.0000.0000.0000.000
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